MELO3C002445.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C002445.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr12 : 23970509 .. 23971192 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTCTTGCCGGTATTGGAGGGGATGTGGAACCTTCTTTGGATGGCCAGCTGACAAGCCCGGTTCTGGAGGTGGTGGTGGTGGTGGAGGGAGCGGTGGTGGCGGAGGCAATTCAGGAGATTGGGGTTGGGTTTGGCCATGGTGAAGGTTATGGAGCTGGGTTTGGTGTAGGTGGTAATGGCGGAGGTGGAGGCGGCGGTGGCNNNNNNNNNNNNNNNNNNNNAGGCGGAGGAGCTGGAGGAGGAGGTGGCGGCGGCGGTAGTGGAGGAGGAGGAGCAAATGGAGGAAATGGCTATGGTAGTGGTTTTGGAGGTGGCATAGGTAGCGGAGGCAGCGGTGGTGGCGGGGGCGGAGGAGGAGGGGGTTCAAATGGAGGAAGTAGTAACGGTCATGGCAGTGGTTTTGGGGGCGGAGTAGGAAACGGTGCGGGTGGCGGTGGTGGGGGCAGCGGCGGAGGGGGTGGAATAAGTAATTCAAATGGAGGATATGGTAAAGGGGAGGGCAGTGGAATTGGTGGCAGTGGTAAGGGAGGAGAAGGAATGGGGATGGGATTTGGAATGGGTTTTGGTATGGGAATTGGATTTGGGATGGGAAACAACAACAACAATAACAATAACAATGGAGCTTATGATTACAAAAATGATGAAACTAAAGTTAAAACCAATGTTGCTCAACCCTAA

mRNA sequence

ATGAAGATTCTTGCCGGTATTGGAGGGGATGTGGAACCTTCTTTGGATGGCCAGCTGACAAGCCCGGTTCTGGAGGTGGTGGTGGTGGTGGAGGGAGCGGTGGTGGCGGAGGCAATTCAGGAGATTGGGGTTGGGTTTGGCCATGGTGAAGGTTATGGAGCTGGGTTTGGTGTAGGTGGTAATGGCGGAGGTGGAGGCGGCGGCGGAGGAGCTGGAGGAGGAGGTGGCGGCGGCGGTAGTGGAGGAGGAGGAGCAAATGGAGGAAATGGCTATGGTAGTGGTTTTGGAGGTGGCATAGGTAGCGGAGGCAGCGGTGGTGGCGGGGGCGGAGGAGGAGGGGGTTCAAATGGAGGAAGTAGTAACGGTCATGGCAGTGGTTTTGGGGGCGGAGTAGGAAACGGTGCGGGTGGCGGTGGTGGGGGCAGCGGCGGAGGGGGTGGAATAAGTAATTCAAATGGAGGATATGGTAAAGGGGAGGGCAGTGGAATTGGTGGCAGTGGTAAGGGAGGAGAAGGAATGGGGATGGGATTTGGAATGGGTTTTGGTATGGGAATTGGATTTGGGATGGGAAACAACAACAACAATAACAATAACAATGGAGCTTATGATTACAAAAATGATGAAACTAAAGTTAAAACCAATGTTGCTCAACCCTAA

Coding sequence (CDS)

ATGAAGATTCTTGCCGGTATTGGAGGGGATGTGGAACCTTCTTTGGATGGCCAGCTGACAAGCCCGGTTCTGGAGGTGGTGGTGGTGGTGGAGGGAGCGGTGGTGGCGGAGGCAATTCAGGAGATTGGGGTTGGGTTTGGCCATGGTGAAGGTTATGGAGCTGGGTTTGGTGTAGGTGGTAATGGCGGAGGTGGAGGCGGCGGCGGAGGAGCTGGAGGAGGAGGTGGCGGCGGCGGTAGTGGAGGAGGAGGAGCAAATGGAGGAAATGGCTATGGTAGTGGTTTTGGAGGTGGCATAGGTAGCGGAGGCAGCGGTGGTGGCGGGGGCGGAGGAGGAGGGGGTTCAAATGGAGGAAGTAGTAACGGTCATGGCAGTGGTTTTGGGGGCGGAGTAGGAAACGGTGCGGGTGGCGGTGGTGGGGGCAGCGGCGGAGGGGGTGGAATAAGTAATTCAAATGGAGGATATGGTAAAGGGGAGGGCAGTGGAATTGGTGGCAGTGGTAAGGGAGGAGAAGGAATGGGGATGGGATTTGGAATGGGTTTTGGTATGGGAATTGGATTTGGGATGGGAAACAACAACAACAATAACAATAACAATGGAGCTTATGATTACAAAAATGATGAAACTAAAGTTAAAACCAATGTTGCTCAACCCTAA

Protein sequence

MKILAGIGGDVEPSLDGQLTSPVLEVVVVVEGAVVAEAIQEIGVGFGHGEGYGAGFGVGGNGGGGGGGGGAGGGGGGGGSGGGGANGGNGYGSGFGGGIGSGGSGGGGGGGGGGSNGGSSNGHGSGFGGGVGNGAGGGGGGSGGGGGISNSNGGYGKGEGSGIGGSGKGGEGMGMGFGMGFGMGIGFGMGNNNNNNNNNGAYDYKNDETKVKTNVAQP
Homology
[Close]
BLAST of MELO3C002445.2 vs. NCBI nr
Match: XP_008446350.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MKILAGIGGDVEPSLDGQLTSPVLEVVVVVEGAV 35
          MKILAGIGGDVEPSLDGQLTSPVLEVVVVVEGAV
Sbjct: 1  MKILAGIGGDVEPSLDGQLTSPVLEVVVVVEGAV 34

[Close]
BLAST of MELO3C002445.2 vs. TrEMBL
Match: tr|A0A1S3BEV5|A0A1S3BEV5_CUCME (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103489116 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.8e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MKILAGIGGDVEPSLDGQLTSPVLEVVVVVEGAV 35
          MKILAGIGGDVEPSLDGQLTSPVLEVVVVVEGAV
Sbjct: 1  MKILAGIGGDVEPSLDGQLTSPVLEVVVVVEGAV 34

The following BLAST results are available for this feature:
BLAST of MELO3C002445.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446350.11.2e-07100.00PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo][more]
BLAST of MELO3C002445.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C002445.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C002445.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BEV5|A0A1S3BEV5_CUCME7.8e-08100.00putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002445.2.1MELO3C002445.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..218

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002445.2Cucumber (Gy14) v2cgybmedB020
MELO3C002445.2Cucumber (Gy14) v2cgybmedB397
MELO3C002445.2Cucumber (Gy14) v1cgymedB019
MELO3C002445.2Cucumber (Gy14) v1cgymedB094
MELO3C002445.2Cucurbita maxima (Rimu)cmamedB213
MELO3C002445.2Cucurbita maxima (Rimu)cmamedB413
MELO3C002445.2Cucurbita maxima (Rimu)cmamedB676
MELO3C002445.2Cucurbita maxima (Rimu)cmamedB883
MELO3C002445.2Cucurbita moschata (Rifu)cmomedB201
MELO3C002445.2Cucurbita moschata (Rifu)cmomedB408
MELO3C002445.2Cucurbita moschata (Rifu)cmomedB667
MELO3C002445.2Cucurbita moschata (Rifu)cmomedB875
MELO3C002445.2Cucurbita pepo (Zucchini)cpemedB031
MELO3C002445.2Cucurbita pepo (Zucchini)cpemedB063
MELO3C002445.2Cucurbita pepo (Zucchini)cpemedB517
MELO3C002445.2Cucurbita pepo (Zucchini)cpemedB559
MELO3C002445.2Cucumber (Chinese Long) v2cumedB022
MELO3C002445.2Wild cucumber (PI 183967)cpimedB023
MELO3C002445.2Wild cucumber (PI 183967)cpimedB447
MELO3C002445.2Cucumber (Chinese Long) v2cumedB439
MELO3C002445.2Melon (DHL92) v3.6.1medmedB074
MELO3C002445.2Bottle gourd (USVL1VR-Ls)lsimedB138
MELO3C002445.2Bottle gourd (USVL1VR-Ls)lsimedB189
MELO3C002445.2Watermelon (Charleston Gray)medwcgB131
MELO3C002445.2Watermelon (Charleston Gray)medwcgB144
MELO3C002445.2Watermelon (97103) v1medwmB145
MELO3C002445.2Watermelon (97103) v1medwmB164
MELO3C002445.2Silver-seed gourdcarmedB0504
MELO3C002445.2Silver-seed gourdcarmedB0649
MELO3C002445.2Silver-seed gourdcarmedB0921
MELO3C002445.2Silver-seed gourdcarmedB0987
MELO3C002445.2Cucumber (Chinese Long) v3cucmedB022
MELO3C002445.2Cucumber (Chinese Long) v3cucmedB032
MELO3C002445.2Cucumber (Chinese Long) v3cucmedB455
MELO3C002445.2Watermelon (97103) v2medwmbB130
MELO3C002445.2Watermelon (97103) v2medwmbB145
MELO3C002445.2Wax gourdmedwgoB159
MELO3C002445.2Wax gourdmedwgoB180