MELO3C002825 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002825
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Small RNA 2'-O-methyltransferase-like protein
Location	chr12 : 18908496 .. 18909462 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATTGCGCTGGTTTCATTTTGGAAAACAAGATGAAGTGATTCCTCATGCTTTCCCTTTAAAATTTTCTTTTGACGATCTTTGTCTCTCTACTCTCTATTTGTTACAGTTTCTTTCAGCCCTTCACCCACTCAGTGGTCACTTTAGAGATGCTATGCAGAGAGAAGGAGATTGTCATTGTTTAGTTCCTATCTCGGTTATTTTTGCTTATGATGCAAGGATTTGTAATTTGTCTAAATGGATCGATCCTCACATGGAGTCAAATCCATACTTGGTTATCCCATGTATCTTGAGGGCAGCTGCAAAATTATCTGAATCCCTTTCTGCTCCTAAAGGACAACTTTCACTTCAAAGGAAAAATCCTTACCCTTCTGAAGTTATAGCATCATCAGTTATTGAGCCCTCTCTTTCTTCTAAAAGATCTTTGATTGAAGTGGTGCATATTCCACATTTTCTTGACAAGCCTGTAGAAAGTATAACCCTCGACCTTTCTCCAACTGGGTATTACCTGGATCTTATTGCCAAGCAACTTGGCTTGTGTGATGCAGCCAAGGTTTTCATCTCAAGGTTGGTGATAGTCATGATATGTCAAGATGCTAGAAGATGGTTCCTTAATATTATTAGATGCTTGGTCCCTTCTTCATATAAATTGTTCCTATGCTAGCTAATTCATCATCTTTCTTTTCTGTAGGCCTGTTGGTAGAGCTTCCTCTGAAACAAGATTGTACTTTGCGGCTTCTGAAACTTTTCTATCGGATCTACCTTCAGATCTTTTAGACTTCAAAGAAGCTCTTCACTTTAGAGAACCATTGAATGCAAGAGCAACTTATTTATGTGGTCAAGATATATATGGAGATGCAATTTTAGCAAACATTGGGTACACGTGGAAGAGTAAAGATCTTTCTTATGAGAACATTGGCTTGCAATCATATTACAGGTCTCTTCTAGTTTCTGTTTTCAATTGA

mRNA sequence

ATGCTATTGCGCTGGTTTCATTTTGGAAAACAAGATGAAGTGATTCCTCATGCTTTCCCTTTAAAATTTTCTTTTGACGATCTTTGTCTCTCTACTCTCTATTTGTTACAGTTTCTTTCAGCCCTTCACCCACTCAGTGGTCACTTTAGAGATGCTATGCAGAGAGAAGGAGATTGTCATTGTTTAGTTCCTATCTCGGTTATTTTTGCTTATGATGCAAGGATTTGTAATTTGTCTAAATGGATCGATCCTCACATGGAGTCAAATCCATACTTGGTTATCCCATGTATCTTGAGGGCAGCTGCAAAATTATCTGAATCCCTTTCTGCTCCTAAAGGACAACTTTCACTTCAAAGGAAAAATCCTTACCCTTCTGAAGTTATAGCATCATCAGTTATTGAGCCCTCTCTTTCTTCTAAAAGATCTTTGATTGAAGTGGTGCATATTCCACATTTTCTTGACAAGCCTGTAGAAAGTATAACCCTCGACCTTTCTCCAACTGGGTATTACCTGGATCTTATTGCCAAGCAACTTGGCTTGTGTGATGCAGCCAAGGTTTTCATCTCAAGGCCTGTTGGTAGAGCTTCCTCTGAAACAAGATTGTACTTTGCGGCTTCTGAAACTTTTCTATCGGATCTACCTTCAGATCTTTTAGACTTCAAAGAAGCTCTTCACTTTAGAGAACCATTGAATGCAAGAGCAACTTATTTATGTGGTCAAGATATATATGGAGATGCAATTTTAGCAAACATTGGGTACACGTGGAAGAGTAAAGATCTTTCTTATGAGAACATTGGCTTGCAATCATATTACAGGTCTCTTCTAGTTTCTGTTTTCAATTGA

Coding sequence (CDS)

ATGCTATTGCGCTGGTTTCATTTTGGAAAACAAGATGAAGTGATTCCTCATGCTTTCCCTTTAAAATTTTCTTTTGACGATCTTTGTCTCTCTACTCTCTATTTGTTACAGTTTCTTTCAGCCCTTCACCCACTCAGTGGTCACTTTAGAGATGCTATGCAGAGAGAAGGAGATTGTCATTGTTTAGTTCCTATCTCGGTTATTTTTGCTTATGATGCAAGGATTTGTAATTTGTCTAAATGGATCGATCCTCACATGGAGTCAAATCCATACTTGGTTATCCCATGTATCTTGAGGGCAGCTGCAAAATTATCTGAATCCCTTTCTGCTCCTAAAGGACAACTTTCACTTCAAAGGAAAAATCCTTACCCTTCTGAAGTTATAGCATCATCAGTTATTGAGCCCTCTCTTTCTTCTAAAAGATCTTTGATTGAAGTGGTGCATATTCCACATTTTCTTGACAAGCCTGTAGAAAGTATAACCCTCGACCTTTCTCCAACTGGGTATTACCTGGATCTTATTGCCAAGCAACTTGGCTTGTGTGATGCAGCCAAGGTTTTCATCTCAAGGCCTGTTGGTAGAGCTTCCTCTGAAACAAGATTGTACTTTGCGGCTTCTGAAACTTTTCTATCGGATCTACCTTCAGATCTTTTAGACTTCAAAGAAGCTCTTCACTTTAGAGAACCATTGAATGCAAGAGCAACTTATTTATGTGGTCAAGATATATATGGAGATGCAATTTTAGCAAACATTGGGTACACGTGGAAGAGTAAAGATCTTTCTTATGAGAACATTGGCTTGCAATCATATTACAGGTCTCTTCTAGTTTCTGTTTTCAATTGA

Protein sequence

MLLRWFHFGKQDEVIPHAFPLKFSFDDLCLSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESNPYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHIPHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETFLSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQSYYRSLLVSVFN*

Homology

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BLAST of MELO3C002825 vs. Swiss-Prot
Match: HEN1_ARATH (Small RNA 2'-O-methyltransferase OS=Arabidopsis thaliana GN=HEN1 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.0e-44
Identity = 112/267 (41.95%), Postives = 163/267 (61.05%), Query Frame = 1


Query: 11  QDEVIPHAFPLKFSFDDLCLSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFA 70
           +DE++     +K+ F D         +FLSA HPL  H R A++R+G+    VP+SVI  
Sbjct: 100 RDEIVGR---IKYIFSD---------EFLSAEHPLGAHLRAALRRDGERCGSVPVSVIAT 159

Query: 71  YDARICNLSKWIDPHMESNPYLVIPCILRAAAKLSESLSA-PKGQLSLQRKNPYPSEVIA 130
            DA+I +  K I+P +ES+P+L I  +++AAAKL++ + A P G   L+RKN YPSE++ 
Sbjct: 160 VDAKINSRCKIINPSVESDPFLAISYVMKAAAKLADYIVASPHG---LRRKNAYPSEIVE 219

Query: 131 SSVIEPSLSSKRSLIEVVHIPHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFIS 190
           +     S S     +  V+IP   ++ VE  TL +S   +YLD IA++LGL D  +V IS
Sbjct: 220 ALATHVSDSLHSREVAAVYIPCIDEEVVELDTLYISSNRHYLDSIAERLGLKDGNQVMIS 279

Query: 191 RPVGRAS--SETRLYFAASETFLSDLPSDL--LDFKEALHFREPLNARATYLCGQDIYGD 250
           R  G+AS  SE RLY    + +L D  SD      +++ H  +  NARA+Y+CGQDI+GD
Sbjct: 280 RMFGKASCGSECRLYSEIPKKYL-DNSSDASGTSNEDSSHIVKSRNARASYICGQDIHGD 339

Query: 251 AILANIGYTWKSKDLSYENIGLQSYYR 273
           AILA++GY WKS DL Y+++ + S+YR
Sbjct: 340 AILASVGYRWKSDDLDYDDVTVNSFYR 350

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BLAST of MELO3C002825 vs. TrEMBL
Match: A0A0A0LYI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537600 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 5.2e-128
Identity = 231/246 (93.90%), Postives = 239/246 (97.15%), Query Frame = 1


Query: 30  LSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESN 89
           ++ L+  +FLSALHPLSGHFRDAMQREGD HCLVPISVIFAYDARICNLSKWIDPH+ESN
Sbjct: 181 INYLFSSEFLSALHPLSGHFRDAMQREGDSHCLVPISVIFAYDARICNLSKWIDPHVESN 240

Query: 90  PYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHI 149
           PYLVIPCILRAAAKLSESLSAP GQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVV I
Sbjct: 241 PYLVIPCILRAAAKLSESLSAPNGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVLI 300

Query: 150 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETF 209
           PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRP+GRASSETRLYFAASETF
Sbjct: 301 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPIGRASSETRLYFAASETF 360

Query: 210 LSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 269
           LSDLPSDLLDFK+ALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS
Sbjct: 361 LSDLPSDLLDFKKALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 420

Query: 270 YYRSLL 276
           YYR L+
Sbjct: 421 YYRMLI 426

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BLAST of MELO3C002825 vs. TrEMBL
Match: M5X724_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000980mg PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.6e-68
Identity = 135/246 (54.88%), Postives = 185/246 (75.20%), Query Frame = 1


Query: 30  LSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESN 89
           +S L+  +FLS LHPLSGHFR A+QR+GD    +P SVI  +DA +CN+ K +DP +ESN
Sbjct: 102 VSFLFSDEFLSTLHPLSGHFRAALQRDGDLSGQIPASVIAIFDATLCNMCKSLDPKVESN 161

Query: 90  PYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHI 149
           P+LVI  ++RAAA+LSE +S  + +L  +R+NPY  E + SS I+   S++   IE +++
Sbjct: 162 PFLVILYVVRAAARLSELISTSEEELWFRRRNPYAPETVESSSIQQLGSTEIFSIEAINV 221

Query: 150 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETF 209
           P  L+K VE + L++S +GY+LD+IAKQLGL   + V ISRP+G+ASSETRLYFAA + +
Sbjct: 222 PSSLEKTVERVILNVSSSGYFLDVIAKQLGLSKTSDVLISRPMGKASSETRLYFAAPKQY 281

Query: 210 LSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 269
           L D+ SDLL+ KEA +    LNARA+YL GQDIYGDAILA+IGYTW+SKDL YE++ LQS
Sbjct: 282 LLDMSSDLLNAKEACNSEGSLNARASYLSGQDIYGDAILASIGYTWRSKDLFYEDVTLQS 341

Query: 270 YYRSLL 276
           Y+R ++
Sbjct: 342 YHRMVI 347

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BLAST of MELO3C002825 vs. TrEMBL
Match: B9GH09_POPTR (Corymbosa 2 family protein OS=Populus trichocarpa GN=POPTR_0001s46980g PE=4 SV=2)

HSP 1 Score: 259.2 bits (661), Expect = 5.7e-66
Identity = 127/246 (51.63%), Postives = 183/246 (74.39%), Query Frame = 1


Query: 33  LYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESNPYL 92
           L+  +FLS+LHPLSGH R A+QR+G  + L+P SVI A D +  NL K ++  +ES P+L
Sbjct: 122 LFTDEFLSSLHPLSGHLRAALQRKGGLYGLIPASVIAACDTKTSNLCKLLNTEVESKPFL 181

Query: 93  VIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHIPHF 152
            +  I+RA  +LS S+   KGQLS+Q++NPYP+E+I SS I+ S S +  L++ + IP  
Sbjct: 182 ALSSIMRAIPRLSGSVVTSKGQLSIQKQNPYPTEIIESSDIQQSGSPENILVKAIQIPAS 241

Query: 153 LDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETFLSD 212
           LD+ ++ +TLD+S +GYYLD+IA++LG+ DA+KV +SR +G+ASSETRLYFAASE+ + +
Sbjct: 242 LDETIQPVTLDISSSGYYLDVIAQKLGVTDASKVLLSRIIGKASSETRLYFAASESLVME 301

Query: 213 LPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQSYYR 272
           L SD  + K+  H    LNARA Y CGQ+IYGDAI+A++GYTW+SK+L +E++ LQSYYR
Sbjct: 302 LLSDHANLKD-FHVEGLLNARANYFCGQEIYGDAIMASVGYTWRSKELFHEDVSLQSYYR 361

Query: 273 SLLVSV 279
            L+  +
Sbjct: 362 MLISKI 366

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BLAST of MELO3C002825 vs. TrEMBL
Match: F6HLY7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g05070 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-63
Identity = 135/250 (54.00%), Postives = 183/250 (73.20%), Query Frame = 1


Query: 30  LSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESN 89
           LS L+  +FLS+LHPLSGHFR A+QR+GD + L+P+SV    D ++ N+ K I+P +ESN
Sbjct: 112 LSYLFADEFLSSLHPLSGHFRAALQRDGDLYGLIPVSVFAVCDTKLGNICKSINPGVESN 171

Query: 90  PYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSL-IEVVH 149
           P+LVIP +L+AAA  S S +  +GQL ++R+NPYP E+I SS I   LSS  S+ IE V+
Sbjct: 172 PFLVIPLVLKAAA--SGSFATSEGQLWMRRQNPYPPEIIQSS-ISSQLSSPESIWIEAVY 231

Query: 150 IPHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASET 209
           IP+ L+K VES+TL++S TGYYLD IA++L L D +K+ +SR VG+ASSE RLYF+A E 
Sbjct: 232 IPYSLEKNVESLTLNVSSTGYYLDAIARKLSLADTSKILVSRTVGKASSEMRLYFSAPEW 291

Query: 210 FLSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQ 269
           +L DL SD L+ +E        NARA+Y  G  IYG+AILA+IGYTW+S DL +E++ LQ
Sbjct: 292 YLVDLLSD-LNVEEVNSEEGSFNARASYFSGHAIYGNAILASIGYTWRSMDLFHEDVSLQ 351

Query: 270 SYYRSLLVSV 279
           SYYR L+  +
Sbjct: 352 SYYRLLISKI 357

[Close]

BLAST of MELO3C002825 vs. TrEMBL
Match: A0A061GET0_THECC (Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 1 OS=Theobroma cacao GN=TCM_026937 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.2e-61
Identity = 128/257 (49.81%), Postives = 183/257 (71.21%), Query Frame = 1


Query: 24  SFDDLCLSTLYLL--QFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKW 83
           ++ DL     Y+   +FL+ LHPLS HF+ A+ R GD    +P SVI   D ++ NL K 
Sbjct: 106 AWTDLIARVKYIFSNEFLAGLHPLSSHFKAALCRVGDHDGSIPASVIAICDGKLNNLCKI 165

Query: 84  IDPHMESNPYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKR 143
           I+P +ES+P++V+  I+RAA  L E +  P+ QLS++++NPYP +VI SSV   S  S+ 
Sbjct: 166 INPKVESHPFMVVSYIMRAATGLPELVVNPERQLSIRKENPYPPDVIESSV---SQQSES 225

Query: 144 SLIEVVHIPHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRL 203
                ++IP   +K VE + L++SP GYYLD+IA++LGL DA ++ ISR +G+ASSETR 
Sbjct: 226 ITTMAIYIPCSPEKAVEPVILNISPKGYYLDVIAQKLGLSDANEILISRTIGKASSETRF 285

Query: 204 YFAASETFLSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLS 263
           YFAAS+++L ++ SDLL+ K A+ F  PLNARA+Y+CGQDIYGD+ILA+IGYTWK +DL 
Sbjct: 286 YFAASKSYLLEMSSDLLNAK-AVKFGGPLNARASYICGQDIYGDSILASIGYTWKGQDLF 345

Query: 264 YENIGLQSYYRSLLVSV 279
           +E++ LQSYYR L+  +
Sbjct: 346 HEDVTLQSYYRMLISKI 358

[Close]

BLAST of MELO3C002825 vs. TAIR10
Match: AT4G20910.1 (AT4G20910.1 double-stranded RNA binding protein-related / DsRBD protein-related)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-45
Identity = 112/267 (41.95%), Postives = 163/267 (61.05%), Query Frame = 1


Query: 11  QDEVIPHAFPLKFSFDDLCLSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFA 70
           +DE++     +K+ F D         +FLSA HPL  H R A++R+G+    VP+SVI  
Sbjct: 100 RDEIVGR---IKYIFSD---------EFLSAEHPLGAHLRAALRRDGERCGSVPVSVIAT 159

Query: 71  YDARICNLSKWIDPHMESNPYLVIPCILRAAAKLSESLSA-PKGQLSLQRKNPYPSEVIA 130
            DA+I +  K I+P +ES+P+L I  +++AAAKL++ + A P G   L+RKN YPSE++ 
Sbjct: 160 VDAKINSRCKIINPSVESDPFLAISYVMKAAAKLADYIVASPHG---LRRKNAYPSEIVE 219

Query: 131 SSVIEPSLSSKRSLIEVVHIPHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFIS 190
           +     S S     +  V+IP   ++ VE  TL +S   +YLD IA++LGL D  +V IS
Sbjct: 220 ALATHVSDSLHSREVAAVYIPCIDEEVVELDTLYISSNRHYLDSIAERLGLKDGNQVMIS 279

Query: 191 RPVGRAS--SETRLYFAASETFLSDLPSDL--LDFKEALHFREPLNARATYLCGQDIYGD 250
           R  G+AS  SE RLY    + +L D  SD      +++ H  +  NARA+Y+CGQDI+GD
Sbjct: 280 RMFGKASCGSECRLYSEIPKKYL-DNSSDASGTSNEDSSHIVKSRNARASYICGQDIHGD 339

Query: 251 AILANIGYTWKSKDLSYENIGLQSYYR 273
           AILA++GY WKS DL Y+++ + S+YR
Sbjct: 340 AILASVGYRWKSDDLDYDDVTVNSFYR 350

[Close]

BLAST of MELO3C002825 vs. TAIR10
Match: AT4G20920.1 (AT4G20920.1 double-stranded RNA-binding domain (DsRBD)-containing protein)

HSP 1 Score: 152.9 bits (385), Expect = 2.9e-37
Identity = 91/227 (40.09%), Postives = 136/227 (59.91%), Query Frame = 1


Query: 37  QFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESNPYLVIPC 96
           +FLS  HPL GH R A+QR+G+    +P+SVI  +DA+I +  K IDP +ES+P L++  
Sbjct: 105 EFLSVDHPLGGHLRAALQRDGERCGSLPVSVIATFDAKINSRCKVIDPSVESDPILLMSY 164

Query: 97  ILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHIPHFL--D 156
           +++AAAKL + +       SL+RK PYP   I +       S K    E VH+   +  +
Sbjct: 165 VMKAAAKLPDYIVVSPHVDSLRRKKPYPPATIKALATTHVKSIK---AEAVHLQCTVGGE 224

Query: 157 KPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASS--ETRLYFAASETFLSD 216
           + V+ +TLD+S   YYLD+IA +LGL D ++V ISR +G+ SS  E R+Y A  +   SD
Sbjct: 225 EVVKPVTLDISSGRYYLDIIADKLGLKDGSQVMISRTIGKTSSGYECRVYAAIPKLKSSD 284

Query: 217 ---LPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWK 257
                 +     E+ H  +  NA+A+++CG DI+GDAI+A++GY W+
Sbjct: 285 NSWKAREKRPIIESSHLEKSRNAKASFVCGVDIHGDAIVASVGYPWR 328

[Close]

BLAST of MELO3C002825 vs. NCBI nr
Match: gi|659068638|ref|XP_008445459.1| (PREDICTED: small RNA 2'-O-methyltransferase isoform X1 [Cucumis melo])

HSP 1 Score: 478.4 bits (1230), Expect = 8.6e-132
Identity = 237/246 (96.34%), Postives = 242/246 (98.37%), Query Frame = 1


Query: 30  LSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESN 89
           ++ L+  +FLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESN
Sbjct: 110 INYLFSNEFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESN 169

Query: 90  PYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHI 149
           PYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHI
Sbjct: 170 PYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHI 229

Query: 150 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETF 209
           PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETF
Sbjct: 230 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETF 289

Query: 210 LSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 269
           LSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS
Sbjct: 290 LSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 349

Query: 270 YYRSLL 276
           YYR L+
Sbjct: 350 YYRMLI 355

[Close]

BLAST of MELO3C002825 vs. NCBI nr
Match: gi|659068642|ref|XP_008445476.1| (PREDICTED: small RNA 2'-O-methyltransferase isoform X2 [Cucumis melo])

HSP 1 Score: 477.2 bits (1227), Expect = 1.9e-131
Identity = 237/243 (97.53%), Postives = 240/243 (98.77%), Query Frame = 1


Query: 33  LYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESNPYL 92
           L + +FLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESNPYL
Sbjct: 83  LAIEKFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESNPYL 142

Query: 93  VIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHIPHF 152
           VIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHIPHF
Sbjct: 143 VIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHIPHF 202

Query: 153 LDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETFLSD 212
           LDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETFLSD
Sbjct: 203 LDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETFLSD 262

Query: 213 LPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQSYYR 272
           LPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQSYYR
Sbjct: 263 LPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQSYYR 322

Query: 273 SLL 276
            L+
Sbjct: 323 MLI 325

[Close]

BLAST of MELO3C002825 vs. NCBI nr
Match: gi|449435894|ref|XP_004135729.1| (PREDICTED: small RNA 2'-O-methyltransferase isoform X1 [Cucumis sativus])

HSP 1 Score: 465.3 bits (1196), Expect = 7.5e-128
Identity = 231/246 (93.90%), Postives = 239/246 (97.15%), Query Frame = 1


Query: 30  LSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESN 89
           ++ L+  +FLSALHPLSGHFRDAMQREGD HCLVPISVIFAYDARICNLSKWIDPH+ESN
Sbjct: 110 INYLFSSEFLSALHPLSGHFRDAMQREGDSHCLVPISVIFAYDARICNLSKWIDPHVESN 169

Query: 90  PYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHI 149
           PYLVIPCILRAAAKLSESLSAP GQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVV I
Sbjct: 170 PYLVIPCILRAAAKLSESLSAPNGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVLI 229

Query: 150 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETF 209
           PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRP+GRASSETRLYFAASETF
Sbjct: 230 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPIGRASSETRLYFAASETF 289

Query: 210 LSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 269
           LSDLPSDLLDFK+ALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS
Sbjct: 290 LSDLPSDLLDFKKALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 349

Query: 270 YYRSLL 276
           YYR L+
Sbjct: 350 YYRMLI 355

[Close]

BLAST of MELO3C002825 vs. NCBI nr
Match: gi|700210816|gb|KGN65912.1| (hypothetical protein Csa_1G537600 [Cucumis sativus])

HSP 1 Score: 465.3 bits (1196), Expect = 7.5e-128
Identity = 231/246 (93.90%), Postives = 239/246 (97.15%), Query Frame = 1


Query: 30  LSTLYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESN 89
           ++ L+  +FLSALHPLSGHFRDAMQREGD HCLVPISVIFAYDARICNLSKWIDPH+ESN
Sbjct: 181 INYLFSSEFLSALHPLSGHFRDAMQREGDSHCLVPISVIFAYDARICNLSKWIDPHVESN 240

Query: 90  PYLVIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHI 149
           PYLVIPCILRAAAKLSESLSAP GQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVV I
Sbjct: 241 PYLVIPCILRAAAKLSESLSAPNGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVLI 300

Query: 150 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETF 209
           PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRP+GRASSETRLYFAASETF
Sbjct: 301 PHFLDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPIGRASSETRLYFAASETF 360

Query: 210 LSDLPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 269
           LSDLPSDLLDFK+ALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS
Sbjct: 361 LSDLPSDLLDFKKALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQS 420

Query: 270 YYRSLL 276
           YYR L+
Sbjct: 421 YYRMLI 426

[Close]

BLAST of MELO3C002825 vs. NCBI nr
Match: gi|778661932|ref|XP_011659054.1| (PREDICTED: small RNA 2'-O-methyltransferase isoform X2 [Cucumis sativus])

HSP 1 Score: 463.8 bits (1192), Expect = 2.2e-127
Identity = 231/243 (95.06%), Postives = 237/243 (97.53%), Query Frame = 1


Query: 33  LYLLQFLSALHPLSGHFRDAMQREGDCHCLVPISVIFAYDARICNLSKWIDPHMESNPYL 92
           L + +FLSALHPLSGHFRDAMQREGD HCLVPISVIFAYDARICNLSKWIDPH+ESNPYL
Sbjct: 83  LAIEKFLSALHPLSGHFRDAMQREGDSHCLVPISVIFAYDARICNLSKWIDPHVESNPYL 142

Query: 93  VIPCILRAAAKLSESLSAPKGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVHIPHF 152
           VIPCILRAAAKLSESLSAP GQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVV IPHF
Sbjct: 143 VIPCILRAAAKLSESLSAPNGQLSLQRKNPYPSEVIASSVIEPSLSSKRSLIEVVLIPHF 202

Query: 153 LDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPVGRASSETRLYFAASETFLSD 212
           LDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRP+GRASSETRLYFAASETFLSD
Sbjct: 203 LDKPVESITLDLSPTGYYLDLIAKQLGLCDAAKVFISRPIGRASSETRLYFAASETFLSD 262

Query: 213 LPSDLLDFKEALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQSYYR 272
           LPSDLLDFK+ALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQSYYR
Sbjct: 263 LPSDLLDFKKALHFREPLNARATYLCGQDIYGDAILANIGYTWKSKDLSYENIGLQSYYR 322

Query: 273 SLL 276
            L+
Sbjct: 323 MLI 325

The following BLAST results are available for this feature:

BLAST of MELO3C002825 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HEN1_ARATH	3.0e-44	41.95	Small RNA 2'-O-methyltransferase OS=Arabidopsis thaliana GN=HEN1 PE=1 SV=1	[more]

BLAST of MELO3C002825 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI6_CUCSA	5.2e-128	93.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537600 PE=4 SV=1	[more]
M5X724_PRUPE	1.6e-68	54.88	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000980mg PE=4 SV=1	[more]
B9GH09_POPTR	5.7e-66	51.63	Corymbosa 2 family protein OS=Populus trichocarpa GN=POPTR_0001s46980g PE=4 SV=2	[more]
F6HLY7_VITVI	1.6e-63	54.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g05070 PE=4 SV=...	[more]
A0A061GET0_THECC	3.2e-61	49.81	Double-stranded RNA binding protein-related / DsRBD protein-related, putative is...	[more]

BLAST of MELO3C002825 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20910.1	1.7e-45	41.95	double-stranded RNA binding protein-related / DsRBD protein-related	[more]
AT4G20920.1	2.9e-37	40.09	double-stranded RNA-binding domain (DsRBD)-containing protein	[more]

BLAST of MELO3C002825 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068638\|ref\|XP_008445459.1\|	8.6e-132	96.34	PREDICTED: small RNA 2'-O-methyltransferase isoform X1 [Cucumis melo]	[more]
gi\|659068642\|ref\|XP_008445476.1\|	1.9e-131	97.53	PREDICTED: small RNA 2'-O-methyltransferase isoform X2 [Cucumis melo]	[more]
gi\|449435894\|ref\|XP_004135729.1\|	7.5e-128	93.90	PREDICTED: small RNA 2'-O-methyltransferase isoform X1 [Cucumis sativus]	[more]
gi\|700210816\|gb\|KGN65912.1\|	7.5e-128	93.90	hypothetical protein Csa_1G537600 [Cucumis sativus]	[more]
gi\|778661932\|ref\|XP_011659054.1\|	2.2e-127	95.06	PREDICTED: small RNA 2'-O-methyltransferase isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026610	Hen1

Vocabulary: **Biological Process**
Term	Definition
GO:0001510	RNA methylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008171	O-methyltransferase activity
GO:0008173	RNA methyltransferase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008171	O-methyltransferase activity
molecular_function	GO:0008173	RNA methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002825T1	MELO3C002825T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026610	3'-RNA ribose 2'-O-methyltransferase, Hen1	PANTHER	PTHR21404	HEN1	coord: 30..275 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002825	Cucumber (Gy14) v1	cgymeB020
MELO3C002825	Cucumber (Gy14) v1	cgymeB296
MELO3C002825	Cucurbita maxima (Rimu)	cmameB192
MELO3C002825	Cucurbita maxima (Rimu)	cmameB364
MELO3C002825	Cucurbita maxima (Rimu)	cmameB593
MELO3C002825	Cucurbita moschata (Rifu)	cmomeB179
MELO3C002825	Cucurbita moschata (Rifu)	cmomeB356
MELO3C002825	Cucurbita moschata (Rifu)	cmomeB583
MELO3C002825	Wild cucumber (PI 183967)	cpimeB014
MELO3C002825	Wild cucumber (PI 183967)	cpimeB455
MELO3C002825	Cucumber (Chinese Long) v2	cumeB018
MELO3C002825	Watermelon (Charleston Gray)	mewcgB145
MELO3C002825	Watermelon (97103) v1	mewmB172
MELO3C002825	Cucurbita pepo (Zucchini)	cpemeB026
MELO3C002825	Cucurbita pepo (Zucchini)	cpemeB477
MELO3C002825	Bottle gourd (USVL1VR-Ls)	lsimeB128
MELO3C002825	Bottle gourd (USVL1VR-Ls)	lsimeB179
MELO3C002825	Cucumber (Gy14) v2	cgybmeB013
MELO3C002825	Cucumber (Gy14) v2	cgybmeB399
MELO3C002825	Silver-seed gourd	carmeB0400
MELO3C002825	Silver-seed gourd	carmeB0430
MELO3C002825	Cucumber (Chinese Long) v3	cucmeB013
MELO3C002825	Cucumber (Chinese Long) v3	cucmeB466
MELO3C002825	Watermelon (97103) v2	mewmbB147
MELO3C002825	Wax gourd	mewgoB158
MELO3C002825	Wax gourd	mewgoB164
MELO3C002825	Melon (DHL92) v3.5.1	memeB076