MELO3C002901 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002901
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Armadillo/beta-catenin repeat family protein
Location	chr9 : 7289891 .. 7290247 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGATGGTAAATCTGTTGATGAGAAAAAAGTAGCTGCTAAGGCATTGTCTTCTCTATTACAGTACTCTGGTAATAGAAAAATTTTCCAGAAAGAAGAGAGGGGAATTATAAGTGCGGTGAATTATAAGTGCGGTTCAACTCTTAGACCCTTCAAAAATCTCGAATCTGGACAAGAAGTACCTGTTTCATTATTATCCTCAGTTGCGATTTCAAGTAAGTGTAGAAAGCAAATGGTTGCTGCTGGTGCTGGTTTGTATCTACAAAACCTTGTTGAAATGAATGTTGAGGGGTTAAAGAAGCTATTGGAAAGCCTTGGGCGTGGTAAAATCTGGGGTGTCTTTGCTAGATCTTAG

mRNA sequence

ATGTTGGATGGTAAATCTGTTGATGAGAAAAAAGTAGCTGCTAAGGCATTGTCTTCTCTATTACAGTACTCTGGTAATAGAAAAATTTTCCAGAAAGAAGAGAGGGGAATTATAAGTGCGGTGAATTATAAGTGCGGTTCAACTCTTAGACCCTTCAAAAATCTCGAATCTGGACAAGAAGTACCTGTTTCATTATTATCCTCAGTTGCGATTTCAAGTAAGTGTAGAAAGCAAATGGTTGCTGCTGGTGCTGGTTTGTATCTACAAAACCTTGTTGAAATGAATGTTGAGGGGTTAAAGAAGCTATTGGAAAGCCTTGGGCGTGGTAAAATCTGGGGTGTCTTTGCTAGATCTTAG

Coding sequence (CDS)

ATGTTGGATGGTAAATCTGTTGATGAGAAAAAAGTAGCTGCTAAGGCATTGTCTTCTCTATTACAGTACTCTGGTAATAGAAAAATTTTCCAGAAAGAAGAGAGGGGAATTATAAGTGCGGTGAATTATAAGTGCGGTTCAACTCTTAGACCCTTCAAAAATCTCGAATCTGGACAAGAAGTACCTGTTTCATTATTATCCTCAGTTGCGATTTCAAGTAAGTGTAGAAAGCAAATGGTTGCTGCTGGTGCTGGTTTGTATCTACAAAACCTTGTTGAAATGAATGTTGAGGGGTTAAAGAAGCTATTGGAAAGCCTTGGGCGTGGTAAAATCTGGGGTGTCTTTGCTAGATCTTAG

Protein sequence

MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQEVPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFARS*

Homology

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BLAST of MELO3C002901 vs. TrEMBL
Match: A0A0A0M0M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699580 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-39
Identity = 95/118 (80.51%), Postives = 101/118 (85.59%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQE 60
           MLDGKSVDE+K AAKALSSLLQYSGNRKIFQKEERGI+SAV     S      NL+  ++
Sbjct: 440 MLDGKSVDERKAAAKALSSLLQYSGNRKIFQKEERGIVSAVQLLDPS----ISNLD--KK 499

Query: 61  VPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFARS 119
            PVSLLSSVAISSKCRKQMVAAGAGLYLQ LVE+NVEG KKLLESLGRGKIWGVFARS
Sbjct: 500 YPVSLLSSVAISSKCRKQMVAAGAGLYLQKLVEINVEGSKKLLESLGRGKIWGVFARS 551

[Close]

BLAST of MELO3C002901 vs. TrEMBL
Match: A0A061G6D5_THECC (ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_014724 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-30
Identity = 76/118 (64.41%), Postives = 94/118 (79.66%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPF-KNLESGQ 60
           M+DGK+V+EK+ AA ALS+L+ Y+GNRK+FQK+ERGI++AV       L P  +NL+  +
Sbjct: 439 MMDGKAVEEKEAAAMALSTLMLYAGNRKVFQKDERGIVNAVQL-----LDPLIQNLD--K 498

Query: 61  EVPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFAR 118
           + PV +LS +  S KCRKQMVAAGA +YLQ LVEMNVEG KKLLESLGRGKIWGVFAR
Sbjct: 499 KYPVLILSELVHSKKCRKQMVAAGACVYLQKLVEMNVEGAKKLLESLGRGKIWGVFAR 549

[Close]

BLAST of MELO3C002901 vs. TrEMBL
Match: M5WBC9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003699mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.1e-30
Identity = 75/118 (63.56%), Postives = 95/118 (80.51%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQE 60
           MLDGK+V+EK+ AAKALS+L+ Y+GNRK+F+K E GI+S+V     S     +NL+  ++
Sbjct: 444 MLDGKAVEEKEAAAKALSTLILYAGNRKLFKKHEGGIVSSVQLLDPS----IQNLD--KK 503

Query: 61  VPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFARS 119
            PV+LL+S+A S KCRKQMVAAGA L+LQ LV+M VEG KKLLESLGRGKIWGVF+RS
Sbjct: 504 YPVALLASLAHSKKCRKQMVAAGACLHLQKLVDMEVEGSKKLLESLGRGKIWGVFSRS 555

[Close]

BLAST of MELO3C002901 vs. TrEMBL
Match: B9I3X6_POPTR (Armadillo/beta-catenin repeat family protein OS=Populus trichocarpa GN=POPTR_0012s10620g PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.8e-28
Identity = 70/117 (59.83%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQE 60
           MLDGK+V+EK+ AAKALS L+ Y+GNR+IF+K E GI+S V     S     +NL+  ++
Sbjct: 441 MLDGKAVEEKEAAAKALSLLVLYAGNRRIFRKSEGGIVSTVQLLDTS----IQNLD--KK 500

Query: 61  VPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFAR 118
            PVS+L+S+  S KCRKQM+AAGA ++L+ LV+MNVEG KKLL+ LGRGKIWGVFAR
Sbjct: 501 YPVSILASLVHSKKCRKQMIAAGASVHLKKLVDMNVEGSKKLLDGLGRGKIWGVFAR 551

[Close]

BLAST of MELO3C002901 vs. TrEMBL
Match: A0A0D2PM69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G055200 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-27
Identity = 69/118 (58.47%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPF-KNLESGQ 60
           MLDGK+V+EK+  A ALS L+ Y GNRK+F K+ERGI++ V       L P  +NL+  +
Sbjct: 440 MLDGKAVEEKEAGAMALSKLVLYVGNRKVFHKDERGIVNVVQL-----LDPLIQNLD--K 499

Query: 61  EVPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFAR 118
           + PVS+LS +  S KCRKQM+AAGA ++LQ LVE+N++G KKLLESLG+GKIWGVFAR
Sbjct: 500 KYPVSILSELLHSKKCRKQMIAAGACVHLQKLVEVNIDGAKKLLESLGKGKIWGVFAR 550

[Close]

BLAST of MELO3C002901 vs. TAIR10
Match: AT5G50900.1 (AT5G50900.1 ARM repeat superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 7.0e-25
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRP-FKNLESGQ 60
           MLDGK+++EK+ A+KALS+LL  + NRKIF+K ++G++S V       L P  K L+  +
Sbjct: 444 MLDGKAIEEKEAASKALSTLLVCTSNRKIFKKSDKGVVSLVQL-----LDPKIKKLD--K 503

Query: 61  EVPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFAR 118
              VS L  +  S KCRKQ+VAAGA L+LQ LV+M+ EG KKL E+L R KIWGVF R
Sbjct: 504 RYTVSALELLVTSKKCRKQVVAAGACLHLQKLVDMDTEGAKKLAENLSRSKIWGVFTR 554

[Close]

BLAST of MELO3C002901 vs. TAIR10
Match: AT2G45720.1 (AT2G45720.1 ARM repeat superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQE 60
           ML+ K+   ++VAA+A++SL+    N +  +++E+ + S V       L P     S ++
Sbjct: 442 MLEAKASGAREVAAQAIASLVTVPRNCREVKRDEKSVTSLV-----MLLEPSPG-NSAKK 501

Query: 61  VPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFAR 118
             VS L+++  S KC+K MV+ GA  YL+ L E+ V G KKLLE + +GK+   F+R
Sbjct: 502 YAVSGLAALCSSRKCKKLMVSHGAVGYLKKLSELEVPGSKKLLERIEKGKLKSFFSR 552

[Close]

BLAST of MELO3C002901 vs. TAIR10
Match: AT1G01830.2 (AT1G01830.2 ARM repeat superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQE 60
           +L+ KS   ++ AA+A++ L+     R+  +K+ + +++ +     S         + ++
Sbjct: 463 LLESKSNGCREAAAQAIAGLVAEGRIRRELKKDGKSVLTNLVMLLDSNPG-----NTAKK 522

Query: 61  VPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFAR 118
             V+ L  ++ S K +K MV+ GA  YL+ L EM V G  KLLE L RGK+   F R
Sbjct: 523 YAVAGLLGMSGSEKSKKMMVSYGAIGYLKKLSEMEVMGADKLLEKLERGKLRSFFHR 574

[Close]

BLAST of MELO3C002901 vs. NCBI nr
Match: gi|659118181|ref|XP_008458985.1| (PREDICTED: U-box domain-containing protein 10 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 4.3e-40
Identity = 97/118 (82.20%), Postives = 101/118 (85.59%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQE 60
           MLDGKSVDE+K AAKALSSLLQYSGNRKIFQKEERGIISAV     S      NL+  ++
Sbjct: 440 MLDGKSVDERKAAAKALSSLLQYSGNRKIFQKEERGIISAVQLLDPS----ISNLD--KK 499

Query: 61  VPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFARS 119
            PVSLLSSVAISSKCRKQMVAAGAGLYLQ LVEMNVEG KKLLESLGRGKIWGVFARS
Sbjct: 500 YPVSLLSSVAISSKCRKQMVAAGAGLYLQKLVEMNVEGSKKLLESLGRGKIWGVFARS 551

[Close]

BLAST of MELO3C002901 vs. NCBI nr
Match: gi|449455447|ref|XP_004145464.1| (PREDICTED: vacuolar protein 8 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 95/118 (80.51%), Postives = 101/118 (85.59%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQE 60
           MLDGKSVDE+K AAKALSSLLQYSGNRKIFQKEERGI+SAV     S      NL+  ++
Sbjct: 440 MLDGKSVDERKAAAKALSSLLQYSGNRKIFQKEERGIVSAVQLLDPS----ISNLD--KK 499

Query: 61  VPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFARS 119
            PVSLLSSVAISSKCRKQMVAAGAGLYLQ LVE+NVEG KKLLESLGRGKIWGVFARS
Sbjct: 500 YPVSLLSSVAISSKCRKQMVAAGAGLYLQKLVEINVEGSKKLLESLGRGKIWGVFARS 551

[Close]

BLAST of MELO3C002901 vs. NCBI nr
Match: gi|590670572|ref|XP_007038093.1| (ARM repeat superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-30
Identity = 76/118 (64.41%), Postives = 94/118 (79.66%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPF-KNLESGQ 60
           M+DGK+V+EK+ AA ALS+L+ Y+GNRK+FQK+ERGI++AV       L P  +NL+  +
Sbjct: 439 MMDGKAVEEKEAAAMALSTLMLYAGNRKVFQKDERGIVNAVQL-----LDPLIQNLD--K 498

Query: 61  EVPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFAR 118
           + PV +LS +  S KCRKQMVAAGA +YLQ LVEMNVEG KKLLESLGRGKIWGVFAR
Sbjct: 499 KYPVLILSELVHSKKCRKQMVAAGACVYLQKLVEMNVEGAKKLLESLGRGKIWGVFAR 549

[Close]

BLAST of MELO3C002901 vs. NCBI nr
Match: gi|645268461|ref|XP_008239538.1| (PREDICTED: protein ARABIDILLO 2 [Prunus mume])

HSP 1 Score: 139.0 bits (349), Expect = 5.2e-30
Identity = 76/118 (64.41%), Postives = 95/118 (80.51%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPFKNLESGQE 60
           MLDGK+V+EK+ AAKALS+L+ Y+GNRK+F+K E GI+S+V     S     +NLE  ++
Sbjct: 444 MLDGKAVEEKEAAAKALSTLILYAGNRKLFKKHEGGIVSSVQLLDPS----IQNLE--KK 503

Query: 61  VPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFARS 119
            PV+LL+S+A S KCRKQMVAAGA L+LQ LV+M VEG KKLLESLGRGKIWGVF+RS
Sbjct: 504 YPVALLASLAHSKKCRKQMVAAGACLHLQKLVDMEVEGSKKLLESLGRGKIWGVFSRS 555

[Close]

BLAST of MELO3C002901 vs. NCBI nr
Match: gi|823179864|ref|XP_012487632.1| (PREDICTED: uncharacterized protein LOC105800831 [Gossypium raimondii])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1


Query: 1   MLDGKSVDEKKVAAKALSSLLQYSGNRKIFQKEERGIISAVNYKCGSTLRPF-KNLESGQ 60
           MLDGK+V+EK+ AA ALSSLL Y+GNRK+F+ EERGI++AV       L P+ +NL+  +
Sbjct: 439 MLDGKAVEEKEAAAMALSSLLLYTGNRKVFRNEERGIVNAVQL-----LDPWIQNLD--K 498

Query: 61  EVPVSLLSSVAISSKCRKQMVAAGAGLYLQNLVEMNVEGLKKLLESLGRGKIWGVFAR 118
           +  VS+LS +  S  CRKQMVAAGA +YLQ LVEMNVEG KKLLESLGRGKIWGVFAR
Sbjct: 499 KYLVSILSELVSSKNCRKQMVAAGACVYLQKLVEMNVEGAKKLLESLGRGKIWGVFAR 549

The following BLAST results are available for this feature:

BLAST of MELO3C002901 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0M7_CUCSA	1.1e-39	80.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699580 PE=4 SV=1	[more]
A0A061G6D5_THECC	1.6e-30	64.41	ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_014724 PE=4 S...	[more]
M5WBC9_PRUPE	8.1e-30	63.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003699mg PE=4 SV=1	[more]
B9I3X6_POPTR	5.8e-28	59.83	Armadillo/beta-catenin repeat family protein OS=Populus trichocarpa GN=POPTR_001...	[more]
A0A0D2PM69_GOSRA	2.9e-27	58.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G055200 PE=4 SV=1	[more]

BLAST of MELO3C002901 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50900.1	7.0e-25	52.54	ARM repeat superfamily protein	[more]
AT2G45720.1	2.0e-11	35.90	ARM repeat superfamily protein	[more]
AT1G01830.2	1.5e-06	30.77	ARM repeat superfamily protein	[more]

BLAST of MELO3C002901 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118181\|ref\|XP_008458985.1\|	4.3e-40	82.20	PREDICTED: U-box domain-containing protein 10 [Cucumis melo]	[more]
gi\|449455447\|ref\|XP_004145464.1\|	1.6e-39	80.51	PREDICTED: vacuolar protein 8 [Cucumis sativus]	[more]
gi\|590670572\|ref\|XP_007038093.1\|	2.3e-30	64.41	ARM repeat superfamily protein isoform 1 [Theobroma cacao]	[more]
gi\|645268461\|ref\|XP_008239538.1\|	5.2e-30	64.41	PREDICTED: protein ARABIDILLO 2 [Prunus mume]	[more]
gi\|823179864\|ref\|XP_012487632.1\|	1.2e-29	65.25	PREDICTED: uncharacterized protein LOC105800831 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002901T1	MELO3C002901T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 1..108 score: 4.0
None	No IPR available	PANTHER	PTHR23315:SF86	ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEIN	coord: 1..108 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002901	Cucumber (Chinese Long) v3	cucmeB359
MELO3C002901	Watermelon (97103) v2	mewmbB038
MELO3C002901	Wax gourd	mewgoB030
MELO3C002901	Cucumber (Gy14) v1	cgymeB460
MELO3C002901	Wild cucumber (PI 183967)	cpimeB350
MELO3C002901	Cucumber (Chinese Long) v2	cumeB361
MELO3C002901	Watermelon (Charleston Gray)	mewcgB002
MELO3C002901	Watermelon (97103) v1	mewmB003
MELO3C002901	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C002901	Cucumber (Gy14) v2	cgybmeB300