MELO3C002914.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002914.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	stress response protein NST1-like
Location	chr09 : 7587376 .. 7587669 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACAAACAAAAGAAGAACCTTGAGACTTCCTTCACCTCCAAACTTACCTCAAAGAAGGATGAGTCATCCACTCAATTTGATGCTAAACATCCGGAACAATCCAAAACCCATGAATCTTCTTACCAGAAATCCAGACCTGAGGTTCCTGGGAAGAAGATTTCCATCAAGCCCATAATAAAGACAACCTCTTTCCAATCACACTCTGTTAGGCCTGATTCGAAGCAAGCACAGAGATCCAAGAAGAGCGTTGCAGATTTCGCTCTTGACGCAAATGAGTGGATGATGTGA

mRNA sequence

ATGGCTAACAAACAAAAGAAGAACCTTGAGACTTCCTTCACCTCCAAACTTACCTCAAAGAAGGATGAGTCATCCACTCAATTTGATGCTAAACATCCGGAACAATCCAAAACCCATGAATCTTCTTACCAGAAATCCAGACCTGAGGTTCCTGGGAAGAAGATTTCCATCAAGCCCATAATAAAGACAACCTCTTTCCAATCACACTCTGTTAGGCCTGATTCGAAGCAAGCACAGAGATCCAAGAAGAGCGTTGCAGATTTCGCTCTTGACGCAAATGAGTGGATGATGTGA

Coding sequence (CDS)

ATGGCTAACAAACAAAAGAAGAACCTTGAGACTTCCTTCACCTCCAAACTTACCTCAAAGAAGGATGAGTCATCCACTCAATTTGATGCTAAACATCCGGAACAATCCAAAACCCATGAATCTTCTTACCAGAAATCCAGACCTGAGGTTCCTGGGAAGAAGATTTCCATCAAGCCCATAATAAAGACAACCTCTTTCCAATCACACTCTGTTAGGCCTGATTCGAAGCAAGCACAGAGATCCAAGAAGAGCGTTGCAGATTTCGCTCTTGACGCAAATGAGTGGATGATGTGA

Protein sequence

MANKQKKNLETSFTSKLTSKKDESSTQFDAKHPEQSKTHESSYQKSRPEVPGKKISIKPIIKTTSFQSHSVRPDSKQAQRSKKSVADFALDANEWMM

Homology

[Close]

BLAST of MELO3C002914.2 vs. NCBI nr
Match: XP_008464070.1 (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 7.8e-12
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 1  MANKQKKNLETSFTSKLTSKKDESSTQFDAKHPEQSKTHESSYQKSRPEVPGKKISIKPI 60
          MA++ KK LETS TSKL  +KD S  Q  AKH + SK  ESS +KSR E   KKI +KP 
Sbjct: 1  MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQ 60

Query: 61 IKTTSFQSHSVRPDSKQAQRSKKSVADFALDANEWM 97
           +T+S Q+H V+PD +QAQR KK   DF LD +E M
Sbjct: 61 TQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELM 96

[Close]

BLAST of MELO3C002914.2 vs. TrEMBL
Match: tr|A0A1S3CKM2|A0A1S3CKM2_CUCME (stress response protein NST1-like OS=Cucumis melo OX=3656 GN=LOC103502045 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-12
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 1  MANKQKKNLETSFTSKLTSKKDESSTQFDAKHPEQSKTHESSYQKSRPEVPGKKISIKPI 60
          MA++ KK LETS TSKL  +KD S  Q  AKH + SK  ESS +KSR E   KKI +KP 
Sbjct: 1  MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQ 60

Query: 61 IKTTSFQSHSVRPDSKQAQRSKKSVADFALDANEWM 97
           +T+S Q+H V+PD +QAQR KK   DF LD +E M
Sbjct: 61 TQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELM 96

The following BLAST results are available for this feature:

BLAST of MELO3C002914.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464070.1	7.8e-12	54.17	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]

BLAST of MELO3C002914.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C002914.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C002914.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKM2\|A0A1S3CKM2_CUCME	5.1e-12	54.17	stress response protein NST1-like OS=Cucumis melo OX=3656 GN=LOC103502045 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002914.2.1	MELO3C002914.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002914.2	Silver-seed gourd	carmedB1044
MELO3C002914.2	Cucumber (Chinese Long) v3	cucmedB351
MELO3C002914.2	Watermelon (97103) v2	medwmbB034
MELO3C002914.2	Wax gourd	medwgoB021
MELO3C002914.2	Cucumber (Gy14) v2	cgybmedB300
MELO3C002914.2	Cucumber (Gy14) v1	cgymedB457
MELO3C002914.2	Cucurbita maxima (Rimu)	cmamedB806
MELO3C002914.2	Cucurbita moschata (Rifu)	cmomedB148
MELO3C002914.2	Cucurbita moschata (Rifu)	cmomedB802
MELO3C002914.2	Cucurbita pepo (Zucchini)	cpemedB100
MELO3C002914.2	Cucurbita pepo (Zucchini)	cpemedB877
MELO3C002914.2	Wild cucumber (PI 183967)	cpimedB340
MELO3C002914.2	Cucumber (Chinese Long) v2	cumedB338
MELO3C002914.2	Bottle gourd (USVL1VR-Ls)	lsimedB171
MELO3C002914.2	Watermelon (Charleston Gray)	medwcgB000
MELO3C002914.2	Watermelon (97103) v1	medwmB001