MELO3C002942 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C002942
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
Locationchr9 : 8232377 .. 8232613 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGGTCACGGGCGTGGTCGTGAAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATGAAGTAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTAGAACACATTGA

mRNA sequence

ATGCATGGTCACGGGCGTGGTCGTGAAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATGAAGTAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTAGAACACATTGA

Coding sequence (CDS)

ATGCATGGTCACGGGCGTGGTCGTGAAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATGAAGTAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTAGAACACATTGA

Protein sequence

MHGHGRGREEHNEYLYYEVPAAVPEQSDEQQQQENEVVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNRRRPGCRTH*
Homology
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BLAST of MELO3C002942 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 8.2e-32
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 1 

Query: 1   MHGHGRGREEHNEYLYYEVPAAVPEQSDEQQQQENEVVPEQSDEQQQQENQEEIQQQRVQ 60
           MHGHGRGR EHNEYLYY+VPAAVPEQSDEQQQQEN  VPEQSDEQQQQEN EEIQQQRVQ
Sbjct: 187 MHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQQQRVQ 246

Query: 61  SRRRQPARNRRRPGCRTH 79
            RRRQ A+NR+RPGC TH
Sbjct: 247 IRRRQLAKNRQRPGCGTH 264

The following BLAST results are available for this feature:
BLAST of MELO3C002942 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|8.2e-3287.18PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002942T1MELO3C002942T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002942Cucurbita maxima (Rimu)cmameB716
MELO3C002942Cucurbita moschata (Rifu)cmomeB135
MELO3C002942Wild cucumber (PI 183967)cpimeB350
MELO3C002942Cucumber (Chinese Long) v2cumeB361
MELO3C002942Watermelon (Charleston Gray)mewcgB004
MELO3C002942Watermelon (97103) v1mewmB005
MELO3C002942Cucurbita pepo (Zucchini)cpemeB741
MELO3C002942Bottle gourd (USVL1VR-Ls)lsimeB162
MELO3C002942Cucumber (Gy14) v2cgybmeB300
MELO3C002942Cucumber (Chinese Long) v3cucmeB359
MELO3C002942Watermelon (97103) v2mewmbB040
MELO3C002942Wax gourdmewgoB023