MELO3C001935 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C001935
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA polymerase epsilon subunit B family protein
Locationchr12 : 26194034 .. 26195557 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTACATGGAGTTTATAGGGCCATCAACAGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAAGTGCATGTTCCAAATGCCACTTTCTCAAGTAACCCTTGCAGGTGAATACTTCGATTGCTGACTTGTAGCCTTAATAATGGTGCTTCTAATCTTAATTATAGTATTCTGTTGCATGAGGGGCTTCACTTTTACAGCTTACTCGTGAAATAAATCATCTTTTTCTATTTGGAATAACCCAACAGAACTGTATTTAATAGATTTAAAGGCTAGTGTTAATGGTATGGATTTAGTTATCCAGTTTTTTTTTTTTTATTACTATTGAATTTAGAGGGAAAAAGGTCATTTATTAACAAGAGAGAACAAAGCTATGATGGACAAAATAATTGGTCTTCTAAAAGAGCGTTTGATTTTTTAATTAATTAAGAGGAATAAATCGATTTTAAGAGGACATTATGCTCCCTTTGGTGAATGCTATACCTTTTCCGTTTTTACTCCTTAGTGGTGGATAATTGTCATAATTGAATGCAGGGTCAGATTCTACACTCAGGAAATTGTATTTTTCCGACAGGACCTGCTTTATAGAATGCGCCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGTGATCCTTTTGAGCATGTGACTTTTTTTCTTTTCCTTTTATATTTCTGTTATTTTTTTTCTAGTTCTCTGTTTATGGATTCTAACCCTTTCGGATATTTATATACGGAGGCCTTAAGGTTTCATGATTCTCTTGCAGCTTGTTGCCACCATAACTCATCAAAGTCATCTCTGTCCTCTTCCTCTAGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATATCCTACTCCTCATGTGGTACTTACCCATCTCTCCATCTAGTGTTTTAACGATCTATTTATACATCCTAAGTTGGATGTCCTTTCTCTCCACACCTGGAGACAGAAAATGAATGAAGGTTCTGATGAATGATAAGTGTTCTACTGCGATAGAATCTCAATGTTGCATGAACTTTCAGATAATTATATCCATCTTTATTTGGTTTGTGCAGATAGTTTTGGGGGATAGAAGTAAGCAACAAGCGTTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTCGTGGCGTATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGTAAATTATTACAAAGTTTAGGCCAGATTCAAGGCGGGCACACTCCTTTATGTAGCATTACAATTCGTTTAGAACGTGAATGAGAAATCCTATAGCATCATTCTTTATCTTGGGAGTTGCACTGGTGGGTGCACACCAAGAATTACCACTGGCTAGAATTTAACTCTATGCAGAAGGGTTTTGTGATTTCAACATTGGTGCAGCGTTAGGAATCTCGTTAGATGTACAATTGTAAATCTGAGTAACATATTTGTTTTTAGATTATGCATTCTAATGGTGGATGGTGTATTGATCAACAAC

mRNA sequence

TGTTTACATGGAGTTTATAGGGCCATCAACAGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAAGTGCATGTTCCAAATGCCACTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACTCAGGAAATTGTATTTTTCCGACAGGACCTGCTTTATAGAATGCGCCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGTGATCCTTTTGAGCATCTTGTTGCCACCATAACTCATCAAAGTCATCTCTGTCCTCTTCCTCTAGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATATCCTACTCCTCATGTGATAGTTTTGGGGGATAGAAGTAAGCAACAAGCGTTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTCGTGGCGTATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGTAAATTATTACAAAGTTTAGGCCAGATTCAAGGCGGGCACACTCCTTTATGTAGCATTACAATTCGTTTAGAACGTGAATGAGAAATCCTATAGCATCATTCTTTATCTTGGGAGTTGCACTGGTGGGTGCACACCAAGAATTACCACTGGCTAGAATTTAACTCTATGCAGAAGGGTTTTGTGATTTCAACATTGGTGCAGCGTTAGGAATCTCGTTAGATGTACAATTGTAAATCTGAGTAACATATTTGTTTTTAGATTATGCATTCTAATGGTGGATGGTGTATTGATCAACAAC

Coding sequence (CDS)

ATGGAGTTTATAGGGCCATCAACAGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAAGTGCATGTTCCAAATGCCACTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACTCAGGAAATTGTATTTTTCCGACAGGACCTGCTTTATAGAATGCGCCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGTGATCCTTTTGAGCATCTTGTTGCCACCATAACTCATCAAAGTCATCTCTGTCCTCTTCCTCTAGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATATCCTACTCCTCATGTGATAGTTTTGGGGGATAGAAGTAAGCAACAAGCGTTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTCGTGGCGTATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGTAA

Protein sequence

MEFIGPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL*
Homology
[Close]
BLAST of MELO3C001935 vs. Swiss-Prot
Match: DPB2_ARATH (DNA polymerase epsilon subunit B OS=Arabidopsis thaliana GN=DPB2 PE=1 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.3e-72
Identity = 126/158 (79.75%), Postives = 138/158 (87.34%), Query Frame = 1 

Query: 2   EFIGPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSC 61
           E  GPSTVLPRCALPKYLTEEL+  +PNA FSSNPCRV+FY QEIVFFRQDLLYRMRRSC
Sbjct: 369 EDAGPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSC 428

Query: 62  LIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSK 121
           L+ PS+EET+DPF+HLV TITHQSHLCPLPL++QPIIWNYDH L LYPTPH IVLGD+S+
Sbjct: 429 LVTPSSEETNDPFKHLVYTITHQSHLCPLPLMVQPIIWNYDHALRLYPTPHTIVLGDKSE 488

Query: 122 QQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           Q+  K+ G TCFNPGSF+ DSTFVAYRP  QEVELSAL
Sbjct: 489 QEVCKFGGTTCFNPGSFSTDSTFVAYRPSTQEVELSAL 526

[Close]
BLAST of MELO3C001935 vs. Swiss-Prot
Match: DPOE2_CHICK (DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 66/156 (42.31%), Postives = 93/156 (59.62%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GP +VLPR  L + +T+E +  VP + F++NPCRV++ TQEI+ FR+DL+ +M R+C+  
Sbjct: 371 GPGSVLPRPPLAENITQEFRQLVPFSVFTTNPCRVQYCTQEIIIFREDLVNKMCRNCVRF 430

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PS+  + D   H V TI  Q HL PLPL + P+ W YD+ L +YP P ++V+ D+     
Sbjct: 431 PSS--SMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPVPDMLVIADKYDPFT 490

Query: 125 FKYTGITCFNPGSFTNDS-TFVAYRPCNQEVELSAL 160
              T   C NPGSF     +F  + P N+ VE S L
Sbjct: 491 VTNTDCLCINPGSFPRSGFSFKVFYPSNKTVEDSKL 524

[Close]
BLAST of MELO3C001935 vs. Swiss-Prot
Match: DPOE2_DICDI (DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum GN=pole2 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-28
Identity = 58/146 (39.73%), Postives = 89/146 (60.96%), Query Frame = 1 

Query: 9   VLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTE 68
           +LP+  +     ++    +P +TF++NPCR+R+ +QEI+ FR DL  +MRR C++ PS  
Sbjct: 362 ILPKFPISNVFIKDFISLIPKSTFTTNPCRIRYCSQEIIIFRDDLTNKMRRHCILEPS-- 421

Query: 69  ETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQ-QAFKY 128
           ++ D  +HL+  I   SHLC L L  +PI WNYDH + +YP P ++V+GD+S Q +  + 
Sbjct: 422 QSCDISQHLIELICSNSHLCNLTLEDKPIYWNYDHAMSVYPLPDLLVIGDKSNQYEHSRA 481

Query: 129 TGITCFNPGSFTNDSTFVAYRPCNQE 154
            G    NP SF+ D +F  Y P N++
Sbjct: 482 DGTYSMNPSSFSTDYSFAHYIPANKQ 505

[Close]
BLAST of MELO3C001935 vs. Swiss-Prot
Match: DPB2_CRYNB (DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DPB2 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-27
Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 7   STVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPS 66
           ST LPR +LP   T  L   +PNA F SNPCR++++  EIV  R+DL+ +M R+ ++   
Sbjct: 380 STTLPRPSLPSAFTTRLSNRIPNARFVSNPCRLKYFGMEIVICREDLMGKMMRNLVVVKE 439

Query: 67  TEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFK 126
            EE +    +LV TI  Q+HL PLP+ ++P +W YDH L LYP P  +VL D+ ++    
Sbjct: 440 GEEMNMK-RYLVQTILDQAHLSPLPISVRPTLWEYDHALRLYPMPSAVVLADKYERYELT 499

Query: 127 YTGITCFNPGSF 139
           Y G   FNPG F
Sbjct: 500 YEGCHVFNPGKF 510

[Close]
BLAST of MELO3C001935 vs. Swiss-Prot
Match: DPB2_CRYNJ (DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPB2 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-27
Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 7   STVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPS 66
           ST LPR +LP   T  L   +PNA F SNPCR++++  EIV  R+DL+ +M R+ ++   
Sbjct: 380 STTLPRPSLPSAFTTRLSNRIPNARFVSNPCRLKYFGMEIVICREDLMGKMMRNLVVVKE 439

Query: 67  TEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFK 126
            EE +    +LV TI  Q+HL PLP+ ++P +W YDH L LYP P  +VL D+ ++    
Sbjct: 440 GEEMNMK-RYLVQTILDQAHLSPLPISVRPTLWEYDHALRLYPMPSAVVLADKYERYELT 499

Query: 127 YTGITCFNPGSF 139
           Y G   FNPG F
Sbjct: 500 YEGCHVFNPGKF 510

[Close]
BLAST of MELO3C001935 vs. TrEMBL
Match: A0A0A0LX08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G435200 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-85
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GPSTVLPRCALPKYLTEELQ+HV NA FSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP
Sbjct: 146 GPSTVLPRCALPKYLTEELQMHVSNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 205

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA
Sbjct: 206 PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 265

Query: 125 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL
Sbjct: 266 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 300

[Close]
BLAST of MELO3C001935 vs. TrEMBL
Match: A0A0D2UDT8_GOSRA (DNA polymerase epsilon subunit 2 OS=Gossypium raimondii GN=B456_009G004100 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 7.9e-81
Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GPSTVLPRCALPKYLTEELQ HVPNA FSSNPCRV+FYTQE+VFFRQDLLYRMRRSCLIP
Sbjct: 376 GPSTVLPRCALPKYLTEELQKHVPNAIFSSNPCRVKFYTQEMVFFRQDLLYRMRRSCLIP 435

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PSTEET DPFEHLVATITHQSHLCPLPL +QPIIWNYDHCLHLYPTPH IVLGDRS+Q+A
Sbjct: 436 PSTEETDDPFEHLVATITHQSHLCPLPLFVQPIIWNYDHCLHLYPTPHTIVLGDRSEQKA 495

Query: 125 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           FKYTGITCFNPGSF++DSTFVAYRPC QEVE SAL
Sbjct: 496 FKYTGITCFNPGSFSDDSTFVAYRPCTQEVEFSAL 530

[Close]
BLAST of MELO3C001935 vs. TrEMBL
Match: B9I4W5_POPTR (DNA polymerase epsilon subunit 2 OS=Populus trichocarpa GN=POPTR_0012s03640g PE=3 SV=2)

HSP 1 Score: 306.2 bits (783), Expect = 2.3e-80
Identity = 139/158 (87.97%), Postives = 149/158 (94.30%), Query Frame = 1 

Query: 2   EFIGPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSC 61
           E  GPSTVLPRC LPKYLTEELQ H+PNA F+SNPCRV+FYTQEIVFFR DLLYRMRRSC
Sbjct: 361 EDAGPSTVLPRCPLPKYLTEELQKHIPNAIFASNPCRVKFYTQEIVFFRHDLLYRMRRSC 420

Query: 62  LIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSK 121
           L+PPSTEET DPFEHLVATITHQSHLCPLPL++QPIIWNYDHCLHLYP+PH IVLGDRS+
Sbjct: 421 LMPPSTEETDDPFEHLVATITHQSHLCPLPLIVQPIIWNYDHCLHLYPSPHTIVLGDRSE 480

Query: 122 QQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           Q+AFKYTGITCFNPGSF+NDSTFVAYRPC QEVELSAL
Sbjct: 481 QKAFKYTGITCFNPGSFSNDSTFVAYRPCTQEVELSAL 518

[Close]
BLAST of MELO3C001935 vs. TrEMBL
Match: A0A0B0PPT4_GOSAR (DNA polymerase epsilon subunit 2 OS=Gossypium arboreum GN=F383_02352 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.3e-80
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GPSTVLPRCALPKYLTEELQ HVPNA FSSNPCRV+FYTQE+VFFRQDLLYRMRRSCLIP
Sbjct: 348 GPSTVLPRCALPKYLTEELQKHVPNAIFSSNPCRVKFYTQEMVFFRQDLLYRMRRSCLIP 407

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PSTEET DPFEHLVATITHQSHLCPLPL +QPIIWNYDHCLHLYPTPH IVLGDRS+Q+A
Sbjct: 408 PSTEETDDPFEHLVATITHQSHLCPLPLFVQPIIWNYDHCLHLYPTPHTIVLGDRSEQKA 467

Query: 125 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           FKYTGITCFNPGSF++DSTFVA+RPC QEVE SAL
Sbjct: 468 FKYTGITCFNPGSFSDDSTFVAFRPCTQEVEFSAL 502

[Close]
BLAST of MELO3C001935 vs. TrEMBL
Match: A0A103YEY7_CYNCS (DNA polymerase alpha/epsilon, subunit B OS=Cynara cardunculus var. scolymus GN=Ccrd_013806 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.7e-80
Identity = 138/157 (87.90%), Postives = 148/157 (94.27%), Query Frame = 1 

Query: 3   FIGPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCL 62
           F  PSTVLPRCALPKY+TEELQ H+PNA F+SNPCR++FYTQEIVFFRQDLLYRMRRSCL
Sbjct: 307 FSSPSTVLPRCALPKYITEELQKHIPNAIFASNPCRIKFYTQEIVFFRQDLLYRMRRSCL 366

Query: 63  IPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQ 122
           IPPSTEETSDPFEHLVATITHQSHLCPLPL +QPIIWNYDHCLHLYPTPH IVLGD S+Q
Sbjct: 367 IPPSTEETSDPFEHLVATITHQSHLCPLPLSVQPIIWNYDHCLHLYPTPHTIVLGDNSEQ 426

Query: 123 QAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           +AFKYT ITCFNPGSF+NDSTFV YRPCN+EVELSAL
Sbjct: 427 KAFKYTDITCFNPGSFSNDSTFVVYRPCNREVELSAL 463

[Close]
BLAST of MELO3C001935 vs. TAIR10
Match: AT5G22110.1 (AT5G22110.1 DNA polymerase epsilon subunit B2)

HSP 1 Score: 272.3 bits (695), Expect = 1.9e-73
Identity = 126/158 (79.75%), Postives = 138/158 (87.34%), Query Frame = 1 

Query: 2   EFIGPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSC 61
           E  GPSTVLPRCALPKYLTEEL+  +PNA FSSNPCRV+FY QEIVFFRQDLLYRMRRSC
Sbjct: 369 EDAGPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSC 428

Query: 62  LIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSK 121
           L+ PS+EET+DPF+HLV TITHQSHLCPLPL++QPIIWNYDH L LYPTPH IVLGD+S+
Sbjct: 429 LVTPSSEETNDPFKHLVYTITHQSHLCPLPLMVQPIIWNYDHALRLYPTPHTIVLGDKSE 488

Query: 122 QQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           Q+  K+ G TCFNPGSF+ DSTFVAYRP  QEVELSAL
Sbjct: 489 QEVCKFGGTTCFNPGSFSTDSTFVAYRPSTQEVELSAL 526

[Close]
BLAST of MELO3C001935 vs. NCBI nr
Match: gi|659066275|ref|XP_008463560.1| (PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2 [Cucumis melo])

HSP 1 Score: 330.5 bits (846), Expect = 1.6e-87
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP
Sbjct: 375 GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 434

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA
Sbjct: 435 PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 494

Query: 125 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL
Sbjct: 495 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 529

[Close]
BLAST of MELO3C001935 vs. NCBI nr
Match: gi|778660923|ref|XP_011657177.1| (PREDICTED: DNA polymerase epsilon subunit 2 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GPSTVLPRCALPKYLTEELQ+HV NA FSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP
Sbjct: 374 GPSTVLPRCALPKYLTEELQMHVSNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 433

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA
Sbjct: 434 PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 493

Query: 125 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL
Sbjct: 494 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 528

[Close]
BLAST of MELO3C001935 vs. NCBI nr
Match: gi|700210428|gb|KGN65524.1| (hypothetical protein Csa_1G435200 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GPSTVLPRCALPKYLTEELQ+HV NA FSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP
Sbjct: 146 GPSTVLPRCALPKYLTEELQMHVSNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 205

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA
Sbjct: 206 PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 265

Query: 125 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL
Sbjct: 266 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 300

[Close]
BLAST of MELO3C001935 vs. NCBI nr
Match: gi|763786774|gb|KJB53770.1| (hypothetical protein B456_009G004100 [Gossypium raimondii])

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-80
Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GPSTVLPRCALPKYLTEELQ HVPNA FSSNPCRV+FYTQE+VFFRQDLLYRMRRSCLIP
Sbjct: 376 GPSTVLPRCALPKYLTEELQKHVPNAIFSSNPCRVKFYTQEMVFFRQDLLYRMRRSCLIP 435

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PSTEET DPFEHLVATITHQSHLCPLPL +QPIIWNYDHCLHLYPTPH IVLGDRS+Q+A
Sbjct: 436 PSTEETDDPFEHLVATITHQSHLCPLPLFVQPIIWNYDHCLHLYPTPHTIVLGDRSEQKA 495

Query: 125 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           FKYTGITCFNPGSF++DSTFVAYRPC QEVE SAL
Sbjct: 496 FKYTGITCFNPGSFSDDSTFVAYRPCTQEVEFSAL 530

[Close]
BLAST of MELO3C001935 vs. NCBI nr
Match: gi|823219200|ref|XP_012442333.1| (PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Gossypium raimondii])

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-80
Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 5   GPSTVLPRCALPKYLTEELQVHVPNATFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIP 64
           GPSTVLPRCALPKYLTEELQ HVPNA FSSNPCRV+FYTQE+VFFRQDLLYRMRRSCLIP
Sbjct: 281 GPSTVLPRCALPKYLTEELQKHVPNAIFSSNPCRVKFYTQEMVFFRQDLLYRMRRSCLIP 340

Query: 65  PSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQA 124
           PSTEET DPFEHLVATITHQSHLCPLPL +QPIIWNYDHCLHLYPTPH IVLGDRS+Q+A
Sbjct: 341 PSTEETDDPFEHLVATITHQSHLCPLPLFVQPIIWNYDHCLHLYPTPHTIVLGDRSEQKA 400

Query: 125 FKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 160
           FKYTGITCFNPGSF++DSTFVAYRPC QEVE SAL
Sbjct: 401 FKYTGITCFNPGSFSDDSTFVAYRPCTQEVEFSAL 435

The following BLAST results are available for this feature:
BLAST of MELO3C001935 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DPB2_ARATH3.3e-7279.75DNA polymerase epsilon subunit B OS=Arabidopsis thaliana GN=DPB2 PE=1 SV=1[more]
DPOE2_CHICK2.0e-2942.31DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2 SV=1[more]
DPOE2_DICDI2.9e-2839.73DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum GN=pole2 PE=3 SV=1[more]
DPB2_CRYNB4.3e-2743.94DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans sero... [more]
DPB2_CRYNJ4.3e-2743.94DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans sero... [more]
BLAST of MELO3C001935 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX08_CUCSA1.1e-8598.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G435200 PE=4 SV=1[more]
A0A0D2UDT8_GOSRA7.9e-8190.97DNA polymerase epsilon subunit 2 OS=Gossypium raimondii GN=B456_009G004100 PE=3 ... [more]
B9I4W5_POPTR2.3e-8087.97DNA polymerase epsilon subunit 2 OS=Populus trichocarpa GN=POPTR_0012s03640g PE=... [more]
A0A0B0PPT4_GOSAR2.3e-8090.32DNA polymerase epsilon subunit 2 OS=Gossypium arboreum GN=F383_02352 PE=4 SV=1[more]
A0A103YEY7_CYNCS6.7e-8087.90DNA polymerase alpha/epsilon, subunit B OS=Cynara cardunculus var. scolymus GN=C... [more]
BLAST of MELO3C001935 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22110.11.9e-7379.75 DNA polymerase epsilon subunit B2[more]
BLAST of MELO3C001935 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659066275|ref|XP_008463560.1|1.6e-87100.00PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2 [Cucumis melo][more]
gi|778660923|ref|XP_011657177.1|1.5e-8598.06PREDICTED: DNA polymerase epsilon subunit 2 [Cucumis sativus][more]
gi|700210428|gb|KGN65524.1|1.5e-8598.06hypothetical protein Csa_1G435200 [Cucumis sativus][more]
gi|763786774|gb|KJB53770.1|1.1e-8090.97hypothetical protein B456_009G004100 [Gossypium raimondii][more]
gi|823219200|ref|XP_012442333.1|1.1e-8090.97PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007185DNA_pol_alpha/epsilon_bsu
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0042276 error-prone translesion synthesis
biological_process GO:0006260 DNA replication
cellular_component GO:0008622 epsilon DNA polymerase complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C001935T1MELO3C001935T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007185DNA polymerase alpha/epsilon, subunit BPFAMPF04042DNA_pol_E_Bcoord: 7..125
score: 9.4
NoneNo IPR availablePANTHERPTHR12708DNA POLYMERASE EPSILON SUBUNIT Bcoord: 4..159
score: 9.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C001935Cucurbita pepo (Zucchini)cpemeB491
MELO3C001935Bottle gourd (USVL1VR-Ls)lsimeB179
MELO3C001935Silver-seed gourdcarmeB0523
MELO3C001935Watermelon (97103) v2mewmbB159
MELO3C001935Wax gourdmewgoB176
MELO3C001935Cucumber (Gy14) v1cgymeB156
MELO3C001935Cucurbita maxima (Rimu)cmameB392
MELO3C001935Cucurbita moschata (Rifu)cmomeB383
MELO3C001935Watermelon (Charleston Gray)mewcgB154
MELO3C001935Watermelon (97103) v1mewmB174