MELO3C002887 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002887
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative auxin efflux carrier component 8
Location	chr9 : 7008930 .. 7010201 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGAAACGAATTTCATTTAGTATAAAAATGAGGTAGAGCTCAAGGTACAAGAGGGTTATACAATGAGCAATTAACGAACTAGGGATCAGTAGACGCACCTGAACGTCTTAACTAGGTCAACACCCCTTAATGTCCTCATCATATTCGAAAATCGAGAAGTGAAATGACATAGAGCTAGTAAAAGTGATCCAAAACATAAGAACTTTACATCAGCAGCCTATCATGAACAAAAGACTAAAAGAAAAATCTAAACCGGGCAAGAAAAATCTAAACGGGCAAAAACAGATCCTTGCCTAACTCTCCTTTGCTAGACTTGTCAGTTGAGATGAATGTCCTTTGAACATGATTAACTATTCGAAGGCTAAAATCAAGGTTAGTCAAAACCTGTGTGGTTTCTTGCCCGCAACGGTTGAGTTAAGAGATGAAAATCAGGGCAATATTTTTTTCAATTTTGGGGACTTCGAAGCACTGGAAGACCCAAAAGTGATTGAAGGAGCAATGGTCGAGTTAAGAGATGAAAATCAGGGCAATATTTTTTTCAATTTTGGGGACTTCGAAGCACTGGAAGACCCGAAAGTGAATGAAGGAGCAATGTTCTTAAAAGACTTTGCTAATCCGATTGATTTAATGAGACTAAATCAAGTTCTTTTAGATGAAGAGGAAGATTTGAATACTTCGAATTCCAAATGGCGCTTCCTTCTACTTCACTTTCAAAACCTGGTTTCTAAAGGAATCCCTTCGAGGCCTTGCAAGAAAAGGATGATCGTGGAGGGTTGGGTGAGTCTTCATCTTCTTCTCATCGGAAAAATCAGATTGTCGGAAAAAAAACCAAAGAAGAGGAACAAACCAGCCGTGAATTCCGCTGAGGAAGTTAAAAAGTTGCCTTCAATGATGACAGAGAAAAGTATGGCCAAGTCCTTTATTTCGCCCAATGAGAATTCAAGTCTTAATAAGGTGGATATTCACGATTTAAAGTTTATTTTAAGTGTTTCTCTCAAGAAGGCAGCCCAAAAGGCAAGTGGGCCCATCCCATCCAACCGAATCTCGTCCAGCAGCATGTCATCGTCCCCGGATCATTTAGCACTTCCTTTAATTGCATTATCAGAGACCAACAAAGACTATGCCGTCAAGGGAACAAGTAATCCTTTCTCTTCTCATTCAAATTCTTCTTCAGCAGCCAGAATCAGAGGTAGATTGAAGGTCAAACGAAGTTCCAAAACAGCAAAAAGTAGTGCATTCTTTCATTTCTTTCCCAAAGCATTTTGTTAG

mRNA sequence

AAAAGGAAACGAATTTCATTTAGTATAAAAATGAGGTAGAGCTCAAGGTACAAGAGGGTTATACAATGAGCAATTAACGAACTAGGGATCAGTAGACGCACCTGAACGTCTTAACTAGGTCAACACCCCTTAATGTCCTCATCATATTCGAAAATCGAGAAGTGAAATGACATAGAGCTAGTAAAAGTGATCCAAAACATAAGAACTTTACATCAGCAGCCTATCATGAACAAAAGACTAAAAGAAAAATCTAAACCGGGCAAGAAAAATCTAAACGGGCAAAAACAGATCCTTGCCTAACTCTCCTTTGCTAGACTTGTCAGTTGAGATGAATGTCCTTTGAACATGATTAACTATTCGAAGGCTAAAATCAAGGTTAGTCAAAACCTGTGTGGTTTCTTGCCCGCAACGGTTGAGTTAAGAGATGAAAATCAGGGCAATATTTTTTTCAATTTTGGGGACTTCGAAGCACTGGAAGACCCAAAAGTGATTGAAGGAGCAATGGTCGAGTTAAGAGATGAAAATCAGGGCAATATTTTTTTCAATTTTGGGGACTTCGAAGCACTGGAAGACCCGAAAGTGAATGAAGGAGCAATGTTCTTAAAAGACTTTGCTAATCCGATTGATTTAATGAGACTAAATCAAGTTCTTTTAGATGAAGAGGAAGATTTGAATACTTCGAATTCCAAATGGCGCTTCCTTCTACTTCACTTTCAAAACCTGGTTTCTAAAGGAATCCCTTCGAGGCCTTGCAAGAAAAGGATGATCGTGGAGGGTTGGGTGAGTCTTCATCTTCTTCTCATCGGAAAAATCAGATTGTCGGAAAAAAAACCAAAGAAGAGGAACAAACCAGCCGTGAATTCCGCTGAGGAAGTTAAAAAGTTGCCTTCAATGATGACAGAGAAAAGTATGGCCAAGTCCTTTATTTCGCCCAATGAGAATTCAAGTCTTAATAAGGTGGATATTCACGATTTAAAGTTTATTTTAAGTGTTTCTCTCAAGAAGGCAGCCCAAAAGGCAAGTGGGCCCATCCCATCCAACCGAATCTCGTCCAGCAGCATGTCATCGTCCCCGGATCATTTAGCACTTCCTTTAATTGCATTATCAGAGACCAACAAAGACTATGCCGTCAAGGGAACAAGTAATCCTTTCTCTTCTCATTCAAATTCTTCTTCAGCAGCCAGAATCAGAGGTAGATTGAAGGTCAAACGAAGTTCCAAAACAGCAAAAAGTAGTGCATTCTTTCATTTCTTTCCCAAAGCATTTTGTTAG

Coding sequence (CDS)

ATGATTAACTATTCGAAGGCTAAAATCAAGGTTAGTCAAAACCTGTGTGGTTTCTTGCCCGCAACGGTTGAGTTAAGAGATGAAAATCAGGGCAATATTTTTTTCAATTTTGGGGACTTCGAAGCACTGGAAGACCCAAAAGTGATTGAAGGAGCAATGGTCGAGTTAAGAGATGAAAATCAGGGCAATATTTTTTTCAATTTTGGGGACTTCGAAGCACTGGAAGACCCGAAAGTGAATGAAGGAGCAATGTTCTTAAAAGACTTTGCTAATCCGATTGATTTAATGAGACTAAATCAAGTTCTTTTAGATGAAGAGGAAGATTTGAATACTTCGAATTCCAAATGGCGCTTCCTTCTACTTCACTTTCAAAACCTGGTTTCTAAAGGAATCCCTTCGAGGCCTTGCAAGAAAAGGATGATCGTGGAGGGTTGGGTGAGTCTTCATCTTCTTCTCATCGGAAAAATCAGATTGTCGGAAAAAAAACCAAAGAAGAGGAACAAACCAGCCGTGAATTCCGCTGAGGAAGTTAAAAAGTTGCCTTCAATGATGACAGAGAAAAGTATGGCCAAGTCCTTTATTTCGCCCAATGAGAATTCAAGTCTTAATAAGGTGGATATTCACGATTTAAAGTTTATTTTAAGTGTTTCTCTCAAGAAGGCAGCCCAAAAGGCAAGTGGGCCCATCCCATCCAACCGAATCTCGTCCAGCAGCATGTCATCGTCCCCGGATCATTTAGCACTTCCTTTAATTGCATTATCAGAGACCAACAAAGACTATGCCGTCAAGGGAACAAGTAATCCTTTCTCTTCTCATTCAAATTCTTCTTCAGCAGCCAGAATCAGAGGTAGATTGAAGGTCAAACGAAGTTCCAAAACAGCAAAAAGTAGTGCATTCTTTCATTTCTTTCCCAAAGCATTTTGTTAG

Protein sequence

MINYSKAKIKVSQNLCGFLPATVELRDENQGNIFFNFGDFEALEDPKVIEGAMVELRDENQGNIFFNFGDFEALEDPKVNEGAMFLKDFANPIDLMRLNQVLLDEEEDLNTSNSKWRFLLLHFQNLVSKGIPSRPCKKRMIVEGWVSLHLLLIGKIRLSEKKPKKRNKPAVNSAEEVKKLPSMMTEKSMAKSFISPNENSSLNKVDIHDLKFILSVSLKKAAQKASGPIPSNRISSSSMSSSPDHLALPLIALSETNKDYAVKGTSNPFSSHSNSSSAARIRGRLKVKRSSKTAKSSAFFHFFPKAFC*

Homology

[Close]

BLAST of MELO3C002887 vs. TrEMBL
Match: A0A0A0KNJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G492860 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-36
Identity = 88/117 (75.21%), Postives = 95/117 (81.20%), Query Frame = 1


Query: 183 MMTEKSMAKSFISPNENSSLNKVDIHDLKFILSVSLKKAAQKASGPIPSNRISSSSMSSS 242
           MMTEKS  KSFISPNENSSLNKVD+ DLK I  VSLK  AQK SGPIPSN+ISSSS S S
Sbjct: 1   MMTEKSTTKSFISPNENSSLNKVDLQDLKLISGVSLKMKAQKESGPIPSNQISSSSESLS 60

Query: 243 PDHLALPLIALSETNKDYAVKGTSNPFSSHSNSSSA----ARIRGRLKVKRSSKTAK 296
           P+ LALP +ALSETNKD A+KGTSN FSSHSNSSSA    ARI+GR +VKRSSK  K
Sbjct: 61  PNQLALPSVALSETNKDCAIKGTSNSFSSHSNSSSAISSSARIKGRSEVKRSSKKQK 117

[Close]

BLAST of MELO3C002887 vs. NCBI nr
Match: gi|700196038|gb|KGN51215.1| (hypothetical protein Csa_5G492860 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 7.4e-36
Identity = 88/117 (75.21%), Postives = 95/117 (81.20%), Query Frame = 1


Query: 183 MMTEKSMAKSFISPNENSSLNKVDIHDLKFILSVSLKKAAQKASGPIPSNRISSSSMSSS 242
           MMTEKS  KSFISPNENSSLNKVD+ DLK I  VSLK  AQK SGPIPSN+ISSSS S S
Sbjct: 1   MMTEKSTTKSFISPNENSSLNKVDLQDLKLISGVSLKMKAQKESGPIPSNQISSSSESLS 60

Query: 243 PDHLALPLIALSETNKDYAVKGTSNPFSSHSNSSSA----ARIRGRLKVKRSSKTAK 296
           P+ LALP +ALSETNKD A+KGTSN FSSHSNSSSA    ARI+GR +VKRSSK  K
Sbjct: 61  PNQLALPSVALSETNKDCAIKGTSNSFSSHSNSSSAISSSARIKGRSEVKRSSKKQK 117

The following BLAST results are available for this feature:

BLAST of MELO3C002887 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNJ6_CUCSA	5.2e-36	75.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G492860 PE=4 SV=1	[more]

BLAST of MELO3C002887 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196038\|gb\|KGN51215.1\|	7.4e-36	75.21	hypothetical protein Csa_5G492860 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002887T1	MELO3C002887T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002887	Csa5G492860	Cucumber (Chinese Long) v2	cumeB361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002887	Watermelon (97103) v2	mewmbB038
MELO3C002887	Wax gourd	mewgoB030
MELO3C002887	Cucumber (Gy14) v1	cgymeB460
MELO3C002887	Cucurbita maxima (Rimu)	cmameB251
MELO3C002887	Cucurbita maxima (Rimu)	cmameB634
MELO3C002887	Cucurbita moschata (Rifu)	cmomeB239
MELO3C002887	Cucurbita moschata (Rifu)	cmomeB624
MELO3C002887	Wild cucumber (PI 183967)	cpimeB350
MELO3C002887	Watermelon (Charleston Gray)	mewcgB002
MELO3C002887	Watermelon (97103) v1	mewmB003
MELO3C002887	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C002887	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C002887	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C002887	Cucumber (Gy14) v2	cgybmeB300
MELO3C002887	Silver-seed gourd	carmeB0260
MELO3C002887	Silver-seed gourd	carmeB0682
MELO3C002887	Cucumber (Chinese Long) v3	cucmeB359