MELO3C002935 (gene) Melon (DHL92) v3.5.1

NameMELO3C002935
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative nuclease HARBI1
Locationchr9 : 8060470 .. 8060637 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGAGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGAGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGAGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

Protein sequence

MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA*
BLAST of MELO3C002935 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-22
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWRDDLAASMFTDWQFR 54
           MTYC+DVEDEDEGDSTYATTT SEDIQYIETTNEWSQWRDDLA SMFTDWQFR
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C002935 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-06
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1

Query: 6   DVEDE-DEGDSTYATTTTSEDIQYIETTNEWSQWRDDLAASMFT 49
           D+ED  DE DST+ATT  ++DI YIET+NEWSQWRD+LA  + T
Sbjct: 315 DIEDNIDEVDSTHATTA-ADDIHYIETSNEWSQWRDNLAEEIMT 357

BLAST of MELO3C002935 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWRDDLAASMFTDWQFR 54
           MTYC+DVEDEDEGDSTYATTT SEDIQYIETTNEWSQWRDDLA SMFTDWQFR
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C002935 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-18
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 1

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
           MTYCDDV+D DEGD  YATTTT E+I YIE TNEWSQWRD LA SMFTDWQ RNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of MELO3C002935 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-12
Identity = 33/54 (61.11%), Postives = 47/54 (87.04%), Query Frame = 1

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWRDDLAASMFTDWQFRN 55
           +TY ++++DED+GDST+ATT+  +DI YIE +NEW++WRD LA+SMFT+WQ RN
Sbjct: 241 ITYINELDDEDDGDSTHATTS-GDDITYIEPSNEWTEWRDALASSMFTEWQLRN 293

BLAST of MELO3C002935 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 3.3e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1

Query: 1   MTYCDDVEDEDEGDSTYATTTTSEDIQYIETTNEWSQWRDDLAASMFTDWQFR 54
           MT  +D+ D +E DS YATTTT ++IQYIETTNEW+QW+D+L+ +MF +WQ R
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

BLAST of MELO3C002935 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-11
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query: 6   DVEDE-DEGDSTYATTTTSEDIQYIETTNEWSQWRDDLAASMFTDWQFRN 55
           D+ED  DE DST+ATT  ++DI YIET+NEWSQWRDDLA  MFTDW+ RN
Sbjct: 154 DIEDNIDEVDSTHATTA-ADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME1.3e-2294.34Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME6.5e-0663.64Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|1.9e-2294.34retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659099182|ref|XP_008450472.1|2.8e-1880.00PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|659086609|ref|XP_008444024.1|3.0e-1261.11PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|3.3e-1160.38PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|5.7e-1170.00PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002935T1MELO3C002935T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None