MELO3C000665.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C000665.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr06 : 12156378 .. 12157354 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATACTTACGCGTCTGAGGCAGTTGCCCATTTGATTCCTAATGAAGACTCGTGGGAGGATGTATCTCAATGGTCGAAACATTTTCAACTAGAGTTAGGGGTGGATTGGCCATAGAAATTAGAAGTTCCACTTCCAAAGACTTGTCAATTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAATTTTATAGGAAAACCTAACGTCGGAGCATAGAGCAGAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATATATCGACATTGCGAGCTTTGTCACATTTCTAGGACCTTATGTTGAAGTGTTTCACGTTCAACACGTGATTTAACTTATACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATTTATGATCGAAAGTTGACTCTATAACGGTCGCTATCAAAGTTTATGGGTGACATTCATGCATCTGAGATAAAGAAACATATAAAGACAAAAGAAGGTAGGAATTGTATTCCCATCAATTATCTTATCAAACTTGCGCGTGGTTGTTTATCAAGGAAGAATGGTTTATCTCTCGTTGCATTATGTATTTACGGAACAGTTATTTTTCCCAAAATTAATGGGTATTTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTATTATCCCAATCATGGCAAAGACCTTTAGATCGCTAAATCATTGTCGTATCCAAGGCAAAGGAAAATTCTTTACCTGTGCTCTTATGCTCTTCATTTGGATTTTCAGTCATCTAAGGTATCCTAATAATTTTGGATATCCTTCGATAAAATTTAGCAGTCCGTAGAATAATACAAGAAACACTATCAGAGAATTCAATAGTGCACACTAGGATCCAAAAGATCCAGAATTTGGAGTTTGAATGCAGTTTTTCAGCCATTTAACGACAGTAAAAGCAATTT

mRNA sequence

ATGGTAGATACTTACGCGTCTGAGGCAGTTGCCCATTTGATTCCTAATGAAGACTCGTGGGAGGATGTATCTCAATGGTCGAAACATTTTCAACTAGAGTTAGGGGTGGATTGGCCATAGAAATTAGAAGTTCCACTTCCAAAGACTTGTCAATTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAATTTTATAGGAAAACCTAACGTCGGAGCATAGAGCAGAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATATATCGACATTGCGAGCTTTGTCACATTTCTAGGACCTTATGTTGAAGTGTTTCACGTTCAACACGTGATTTAACTTATACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATTTATGATCGAAAGTTGACTCTATAACGGTCGCTATCAAAGTTTATGGGTGACATTCATGCATCTGAGATAAAGAAACATATAAAGACAAAAGAAGGTAGGAATTGTATTCCCATCAATTATCTTATCAAACTTGCGCGTGGTTGTTTATCAAGGAAGAATGGTTTATCTCTCGTTGCATTATGTATTTACGGAACAGTTATTTTTCCCAAAATTAATGGGTATTTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTATTATCCCAATCATGGCAAAGACCTTTAGATCGCTAAATCATTGTCGTATCCAAGGCAAAGGAAAATTCTTTACCTGTGCTCTTATGCTCTTCATTTGGATTTTCAGTCATCTAAGGTATCCTAATAATTTTGGATATCCTTCGATAAAATTTAGCAGTCCGTAGAATAATACAAGAAACACTATCAGAGAATTCAATAGTGCACACTAGGATCCAAAAGATCCAGAATTTGGAGTTTGAATGCAGTTTTTCAGCCATTTAACGACAGTAAAAGCAATTT

Coding sequence (CDS)

ATGGGTGACATTCATGCATCTGAGATAAAGAAACATATAAAGACAAAAGAAGGTAGGAATTGTATTCCCATCAATTATCTTATCAAACTTGCGCGTGGTTGTTTATCAAGGAAGAATGGTTTATCTCTCGTTGCATTATGTATTTACGGAACAGTTATTTTTCCCAAAATTAATGGGTATTTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTATTATCCCAATCATGGCAAAGACCTTTAGATCGCTAAATCATTGTCGTATCCAAGGCAAAGGAAAATTCTTTACCTGTGCTCTTATGCTCTTCATTTGGATTTTCAGTCATCTAAGGTATCCTAATAATTTTGGATATCCTTCGATAAAATTTAGCAGTCCGTAG

Protein sequence

MGDIHASEIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVKIFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSHLRYPNNFGYPSIKFSSP

Homology

[Close]

BLAST of MELO3C000665.2 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 146.4 bits (368), Expect = 7.1e-32
Identity = 64/130 (49.23%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MGDIHASEIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGY 60
           +G I A EI+KH+K K    C+PI Y++ L +  ++ +  LSL+ALC++  V+FPK++GY
Sbjct: 41  VGKISAGEIEKHVKRKGENTCLPIEYILSLQQRFVNEERELSLLALCLFNLVLFPKVSGY 100

Query: 61  FEEEVVKIFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSHLRYPN 120
            EE +VK+FV +E  VN +IPI+A+TFR+LN CR +G GKF  CA +L+IWI SH+  P 
Sbjct: 101 VEERLVKLFVKVEMRVNLVIPILAETFRALNFCRSRGVGKFIGCAQLLYIWILSHINCPP 160

Query: 121 NFGYPSIKFS 131
            F  P +KFS
Sbjct: 161 EFKCPQVKFS 170

[Close]

BLAST of MELO3C000665.2 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 7.8e-31
Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1   MGDIHASEIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGY 60
           +G I A EI+KH+K K    C+PI Y+  L    ++ +  LSL+ALC++  V+FP ++ Y
Sbjct: 149 VGKISAXEIEKHVKRKGENTCLPIEYIXSLQXRFVNEERELSLLALCLFNLVLFPXVSXY 208

Query: 61  FEEEVVKIFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSHLRYPN 120
            EE VVK+FV +E GVN +IPI+A+TFR+LN CR +G GKF  CA +L+IWI SH+  P 
Sbjct: 209 VEEXVVKLFVKVEMGVNLVIPILAETFRALNFCRSRGVGKFIGCAQLLYIWILSHINCPP 268

Query: 121 NFGYPSIKFS 131
            F  P +KFS
Sbjct: 269 EFKCPQVKFS 278

[Close]

BLAST of MELO3C000665.2 vs. NCBI nr
Match: EOY18916.1 (Uncharacterized protein TCM_043420 [Theobroma cacao])

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 8   EIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVK 67
           E+ +H+K K    C+P ++L    +  +  + GL   A+ IYG V+FPK+ G+ E  V+ 
Sbjct: 5   EVDQHLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGHVEVSVID 64

Query: 68  IFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSH 116
            F  + R +NP+  I+AKTFRSLN CR +G+G+F  CA +L IWI SH
Sbjct: 65  FFDKVTRSINPVPSILAKTFRSLNFCRRKGEGRFIGCAQLLIIWIKSH 112

[Close]

BLAST of MELO3C000665.2 vs. NCBI nr
Match: EOY03884.1 (Uncharacterized protein TCM_019098 [Theobroma cacao])

HSP 1 Score: 100.5 bits (249), Expect = 4.4e-18
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 8   EIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVK 67
           E+ +H+K K    C+P ++L    +  +  + GL   A+ IYG V+FPK+ GY E  V+ 
Sbjct: 101 EVDQHLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGYVEVSVID 160

Query: 68  IFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSH 116
            F  + R +NP   I+A+TFRSLN CR +G+G+F  CA +L IWI SH
Sbjct: 161 FFDQVTRNINPAPSILAETFRSLNFCRRKGEGRFIGCAQLLTIWIKSH 208

[Close]

BLAST of MELO3C000665.2 vs. NCBI nr
Match: EOY04059.1 (Uncharacterized protein TCM_019321 [Theobroma cacao])

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 8   EIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVK 67
           E+ +H+K K    C+P ++L    +  +  ++GL   A+ IYG V+FPK+ G+ E  V+ 
Sbjct: 67  EVDQHLKKKGDTECLPWSFLNGYIKKHMEDEHGLLAFAMAIYGLVVFPKVLGHVEVSVID 126

Query: 68  IFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSH 116
            F  + R +NP   I+A+TFRSLN CR +G+G+F  CA +L IWI SH
Sbjct: 127 FFDQVTRSINPAPSILAETFRSLNFCRRKGEGRFIGCAQLLTIWIKSH 174

[Close]

BLAST of MELO3C000665.2 vs. TrEMBL
Match: tr|A0A061FPA7|A0A061FPA7_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_043420 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.7e-19
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 8   EIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVK 67
           E+ +H+K K    C+P ++L    +  +  + GL   A+ IYG V+FPK+ G+ E  V+ 
Sbjct: 5   EVDQHLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGHVEVSVID 64

Query: 68  IFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSH 116
            F  + R +NP+  I+AKTFRSLN CR +G+G+F  CA +L IWI SH
Sbjct: 65  FFDKVTRSINPVPSILAKTFRSLNFCRRKGEGRFIGCAQLLIIWIKSH 112

[Close]

BLAST of MELO3C000665.2 vs. TrEMBL
Match: tr|A0A061ENI4|A0A061ENI4_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019098 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.9e-18
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 8   EIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVK 67
           E+ +H+K K    C+P ++L    +  +  + GL   A+ IYG V+FPK+ GY E  V+ 
Sbjct: 101 EVDQHLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGYVEVSVID 160

Query: 68  IFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSH 116
            F  + R +NP   I+A+TFRSLN CR +G+G+F  CA +L IWI SH
Sbjct: 161 FFDQVTRNINPAPSILAETFRSLNFCRRKGEGRFIGCAQLLTIWIKSH 208

[Close]

BLAST of MELO3C000665.2 vs. TrEMBL
Match: tr|A0A061ENZ4|A0A061ENZ4_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019321 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 8   EIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVK 67
           E+ +H+K K    C+P ++L    +  +  ++GL   A+ IYG V+FPK+ G+ E  V+ 
Sbjct: 67  EVDQHLKKKGDTECLPWSFLNGYIKKHMEDEHGLLAFAMAIYGLVVFPKVLGHVEVSVID 126

Query: 68  IFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSH 116
            F  + R +NP   I+A+TFRSLN CR +G+G+F  CA +L IWI SH
Sbjct: 127 FFDQVTRSINPAPSILAETFRSLNFCRRKGEGRFIGCAQLLTIWIKSH 174

[Close]

BLAST of MELO3C000665.2 vs. TrEMBL
Match: tr|A0A061FA16|A0A061FA16_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032599 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 8   EIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVK 67
           E+ +H+K K    C+P ++L    +  +  + GL   A+ IYG V+FPK+ G+ E  ++ 
Sbjct: 101 EVDQHLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGHVEVSIID 160

Query: 68  IFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSH 116
            F  + R +NP   I+A+TFRSLN CR +G+G+F  CA +L IWI SH
Sbjct: 161 FFDQVTRSINPAPSILAETFRSLNFCRRKGEGRFIGCAQLLTIWIKSH 208

[Close]

BLAST of MELO3C000665.2 vs. TrEMBL
Match: tr|A0A061GRL6|A0A061GRL6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039702 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-17
Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 8   EIKKHIKTKEGRNCIPINYLIKLARGCLSRKNGLSLVALCIYGTVIFPKINGYFEEEVVK 67
           E+ +H+K K    C+P ++L    +  +  + GL   A+ IYG V+FPK+ G+ E  V+ 
Sbjct: 157 EVDQHLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGHVEVSVID 216

Query: 68  IFVGIERGVNPIIPIMAKTFRSLNHCRIQGKGKFFTCALMLFIWIFSH 116
            F  + R +NP   I+ +TFRSLN CR +G+G+F  CA +L IWI SH
Sbjct: 217 FFDQVTRSINPAPSILVETFRSLNFCRRKGEGRFIGCAQLLTIWIKSH 264

The following BLAST results are available for this feature:

BLAST of MELO3C000665.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150759.1	7.1e-32	49.23	uncharacterized protein LOC111018820 [Momordica charantia]	[more]
XP_022147190.1	7.8e-31	49.23	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
EOY18916.1	1.2e-18	42.59	Uncharacterized protein TCM_043420 [Theobroma cacao]	[more]
EOY03884.1	4.4e-18	42.59	Uncharacterized protein TCM_019098 [Theobroma cacao]	[more]
EOY04059.1	1.3e-17	41.67	Uncharacterized protein TCM_019321 [Theobroma cacao]	[more]

BLAST of MELO3C000665.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C000665.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C000665.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061FPA7\|A0A061FPA7_THECC	7.7e-19	42.59	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_043420 PE=4 SV=1	[more]
tr\|A0A061ENI4\|A0A061ENI4_THECC	2.9e-18	42.59	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019098 PE=4 SV=1	[more]
tr\|A0A061ENZ4\|A0A061ENZ4_THECC	8.5e-18	41.67	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019321 PE=4 SV=1	[more]
tr\|A0A061FA16\|A0A061FA16_THECC	1.5e-17	40.74	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032599 PE=4 SV=1	[more]
tr\|A0A061GRL6\|A0A061GRL6_THECC	3.2e-17	40.74	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039702 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000665.2.1	MELO3C000665.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C000665.2	Silver-seed gourd	carmedB0661
MELO3C000665.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C000665.2	Cucumber (Chinese Long) v3	cucmedB566
MELO3C000665.2	Watermelon (97103) v2	medwmbB421
MELO3C000665.2	Watermelon (97103) v2	medwmbB424
MELO3C000665.2	Wax gourd	medwgoB531
MELO3C000665.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C000665.2	Cucumber (Gy14) v2	cgybmedB492
MELO3C000665.2	Cucumber (Gy14) v1	cgymedB379
MELO3C000665.2	Cucumber (Gy14) v1	cgymedB412
MELO3C000665.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C000665.2	Cucurbita maxima (Rimu)	cmamedB560
MELO3C000665.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C000665.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C000665.2	Cucurbita moschata (Rifu)	cmomedB547
MELO3C000665.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C000665.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C000665.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C000665.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C000665.2	Wild cucumber (PI 183967)	cpimedB552
MELO3C000665.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C000665.2	Cucumber (Chinese Long) v2	cumedB534
MELO3C000665.2	Bottle gourd (USVL1VR-Ls)	lsimedB280
MELO3C000665.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C000665.2	Watermelon (Charleston Gray)	medwcgB413
MELO3C000665.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C000665.2	Watermelon (97103) v1	medwmB448
MELO3C000665.2	Watermelon (97103) v1	medwmB472
MELO3C000665.2	Silver-seed gourd	carmedB0220
MELO3C000665.2	Silver-seed gourd	carmedB0384