MELO3C002898 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C002898
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPhotosystem II CP47 reaction center protein
Locationchr9 : 7244673 .. 7244886 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATATTGAAACTGTCCTTTCGAGTAGTATCACTATTGCATTTTTTGCAACTTTGTTGTCTTTAGAACTATATGGTATGGTTCAACCACTTCTCCAATTGAATTATTTGGGTCCACTCGTTATCAATGGGATTAGAGAAACTTCCAGCAAGAAATATATCAAAGAGTTAGTACCGAGTTTGTTGAAAATCAAAGTTTGTGAGAAGCTTG

mRNA sequence

ATGGGAAATATTGAAACTGTCCTTTCGAGTAGTATCACTATTGCATTTTTTGCAACTTTGTTGTCTTTAGAACTATATGGTATGGTTCAACCACTTCTCCAATTGAATTATTTGGGTCCACTCGTTATCAATGGGATTAGAGAAACTTCCAGCAAGAAATATATCAAAGAGTTAGTACCGAGTTTGTTGAAAATCAAAGTTTGTGAGAAGCTTG

Coding sequence (CDS)

ATGGGAAATATTGAAACTGTCCTTTCGAGTAGTATCACTATTGCATTTTTTGCAACTTTGTTGTCTTTAGAACTATATGGTATGGTTCAACCACTTCTCCAATTGAATTATTTGGGTCCACTCGTTATCAATGGGATTAGAGAAACTTCCAGCAAGAAATATATCAAAGAGTTAGTACCGAGTTTGTTGAAAATCAAAGTTTGTGAGAAGCTTG

Protein sequence

MGNIETVLSSSITIAFFATLLSLELYGMVQPLLQLNYLGPLVINGIRETSSKKYIKELVPSLLKIKVCEKL
Homology
[Close]
BLAST of MELO3C002898 vs. TrEMBL
Match: B9SD21_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1067780 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-07
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1 

Query: 20  LLSLELYGMVQPLLQLNYLGPLVINGIRETSSKKYIKELV 60
           LL LEL GMVQ LL+LNYL PLVINGI++TSSKKYI+ELV
Sbjct: 72  LLLLELCGMVQQLLRLNYLVPLVINGIKDTSSKKYIEELV 111

[Close]
BLAST of MELO3C002898 vs. NCBI nr
Match: gi|223536820|gb|EEF38459.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-07
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1 

Query: 20  LLSLELYGMVQPLLQLNYLGPLVINGIRETSSKKYIKELV 60
           LL LEL GMVQ LL+LNYL PLVINGI++TSSKKYI+ELV
Sbjct: 72  LLLLELCGMVQQLLRLNYLVPLVINGIKDTSSKKYIEELV 111

The following BLAST results are available for this feature:
BLAST of MELO3C002898 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SD21_RICCO2.6e-0780.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1067780 PE=4 SV=1[more]
BLAST of MELO3C002898 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223536820|gb|EEF38459.1|3.7e-0780.00conserved hypothetical protein [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002898T1MELO3C002898T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002898Cucumber (Chinese Long) v3cucmeB359
MELO3C002898Watermelon (97103) v2mewmbB038
MELO3C002898Wax gourdmewgoB030
MELO3C002898Cucumber (Gy14) v1cgymeB460
MELO3C002898Cucurbita maxima (Rimu)cmameB251
MELO3C002898Cucurbita maxima (Rimu)cmameB634
MELO3C002898Cucurbita moschata (Rifu)cmomeB239
MELO3C002898Cucurbita moschata (Rifu)cmomeB624
MELO3C002898Wild cucumber (PI 183967)cpimeB350
MELO3C002898Cucumber (Chinese Long) v2cumeB361
MELO3C002898Watermelon (Charleston Gray)mewcgB002
MELO3C002898Watermelon (97103) v1mewmB003
MELO3C002898Cucurbita pepo (Zucchini)cpemeB155
MELO3C002898Cucurbita pepo (Zucchini)cpemeB358
MELO3C002898Bottle gourd (USVL1VR-Ls)lsimeB162
MELO3C002898Cucumber (Gy14) v2cgybmeB300
MELO3C002898Silver-seed gourdcarmeB0260
MELO3C002898Silver-seed gourdcarmeB0682