MELO3C002921 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002921
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cysteine proteinase inhibitor (Cystatin)
Location	chr9 : 7732712 .. 7733151 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGCAATTAGCATAGTTTCTTACAAAGTGTTATCTATCCAAAGGTATTAACAATGAGTTATATGAATATTGCAGAATTTCCTCTAGTACCAATTAAGGATATTGATTCTGAAGAAATGCAAGGATATGCAAAGTTTGCAACAGAAAAGCATAATGAAATTACAGGCGACAAACTGCAGTTCAAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTGGGCCAAATACTTTTCACTTATGTGTTGGAAGCTGTAAACTCGGGTGGATATGTTTGGACTTATCAAACTGTAGTATTTTACAATCAACGAGCAGCCTTACAACTCATAGAATTTGGACCTGTTCTTCCTGAGCATATAAAAAACTAAACTACCTTCTACTTAACAATATCCAAACATATATATAAATAAAATATAATCATTGTACTTACCTTTATTTC

mRNA sequence

GAAAGCAATTAGCATAGTTTCTTACAAAGTGTTATCTATCCAAAGGTATTAACAATGAGTTATATGAATATTGCAGAATTTCCTCTAGTACCAATTAAGGATATTGATTCTGAAGAAATGCAAGGATATGCAAAGTTTGCAACAGAAAAGCATAATGAAATTACAGGCGACAAACTGCAGTTCAAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTGGGCCAAATACTTTTCACTTATGTGTTGGAAGCTGTAAACTCGGGTGGATATGTTTGGACTTATCAAACTGTAGTATTTTACAATCAACGAGCAGCCTTACAACTCATAGAATTTGGACCTGTTCTTCCTGAGCATATAAAAAACTAAACTACCTTCTACTTAACAATATCCAAACATATATATAAATAAAATATAATCATTGTACTTACCTTTATTTC

Coding sequence (CDS)

ATGAGTTATATGAATATTGCAGAATTTCCTCTAGTACCAATTAAGGATATTGATTCTGAAGAAATGCAAGGATATGCAAAGTTTGCAACAGAAAAGCATAATGAAATTACAGGCGACAAACTGCAGTTCAAGAGGGCAATAAATGGGTTGGAACAGGGACGAAGGTTGGGCCAAATACTTTTCACTTATGTGTTGGAAGCTGTAAACTCGGGTGGATATGTTTGGACTTATCAAACTGTAGTATTTTACAATCAACGAGCAGCCTTACAACTCATAGAATTTGGACCTGTTCTTCCTGAGCATATAAAAAACTAA

Protein sequence

MSYMNIAEFPLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGRRLGQILFTYVLEAVNSGGYVWTYQTVVFYNQRAALQLIEFGPVLPEHIKN*

Homology

[Close]

BLAST of MELO3C002921 vs. TrEMBL
Match: A0A0A0KRZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487690 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 10  PLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGRRLGQILFTYVLEAVN 69
           P VPIKD+DSEE++G+ +FA  +HNE TG+ L+F + INGLEQGRR  +I FT VL A N
Sbjct: 13  PAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGFRIDFTLVLSAKN 72

Query: 70  SGGYVWTYQTVVFYNQRAALQLIEFGPVLPEH 102
           S G +WTY+  VF NQRA ++L+EF  VL E+
Sbjct: 73  SIGIIWTYKVKVFLNQRAGVRLLEFEAVLNEN 104

[Close]

BLAST of MELO3C002921 vs. TrEMBL
Match: A0A0A0KNL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487700 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-19
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1


Query: 6   IAEFPLVPIKDIDSEEMQGYAKFATEKHNEI-TGDKLQFKRAINGLEQGRRLGQILFTYV 65
           + ++  VPIKD+DSEE+QG    A   HNE  TG+ L+F + INGLE+GRR  QI++T V
Sbjct: 15  LPDYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLV 74

Query: 66  LEAVNSGGYVWTYQTVVFYNQRAALQLIEFGPVLPEHIK 104
           L A NS G VWTY+  V +N RAA++L EF  VLPE+ K
Sbjct: 75  LSAKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPENGK 113

[Close]

BLAST of MELO3C002921 vs. TrEMBL
Match: A0A0A0KNH4_CUCSA (Cystatin OS=Cucumis sativus GN=Csa_5G485690 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.4e-14
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1


Query: 8  EFPLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGR 55
          + P VPIKDIDS E+QGYA+FATE+HNEITGDKLQF+RAINGLEQGR
Sbjct: 7  DVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGR 53

[Close]

BLAST of MELO3C002921 vs. NCBI nr
Match: gi|700196015|gb|KGN51192.1| (hypothetical protein Csa_5G487690 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-21
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 10  PLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGRRLGQILFTYVLEAVN 69
           P VPIKD+DSEE++G+ +FA  +HNE TG+ L+F + INGLEQGRR  +I FT VL A N
Sbjct: 13  PAVPIKDVDSEEIRGFGEFAVSEHNEATGENLEFVKVINGLEQGRRGFRIDFTLVLSAKN 72

Query: 70  SGGYVWTYQTVVFYNQRAALQLIEFGPVLPEH 102
           S G +WTY+  VF NQRA ++L+EF  VL E+
Sbjct: 73  SIGIIWTYKVKVFLNQRAGVRLLEFEAVLNEN 104

[Close]

BLAST of MELO3C002921 vs. NCBI nr
Match: gi|700196016|gb|KGN51193.1| (hypothetical protein Csa_5G487700 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.8e-19
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1


Query: 6   IAEFPLVPIKDIDSEEMQGYAKFATEKHNEI-TGDKLQFKRAINGLEQGRRLGQILFTYV 65
           + ++  VPIKD+DSEE+QG    A   HNE  TG+ L+F + INGLE+GRR  QI++T V
Sbjct: 15  LPDYDTVPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLV 74

Query: 66  LEAVNSGGYVWTYQTVVFYNQRAALQLIEFGPVLPEHIK 104
           L A NS G VWTY+  V +N RAA++L EF  VLPE+ K
Sbjct: 75  LSAKNSLGIVWTYKAKVIFNNRAAVRLPEFEAVLPENGK 113

[Close]

BLAST of MELO3C002921 vs. NCBI nr
Match: gi|700196013|gb|KGN51190.1| (Cystatin [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1


Query: 8  EFPLVPIKDIDSEEMQGYAKFATEKHNEITGDKLQFKRAINGLEQGR 55
          + P VPIKDIDS E+QGYA+FATE+HNEITGDKLQF+RAINGLEQGR
Sbjct: 7  DVPPVPIKDIDSAEIQGYARFATERHNEITGDKLQFQRAINGLEQGR 53

The following BLAST results are available for this feature:

BLAST of MELO3C002921 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRZ8_CUCSA	1.6e-21	57.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487690 PE=4 SV=1	[more]
A0A0A0KNL2_CUCSA	3.3e-19	53.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487700 PE=4 SV=1	[more]
A0A0A0KNH4_CUCSA	9.4e-14	82.98	Cystatin OS=Cucumis sativus GN=Csa_5G485690 PE=4 SV=1	[more]

BLAST of MELO3C002921 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196015\|gb\|KGN51192.1\|	2.3e-21	57.61	hypothetical protein Csa_5G487690 [Cucumis sativus]	[more]
gi\|700196016\|gb\|KGN51193.1\|	4.8e-19	53.54	hypothetical protein Csa_5G487700 [Cucumis sativus]	[more]
gi\|700196013\|gb\|KGN51190.1\|	1.3e-13	82.98	Cystatin [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020381	Proteinase inhibitor I25, cystatin, conserved region

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU45658	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002921T1	MELO3C002921T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU45658	MU45658	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PFAM	PF16845	SQAPI	coord: 14..92 score: 3.
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 14..83 score: 1.
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 11..85 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002921	Silver-seed gourd	carmeB1030
MELO3C002921	Cucumber (Chinese Long) v3	cucmeB359
MELO3C002921	Watermelon (97103) v2	mewmbB038
MELO3C002921	Wax gourd	mewgoB023
MELO3C002921	Cucumber (Gy14) v1	cgymeB460
MELO3C002921	Cucurbita maxima (Rimu)	cmameB716
MELO3C002921	Cucurbita moschata (Rifu)	cmomeB135
MELO3C002921	Cucurbita moschata (Rifu)	cmomeB705
MELO3C002921	Wild cucumber (PI 183967)	cpimeB350
MELO3C002921	Cucumber (Chinese Long) v2	cumeB361
MELO3C002921	Watermelon (Charleston Gray)	mewcgB002
MELO3C002921	Watermelon (97103) v1	mewmB003
MELO3C002921	Cucurbita pepo (Zucchini)	cpemeB078
MELO3C002921	Cucurbita pepo (Zucchini)	cpemeB741
MELO3C002921	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C002921	Cucumber (Gy14) v2	cgybmeB300