MELO3C002833.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002833.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr12 : 19918076 .. 19919001 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCCTTCGCTGAAGAACGCCTCTGCCGAAGAACCCCTCCGCCAAATCTTCAACGACGAATCCGTTGATTCTTTACAACCGACAACCGCTGCGCCGCCACAGTCCCACCTGAAAAGCTTACCCAACGTCGCCGGATTTGGGTTTTAACGACACTAGTAATCAAATTATTGTGTCGTTAAAAGTTAAAAGGGTGGGGTGGAAGAAAAATGTGTCGTTAAAACTAACAAATGCAGAATTTTTAACGACACATTTTTCTCGTCGTTATTTAATGTTTCTTGACAAAAATTTTGTGTCGCTAATTAACAACATAATCTATGTGTCATTAAAAGGTTATTCAAATAAAAAAATAATTTTATTAATTCTTGACACAAATTTCCTTGACAAAAATTTTGCGTTCCTAATTAACGACATAATTAAAGTGTCATTAAAAAGTTATTCAAATAAAAAAAATAATTTTCTTATTTCTTGACACAAATTATATGTGTAAAAAAAAATCCCTAATTAGTTTTGTGTTTGCGCCGCCTGCTGCCTTCCGACGTCGTCTCTCTCAATCCAATCACCGCCGTCGTCTCCCTCTGCCATCCACCACTCTCAGACCTCAACCGTCGTCTCCCTCCGCCATCCACCACTCCCAAACCTCAGTCGTCGTCTCCCTCTGCCATCCACCACTCCCAGCCCTCAGACCTCAGCCGTATACGATTTTCGGTCGCCGAATCACTCGAACAATCCAACAGATTATCATCGTTTTCTCCCTCCGCCATCCACCGCTCGCATTTGGTTTGCCGCCGTCGAATCACTCGAACAATCCAACCGCTCGCAGACATCCTCTATCGAGTTCTTCATACCACCTCGTCTGCCTATTGAATTATCACCCTCCGTCGTCTTCCTCCAAGAGATTTTTGCCAAATCGTTCAGCAAGGTAA

mRNA sequence

ATGACCCCTTCGCTGAAGAACGCCTCTGCCGAAGAACCCCTCCGCCAAATCTTCAACGACGAATCCGTTGATTCTTTACAACCGACAACCGCTGCGCCGCCACAGTCCCACCTGAAAAGCTTACCCAACGTCGCCGGATTTGGACCTCAACCGTCGTCTCCCTCCGCCATCCACCACTCCCAAACCTCAGTCGTCGTCTCCCTCTGCCATCCACCACTCCCAGCCCTCAGACCTCAGCCGTATACGATTTTCGGTCGCCGAATCACTCGAACAATCCAACAGATTATCATCGTTTTCTCCCTCCGCCATCCACCGCTCGCATTTGGTTTGCCGCCGTCGAATCACTCGAACAATCCAACCGCTCGCAGACATCCTCTATCGAGTTCTTCATACCACCTCGTCTGCCTATTGAATTATCACCCTCCGTCGTCTTCCTCCAAGAGATTTTTGCCAAATCGTTCAGCAAGGTAA

Coding sequence (CDS)

ATGACCCCTTCGCTGAAGAACGCCTCTGCCGAAGAACCCCTCCGCCAAATCTTCAACGACGAATCCGTTGATTCTTTACAACCGACAACCGCTGCGCCGCCACAGTCCCACCTGAAAAGCTTACCCAACGTCGCCGGATTTGGACCTCAACCGTCGTCTCCCTCCGCCATCCACCACTCCCAAACCTCAGTCGTCGTCTCCCTCTGCCATCCACCACTCCCAGCCCTCAGACCTCAGCCGTATACGATTTTCGGTCGCCGAATCACTCGAACAATCCAACAGATTATCATCGTTTTCTCCCTCCGCCATCCACCGCTCGCATTTGGTTTGCCGCCGTCGAATCACTCGAACAATCCAACCGCTCGCAGACATCCTCTATCGAGTTCTTCATACCACCTCGTCTGCCTATTGAATTATCACCCTCCGTCGTCTTCCTCCAAGAGATTTTTGCCAAATCGTTCAGCAAGGTAA

Protein sequence

MTPSLKNASAEEPLRQIFNDESVDSLQPTTAAPPQSHLKSLPNVAGFGPQPSSPSAIHHSQTSVVVSLCHPPLPALRPQPYTIFGRRITRTIQQIIIVFSLRHPPLAFGLPPSNHSNNPTARRHPLSSSSYHLVCLLNYHPPSSSSKRFLPNRSAR

Homology

[Close]

BLAST of MELO3C002833.2 vs. NCBI nr
Match: XP_008458918.1 (PREDICTED: uncharacterized protein LOC103498180 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 80/103 (77.67%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 52  SSPSAIHHSQTSVVVSLCHPPLPALRPQPYTIFGRRITRTIQQIIIVFSLRHPPLAFGLP 111
           SSPSAIH SQT  VVSL HPPL ALRPQPYTIFGRRITRTIQ I+ VFSL HPPLAF   
Sbjct: 28  SSPSAIHRSQTLAVVSLRHPPLTALRPQPYTIFGRRITRTIQPIVAVFSLHHPPLAFDFR 87

Query: 112 PSNHSNNPTARRHPLSSSSYHLVCLLNYHPPSSSSKRFLPNRS 155
           P NHSNNPTARR P SS SYHLVCLLNY     SSKRFLP+ S
Sbjct: 88  PPNHSNNPTARRRPPSSPSYHLVCLLNYXXXXXSSKRFLPSFS 130

[Close]

BLAST of MELO3C002833.2 vs. TrEMBL
Match: tr|A0A1S3CA88|A0A1S3CA88_CUCME (uncharacterized protein LOC103498180 OS=Cucumis melo OX=3656 GN=LOC103498180 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.0e-35
Identity = 80/103 (77.67%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 52  SSPSAIHHSQTSVVVSLCHPPLPALRPQPYTIFGRRITRTIQQIIIVFSLRHPPLAFGLP 111
           SSPSAIH SQT  VVSL HPPL ALRPQPYTIFGRRITRTIQ I+ VFSL HPPLAF   
Sbjct: 28  SSPSAIHRSQTLAVVSLRHPPLTALRPQPYTIFGRRITRTIQPIVAVFSLHHPPLAFDFR 87

Query: 112 PSNHSNNPTARRHPLSSSSYHLVCLLNYHPPSSSSKRFLPNRS 155
           P NHSNNPTARR P SS SYHLVCLLNY     SSKRFLP+ S
Sbjct: 88  PPNHSNNPTARRRPPSSPSYHLVCLLNYXXXXXSSKRFLPSFS 130

The following BLAST results are available for this feature:

BLAST of MELO3C002833.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458918.1	1.1e-34	77.67	PREDICTED: uncharacterized protein LOC103498180 [Cucumis melo]	[more]

BLAST of MELO3C002833.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C002833.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C002833.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CA88\|A0A1S3CA88_CUCME	7.0e-35	77.67	uncharacterized protein LOC103498180 OS=Cucumis melo OX=3656 GN=LOC103498180 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002833.2.1	MELO3C002833.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002833.2	Wax gourd	medwgoB161
MELO3C002833.2	Wax gourd	medwgoB167
MELO3C002833.2	Cucumber (Gy14) v2	cgybmedB012
MELO3C002833.2	Cucumber (Gy14) v2	cgybmedB026
MELO3C002833.2	Cucumber (Gy14) v1	cgymedB289
MELO3C002833.2	Cucumber (Gy14) v1	cgymedB290
MELO3C002833.2	Cucurbita maxima (Rimu)	cmamedB213
MELO3C002833.2	Cucurbita maxima (Rimu)	cmamedB423
MELO3C002833.2	Cucurbita moschata (Rifu)	cmomedB201
MELO3C002833.2	Cucurbita moschata (Rifu)	cmomedB408
MELO3C002833.2	Cucurbita pepo (Zucchini)	cpemedB031
MELO3C002833.2	Cucurbita pepo (Zucchini)	cpemedB559
MELO3C002833.2	Wild cucumber (PI 183967)	cpimedB027
MELO3C002833.2	Wild cucumber (PI 183967)	cpimedB015
MELO3C002833.2	Cucumber (Chinese Long) v2	cumedB013
MELO3C002833.2	Melon (DHL92) v3.6.1	medmedB075
MELO3C002833.2	Bottle gourd (USVL1VR-Ls)	lsimedB189
MELO3C002833.2	Watermelon (Charleston Gray)	medwcgB145
MELO3C002833.2	Watermelon (97103) v1	medwmB146
MELO3C002833.2	Silver-seed gourd	carmedB0405
MELO3C002833.2	Silver-seed gourd	carmedB0432
MELO3C002833.2	Cucumber (Chinese Long) v3	cucmedB027
MELO3C002833.2	Cucumber (Chinese Long) v3	cucmedB012
MELO3C002833.2	Cucumber (Chinese Long) v3	cucmedB456
MELO3C002833.2	Watermelon (97103) v2	medwmbB135
MELO3C002833.2	Watermelon (97103) v2	medwmbB146