MELO3C002895 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002895
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Myb/SANT-like DNA-binding domain protein
Location	chr9 : 7163164 .. 7163613 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCTCATTGCGTACCCCGAGGCATGTATGGACTAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAAGGATGGAAATACGACAATGGTACATTCTGGCCCAGTTACCTGGCACAACTAGTACGCATGATGGCCGAGAAATTACTAGGATGTCAGGTTCGTGCAACCACTATAATCGACTGCAAAATAAAGACACTGAAGCGGACATTCCAAGCCATCGCAGAAATGTGGGGGCCAGCGTGTAGTGGATTGGATTGGAACGTCGGTGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGGTAAGAAACATAAATTAAACGTCCCGCTACTTACCCAGTGTACATTTACTTCACAAATTTTGTTTAAGTATATGTAAGTGGTCCTCGTTTTTTATGCAGAGCATTCTGTAA

mRNA sequence

ATGGCTACCTCATTGCGTACCCCGAGGCATGTATGGACTAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAAGGATGGAAATACGACAATGGTACATTCTGGCCCAGTTACCTGGCACAACTAGTACGCATGATGGCCGAGAAATTACTAGGATGTCAGGTTCGTGCAACCACTATAATCGACTGCAAAATAAAGACACTGAAGCGGACATTCCAAGCCATCGCAGAAATGTGGGGGCCAGCGTGTAGTGGATTGGATTGGAACGTCGGTGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGAGCATTCTGTAA

Coding sequence (CDS)

ATGGCTACCTCATTGCGTACCCCGAGGCATGTATGGACTAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAAGGATGGAAATACGACAATGGTACATTCTGGCCCAGTTACCTGGCACAACTAGTACGCATGATGGCCGAGAAATTACTAGGATGTCAGGTTCGTGCAACCACTATAATCGACTGCAAAATAAAGACACTGAAGCGGACATTCCAAGCCATCGCAGAAATGTGGGGGCCAGCGTGTAGTGGATTGGATTGGAACGTCGGTGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGAGCATTCTGTAA

Protein sequence

MATSLRTPRHVWTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNWVRSIL*

Homology

[Close]

BLAST of MELO3C002895 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-35
Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 1


Query: 23  CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQVRATTIIDCKIKTLKRTFQAIA 82
           C ++LV M GWK DNGTF P YLAQLVRMMAEKL GCQVRATT+IDC+IKTLKRTFQAIA
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 83  EMWGPACSGLDWNVGAKCIIAEKELFDNWVRS 115
           EM GPACSG  WN   KCI+AEKELFDNWVRS
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVRS 431

[Close]

BLAST of MELO3C002895 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.6e-30
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 1   MATSLRTPRHVWTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQ 60
           M +S R P+H WTKEEE  LVECLV+LV   GW+ DNGTF P YL QL RMMA K+ G  
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNW 112
           + A+T ID +IK +KR F A+AEM GP CSG  WN   KCI+AEKE+FD+W
Sbjct: 416 IHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 465

[Close]

BLAST of MELO3C002895 vs. TrEMBL
Match: E5GBS5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1


Query: 1   MATSLRTPRHVWTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQ 60
           MA+S R  +H+W KE++ TLVECLV LV   GW  DNGTF   Y +QL RMMA+K+ G  
Sbjct: 1   MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNWVRSI 116
           ++ATTI  C IKT+++TF AI+E+ GP+CSG  WN     II EK++FDNW++ +
Sbjct: 61  IQATTIDSC-IKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGL 114

[Close]

BLAST of MELO3C002895 vs. TrEMBL
Match: A0A0A9TMG5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 47/108 (43.52%), Postives = 68/108 (62.96%), Query Frame = 1


Query: 6   RTPRHVWTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQVRATT 65
           + P+H W++ E+  LV CLV L+    WK +NG F   YLAQL + + E++  C+ +   
Sbjct: 14  KNPKHQWSQHEDEHLVHCLVRLIQEGSWKAENG-FCTGYLAQLEKWLHERIPTCEFKGNP 73

Query: 66  IIDCKIKTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNWVR 114
            ID ++KTLKR F AI EM  P+  G  WN   KCI+ +K++FDNWV+
Sbjct: 74  HIDSRLKTLKRQFHAITEMLEPSAGGFGWNDKDKCIVCDKDIFDNWVK 120

[Close]

BLAST of MELO3C002895 vs. TrEMBL
Match: A0A072UYX1_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 1


Query: 12  WTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQVRATTIIDCKI 71
           WT EE+  LV+ L+ LV  +GWK D GTF P Y   L R + +K+  C ++A   I+ ++
Sbjct: 17  WTTEEDAVLVQGLLQLVD-DGWKADAGTFKPGYTKVLERYLLKKIPDCTLKANPHIESRV 76

Query: 72  KTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNWVRS 115
           K LK  + AI +M GP+ SG  WN   K I+ EKE++  W +S
Sbjct: 77  KRLKSHYSAIRDMLGPSASGFGWNDATKTIVVEKEVYRQWCKS 118

[Close]

BLAST of MELO3C002895 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 155.6 bits (392), Expect = 5.3e-35
Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 1


Query: 23  CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQVRATTIIDCKIKTLKRTFQAIA 82
           C ++LV M GWK DNGTF P YLAQLVRMMAEKL GCQVRATT+IDC+IKTLKRTFQAIA
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 83  EMWGPACSGLDWNVGAKCIIAEKELFDNWVRS 115
           EM GPACSG  WN   KCI+AEKELFDNWVRS
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVRS 431

[Close]

BLAST of MELO3C002895 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MATSLRTPRHVWTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQ 60
           MA+  R P+H WTKEEE   VECLV+LV   GW+ DNGTF P YLAQL RMMAEKL G  
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNWVRS 115
           ++ ++ IDC +K+LK+T+ AIAEM GP+CSG  WN   +CIIAE++LFD+W++S
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKS 114

[Close]

BLAST of MELO3C002895 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 75/116 (64.66%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 1   MATSLRTPRHVWTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQ 60
           MA+S R P+H WTKEEE  LVECLV+LV   GW+ DNGTF P YL QL RMMA K+ G  
Sbjct: 202 MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 261

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNWVRSIL 117
           V A+T ID +IK LKR F AIAEM GP CSG  WN   KCI+AEKE+FDNWV+S L
Sbjct: 262 VHAST-IDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHL 316

[Close]

BLAST of MELO3C002895 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 3.2e-32
Identity = 69/114 (60.53%), Postives = 83/114 (72.81%), Query Frame = 1


Query: 1   MATSLRTPRHVWTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQ 60
           M +S R P+H WTKEEE  LVECLV+LV   GW+ DNGTF P YL QL RMMA K+ GC 
Sbjct: 175 MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 234

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNWVRS 115
           + A+T ID +IK +KR F A+AEM GP CSG  WN   KCI+ EKE+FD+WV+S
Sbjct: 235 IHAST-IDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDDWVKS 287

[Close]

BLAST of MELO3C002895 vs. NCBI nr
Match: gi|659082038|ref|XP_008441633.1| (PREDICTED: uncharacterized protein LOC103485713 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 3.0e-30
Identity = 65/113 (57.52%), Postives = 82/113 (72.57%), Query Frame = 1


Query: 1   MATSLRTPRHVWTKEEEGTLVECLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKLLGCQ 60
           M +SLR P+H WTKEEE  LVECLV+LV   GW++DNGTF P YL QL RMM  K+L C 
Sbjct: 1   MTSSLRLPKHSWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLERMMTFKILDCN 60

Query: 61  VRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVGAKCIIAEKELFDNWVR 114
           + A+   D +IK +KR F A+AEM GP CSG  WN   KCI+AEKE+F++W++
Sbjct: 61  IHASP-NDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFNDWIK 112

The following BLAST results are available for this feature:

BLAST of MELO3C002895 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	3.7e-35	80.43	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	3.6e-30	60.36	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBS5_CUCME	6.3e-27	53.04	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A9TMG5_ARUDO	1.7e-19	43.52	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A072UYX1_MEDTR	3.2e-15	41.75	Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 ...	[more]

BLAST of MELO3C002895 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135889\|gb\|ADN33754.1\|	5.3e-35	80.43	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	1.3e-33	59.65	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659118456\|ref\|XP_008459129.1\|	1.1e-32	64.66	PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo]	[more]
gi\|659111306\|ref\|XP_008455685.1\|	3.2e-32	60.53	PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo]	[more]
gi\|659082038\|ref\|XP_008441633.1\|	3.0e-30	57.52	PREDICTED: uncharacterized protein LOC103485713 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002895T1	MELO3C002895T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 9..113 score: 1.0
None	No IPR available	PANTHER	PTHR31704:SF16	SUBFAMILY NOT NAMED	coord: 9..113 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002895	Cucumber (Gy14) v2	cgybmeB300
MELO3C002895	Silver-seed gourd	carmeB0260
MELO3C002895	Silver-seed gourd	carmeB0682
MELO3C002895	Cucumber (Chinese Long) v3	cucmeB359
MELO3C002895	Watermelon (97103) v2	mewmbB038
MELO3C002895	Wax gourd	mewgoB030
MELO3C002895	Cucumber (Gy14) v1	cgymeB460
MELO3C002895	Cucurbita maxima (Rimu)	cmameB251
MELO3C002895	Cucurbita maxima (Rimu)	cmameB634
MELO3C002895	Cucurbita moschata (Rifu)	cmomeB239
MELO3C002895	Cucurbita moschata (Rifu)	cmomeB624
MELO3C002895	Wild cucumber (PI 183967)	cpimeB350
MELO3C002895	Cucumber (Chinese Long) v2	cumeB361
MELO3C002895	Watermelon (Charleston Gray)	mewcgB002
MELO3C002895	Watermelon (97103) v1	mewmB003
MELO3C002895	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C002895	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C002895	Bottle gourd (USVL1VR-Ls)	lsimeB162