MELO3C002921.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002921.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cysteine proteinase inhibitor
Location	chr09 : 7767607 .. 7768046 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGCAATTAGCATAGTTTCTTACAAAGTGTTATCTATCCAAAGGTATTAACAATGAGTTATATGAATATTGCAGAATTTCCTCTAGTACCAATTAAGGATATTGATTCTGAAGAAATGCAAGGATATGCAAAGTTTGCAACAGAAAAGCATAATGAAATTACAGGCGACAAACTGCAGTTCAAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTGGGCCAAATACTTTTCACTTATGTGTTGGAAGCTGTAAACTCGGGTGGATATGTTTGGACTTATCAAACTGTAGTATTTTACAATCAACGAGCAGCCTTACAACTCATAGAATTTGGACCTGTTCTTCCTGAGCATATAAAAAACTAAACTACCTTCTACTTAACAATATCCAAACATATATATAAATAAAATATAATCATTGTACTTACCTTTATTTC

mRNA sequence

GAAAGCAATTAGCATAGTTTCTTACAAAGTGTTATCTATCCAAAGGTATTAACAATGAGTTATATGAATATTGCAGAATTTCCTCTAGTACCAATTAAGGATATTGATTCTGAAGAAATGCAAGGATATGCAAAGTTTGCAACAGAAAAGCATAATGAAATTACAGGCGACAAACTGCAGTTCAAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTGGGCCAAATACTTTTCACTTATGTGTTGGAAGCTGTAAACTCGGGTGGATATGTTTGGACTTATCAAACTGTAGTATTTTACAATCAACGAGCAGCCTTACAACTCATAGAATTTGGACCTGTTCTTCCTGAGCATATAAAAAACTAAACTACCTTCTACTTAACAATATCCAAACATATATATAAATAAAATATAATCATTGTACTTACCTTTATTTC

Coding sequence (CDS)

ATGAGTTATATGAATATTGCAGAATTTCCTCTAGTACCAATTAAGGATATTGATTCTGAAGAAATGCAAGGATATGCAAAGTTTGCAACAGAAAAGCATAATGAAATTACAGGCGACAAACTGCAGTTCAAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTGGGCCAAATACTTTTCACTTATGTGTTGGAAGCTGTAAACTCGGGTGGATATGTTTGGACTTATCAAACTGTAGTATTTTACAATCAACGAGCAGCCTTACAACTCATAGAATTTGGACCTGTTCTTCCTGAGCATATAAAAAACTAA

Protein sequence

MSYMNIAEFPLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGRRLGQILFTYVLEAVNSGGYVWTYQTVVFYNQRAALQLIEFGPVLPEHIKN

Homology

[Close]

BLAST of MELO3C002921.2 vs. NCBI nr
Match: KGN51192.1 (hypothetical protein Csa_5G487690 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 3.4e-21
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 10  PLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGRRLGQILFTYVLEAVN 69
           P VPIKD+DSEE++G+ +FA  +HNE TG+ L+F + INGLEQGRR  +I FT VL A N
Sbjct: 13  PAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGFRIDFTLVLSAKN 72

Query: 70  SGGYVWTYQTVVFYNQRAALQLIEFGPVLPEH 102
           S G +WTY+  VF NQRA ++L+EF  VL E+
Sbjct: 73  SIGIIWTYKVKVFLNQRAGVRLLEFEAVLNEN 104

[Close]

BLAST of MELO3C002921.2 vs. NCBI nr
Match: KGN51193.1 (hypothetical protein Csa_5G487700 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 7.0e-19
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 6   IAEFPLVPIKDIDSEEMQGYAKFATEKHNEI-TGDKLQFKRAINGLEQGRRLGQILFTYV 65
           + ++  VPIKD+DSEE+QG    A   HNE  TG+ L+F + INGLE+GRR  QI++T V
Sbjct: 15  LPDYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLV 74

Query: 66  LEAVNSGGYVWTYQTVVFYNQRAALQLIEFGPVLPEHIK 104
           L A NS G VWTY+  V +N RAA++L EF  VLPE+ K
Sbjct: 75  LSAKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPENGK 113

[Close]

BLAST of MELO3C002921.2 vs. NCBI nr
Match: KGN51190.1 (Cystatin [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 8  EFPLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGR 55
          + P VPIKDIDS E+QGYA+FATE+HNEITGDKLQF+RAINGLEQGR
Sbjct: 7  DVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGR 53

[Close]

BLAST of MELO3C002921.2 vs. TrEMBL
Match: tr|A0A0A0KRZ8|A0A0A0KRZ8_CUCSA (Cysteine proteinase inhibitor OS=Cucumis sativus OX=3659 GN=Csa_5G487690 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 10  PLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGRRLGQILFTYVLEAVN 69
           P VPIKD+DSEE++G+ +FA  +HNE TG+ L+F + INGLEQGRR  +I FT VL A N
Sbjct: 13  PAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGFRIDFTLVLSAKN 72

Query: 70  SGGYVWTYQTVVFYNQRAALQLIEFGPVLPEH 102
           S G +WTY+  VF NQRA ++L+EF  VL E+
Sbjct: 73  SIGIIWTYKVKVFLNQRAGVRLLEFEAVLNEN 104

[Close]

BLAST of MELO3C002921.2 vs. TrEMBL
Match: tr|A0A0A0KNL2|A0A0A0KNL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 6   IAEFPLVPIKDIDSEEMQGYAKFATEKHNEI-TGDKLQFKRAINGLEQGRRLGQILFTYV 65
           + ++  VPIKD+DSEE+QG    A   HNE  TG+ L+F + INGLE+GRR  QI++T V
Sbjct: 15  LPDYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLV 74

Query: 66  LEAVNSGGYVWTYQTVVFYNQRAALQLIEFGPVLPEHIK 104
           L A NS G VWTY+  V +N RAA++L EF  VLPE+ K
Sbjct: 75  LSAKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPENGK 113

[Close]

BLAST of MELO3C002921.2 vs. TrEMBL
Match: tr|A0A0A0KNH4|A0A0A0KNH4_CUCSA (Cystatin OS=Cucumis sativus OX=3659 GN=Csa_5G485690 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 8  EFPLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGR 55
          + P VPIKDIDS E+QGYA+FATE+HNEITGDKLQF+RAINGLEQGR
Sbjct: 7  DVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGR 53

The following BLAST results are available for this feature:

BLAST of MELO3C002921.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51192.1	3.4e-21	57.61	hypothetical protein Csa_5G487690 [Cucumis sativus]	[more]
KGN51193.1	7.0e-19	53.54	hypothetical protein Csa_5G487700 [Cucumis sativus]	[more]
KGN51190.1	2.6e-13	82.98	Cystatin [Cucumis sativus]	[more]

BLAST of MELO3C002921.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C002921.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C002921.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRZ8\|A0A0A0KRZ8_CUCSA	2.2e-21	57.61	Cysteine proteinase inhibitor OS=Cucumis sativus OX=3659 GN=Csa_5G487690 PE=3 SV...	[more]
tr\|A0A0A0KNL2\|A0A0A0KNL2_CUCSA	4.7e-19	53.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1	[more]
tr\|A0A0A0KNH4\|A0A0A0KNH4_CUCSA	1.7e-13	82.98	Cystatin OS=Cucumis sativus OX=3659 GN=Csa_5G485690 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004869	cysteine-type endopeptidase inhibitor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR000010	Cystatin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010951	negative regulation of endopeptidase activity
biological_process	GO:0010466	negative regulation of peptidase activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity
molecular_function	GO:0030414	peptidase inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002921.2.1	MELO3C002921.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 11..103 e-value: 6.8E-11 score: 44.0
None	No IPR available	SUPERFAMILY	SSF54403	Cystatin/monellin	coord: 11..85
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 14..88 e-value: 1.0E-7 score: 32.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002921.2	Cucumber (Gy14) v2	cgybmedB300
MELO3C002921.2	Cucumber (Gy14) v1	cgymedB457
MELO3C002921.2	Cucurbita maxima (Rimu)	cmamedB806
MELO3C002921.2	Cucurbita moschata (Rifu)	cmomedB148
MELO3C002921.2	Cucurbita moschata (Rifu)	cmomedB802
MELO3C002921.2	Cucurbita pepo (Zucchini)	cpemedB100
MELO3C002921.2	Cucurbita pepo (Zucchini)	cpemedB877
MELO3C002921.2	Wild cucumber (PI 183967)	cpimedB340
MELO3C002921.2	Cucumber (Chinese Long) v2	cumedB338
MELO3C002921.2	Bottle gourd (USVL1VR-Ls)	lsimedB171
MELO3C002921.2	Watermelon (Charleston Gray)	medwcgB000
MELO3C002921.2	Watermelon (97103) v1	medwmB001
MELO3C002921.2	Silver-seed gourd	carmedB1044
MELO3C002921.2	Cucumber (Chinese Long) v3	cucmedB351
MELO3C002921.2	Watermelon (97103) v2	medwmbB034
MELO3C002921.2	Wax gourd	medwgoB021