MELO3C002893 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C002893
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionVoltage-dependent calcium channel type A subunit alpha-1
Locationchr9 : 7111693 .. 7111926 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACGGATGTGGCTGTGGGGAACATAATGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTAAGAGTCGACGTCGACAACCAGCTCGAAATCGACGACGTCCGGGTTGTGGAACACATCAATTTTCTTTTATCTGA

mRNA sequence

ATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACGGATGTGGCTGTGGGGAACATAATGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTAAGAGTCGACGTCGACAACCAGCTCGAAATCGACGACGTCCGGGTTGTGGAACACATCAATTTTCTTTTATCTGA

Coding sequence (CDS)

ATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACGGATGTGGCTGTGGGGAACATAATGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTAAGAGTCGACGTCGACAACCAGCTCGAAATCGACGACGTCCGGGTTGTGGAACACATCAATTTTCTTTTATCTGA

Protein sequence

MDVGPSTSYMHGHGCGCGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVKSRRRQPARNRRRPGCGTHQFSFI*
Homology
[Close]
BLAST of MELO3C002893 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 1 

Query: 5   PSTSYMHGHGCGCGEHNEYLYHEAPADV---SDRQEY------------QQEPENQEDRE 64
           PS+SYMHGHG G GEHNEYLY++ PA V   SD Q+             QQ+ EN E+ +
Sbjct: 182 PSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 241

Query: 65  QHRVKSRRRQPARNRRRPGCGTH 73
           Q RV+ RRRQ A+NR+RPGCGTH
Sbjct: 242 QQRVQIRRRQLAKNRQRPGCGTH 264

The following BLAST results are available for this feature:
BLAST of MELO3C002893 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|2.4e-1555.42PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002893T1MELO3C002893T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002893Silver-seed gourdcarmeB0260
MELO3C002893Silver-seed gourdcarmeB0682
MELO3C002893Cucumber (Chinese Long) v3cucmeB359
MELO3C002893Watermelon (97103) v2mewmbB038
MELO3C002893Wax gourdmewgoB030
MELO3C002893Cucumber (Gy14) v1cgymeB460
MELO3C002893Cucurbita maxima (Rimu)cmameB251
MELO3C002893Cucurbita maxima (Rimu)cmameB634
MELO3C002893Cucurbita moschata (Rifu)cmomeB239
MELO3C002893Cucurbita moschata (Rifu)cmomeB624
MELO3C002893Wild cucumber (PI 183967)cpimeB350
MELO3C002893Cucumber (Chinese Long) v2cumeB361
MELO3C002893Watermelon (Charleston Gray)mewcgB002
MELO3C002893Watermelon (97103) v1mewmB003
MELO3C002893Cucurbita pepo (Zucchini)cpemeB155
MELO3C002893Cucurbita pepo (Zucchini)cpemeB358
MELO3C002893Bottle gourd (USVL1VR-Ls)lsimeB162
MELO3C002893Cucumber (Gy14) v2cgybmeB300