MELO3C002908 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C002908
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNADH-quinone oxidoreductase subunit D 1
Locationchr9 : 7433242 .. 7433565 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCAGATACATACCCTAGCCAAAGGCTCATTGCAAACCCCTAAGGAAGGAGATGCAAATAGAATAGTCAAATTGATCGCATGGCCAAGGGCAGCTTGGACGAGAATGCCAACTGGGAGACTTCAACTCCTTCCCCATCAACTGACAACTGAGGCCAATGTTTGGTTGTTCTTCATCAAGAAGAAGATCATCGCAATGTGCCATGATAGCACAACCCCAATTGAGTACGGCGCTGCTTCTATATTGCATTCTGGTGAAGCAACCATTCAATTTGGGTTATATAATGAATGGGGCTTTCCTTGGCTGGATGAGGAACCTTAA

mRNA sequence

ATGATCCAGATACATACCCTAGCCAAAGGCTCATTGCAAACCCCTAAGGAAGGAGATGCAAATAGAATAGTCAAATTGATCGCATGGCCAAGGGCAGCTTGGACGAGAATGCCAACTGGGAGACTTCAACTCCTTCCCCATCAACTGACAACTGAGGCCAATGTTTGGTTGTTCTTCATCAAGAAGAAGATCATCGCAATGTGCCATGATAGCACAACCCCAATTGAGTACGGCGCTGCTTCTATATTGCATTCTGGTGAAGCAACCATTCAATTTGGGTTATATAATGAATGGGGCTTTCCTTGGCTGGATGAGGAACCTTAA

Coding sequence (CDS)

ATGATCCAGATACATACCCTAGCCAAAGGCTCATTGCAAACCCCTAAGGAAGGAGATGCAAATAGAATAGTCAAATTGATCGCATGGCCAAGGGCAGCTTGGACGAGAATGCCAACTGGGAGACTTCAACTCCTTCCCCATCAACTGACAACTGAGGCCAATGTTTGGTTGTTCTTCATCAAGAAGAAGATCATCGCAATGTGCCATGATAGCACAACCCCAATTGAGTACGGCGCTGCTTCTATATTGCATTCTGGTGAAGCAACCATTCAATTTGGGTTATATAATGAATGGGGCTTTCCTTGGCTGGATGAGGAACCTTAA

Protein sequence

MIQIHTLAKGSLQTPKEGDANRIVKLIAWPRAAWTRMPTGRLQLLPHQLTTEANVWLFFIKKKIIAMCHDSTTPIEYGAASILHSGEATIQFGLYNEWGFPWLDEEP*
Homology
[Close]
BLAST of MELO3C002908 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 1 

Query: 12 LQTPKEGDANRIVKLIAWPRAAWTRMPTGRLQLLPHQLTTEANVWLFFIKKKIIAMCHDS 71
          L+ P+  D    +K + WP       PTG+ QLLPH L TEA +WL F+KKKI+   HD+
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 72 TTPIE 77
             +E
Sbjct: 70 NISME 74

[Close]
BLAST of MELO3C002908 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 1 

Query: 12 LQTPKEGDANRIVKLIAWPRAAWTRMPTGRLQLLPHQLTTEANVWLFFIKKKIIAMCHDS 71
          L+ P+  D    +K + WP       PTG+ QLLPH L TEA +WL F+KKKI+   HD+
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 72 TTPIE 77
             +E
Sbjct: 70 NISME 74

The following BLAST results are available for this feature:
BLAST of MELO3C002908 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2P0_CUCSA1.8e-0743.08Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
BLAST of MELO3C002908 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199714|gb|KGN54872.1|2.5e-0743.08hypothetical protein Csa_4G569710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002908T1MELO3C002908T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002908Cucumber (Gy14) v1cgymeB460
MELO3C002908Cucurbita maxima (Rimu)cmameB716
MELO3C002908Cucurbita moschata (Rifu)cmomeB135
MELO3C002908Cucurbita moschata (Rifu)cmomeB705
MELO3C002908Wild cucumber (PI 183967)cpimeB350
MELO3C002908Cucumber (Chinese Long) v2cumeB361
MELO3C002908Watermelon (Charleston Gray)mewcgB002
MELO3C002908Watermelon (97103) v1mewmB003
MELO3C002908Cucurbita pepo (Zucchini)cpemeB078
MELO3C002908Cucurbita pepo (Zucchini)cpemeB741
MELO3C002908Bottle gourd (USVL1VR-Ls)lsimeB162
MELO3C002908Cucumber (Gy14) v2cgybmeB300
MELO3C002908Silver-seed gourdcarmeB1030
MELO3C002908Cucumber (Chinese Long) v3cucmeB359
MELO3C002908Watermelon (97103) v2mewmbB038
MELO3C002908Wax gourdmewgoB030