LsiUNG001020 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	LsiUNG001020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	F-box protein
Location	chr00 : 2745744 .. 2747111 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGTAAAATCCAATATGTAAATCATTAATTTAGAATTTCAATAATTTCGGAGTGCAATATGGAAGCGCCAATTTTAAAAGAAAAAGGGTGGGATCAAATAATTAGAAATTTTCATAAATGCACCCTTATTTAATAATGAAAGAAATAAAAAAGGTAAAATACGTATTAGATAAATTAGTATTTAAGTAATTAGAGAAATAAAACCCTAGCGATTCGAGTCTCCATCTTGGTCGCAAGTAGCAATATATCCCTCTCTGAAGGTGGACTTGCGATGGAGAAGTCGGAATGGGTGGCTTCCACCGCATATTATTGAGGTAATAATGTCCAAACTCTCGTTCGTCAATTTGCCCCTTTGCAGTGTGGTCTCTAAAATTTGGAATGATGCTGTTTTAAATCATACGTCAACTTGTAAATTCACTCCAGACTCTTTCTTTCTGTGTACGTTTGTAAAGAAGATGTATTGTATCGAGTTTGACCCGAAACATTTGGGAGGGTTTAATTTTGTTGCCTCAATTCCCTTTGAACAAGGTTATTATAAGTATTGCTTTGCTAACAGTTCGTGTAATGGACTGCTGTTAGTTTTCAGGTTTGGGCACAACGTCCCTTATTGTGCCGGCATATTAAATCCGCTCACTAATGACTACATCAAACTTCCTCCTAATCCTTTTTATGGCCACGAAGATGAAAAATTCTACCATTACGGATTTGGTTTTAGCCCCAGCACAAAACGCTACAAAATAGCCCGAATTTCCTATCTTAGAAAAACAGAGACCAATTTCAATCTTGAAATTTTAACATTCGGTGGAACCAACCAATGGAGATTTGTCTGTTCTCTGCCTCCTGTTTCCATTCAAGGACGCGGTTTTTACTTTGATGGAGCTCTTTATTGGCTGGGTATACACAAGAAAAGATTTCATGTTATTTGTCGTGTGGATGTTGAAAAAGAGAAATTTGATATGACTTATCTTCCAAAGGTTGTGTTTGCTTCTACCATATATGTGTCCCTTCAGCCATTTAATGGCACTCTTTATGCAACTTTTTCTTCCATCAACCCACCTTATAAGATTGAAGTGTGGAGGATGCAAAGTTATGGATTAATCAAAGATTCGTGGATAAAAGAATTTGTTATTGATAACTACTTAAACTTTTATCCGTTTAAAATTCGATTCCTGAAACTCATCAAAGCCTATGAAAATGGAGACATCTTACTTCATATCAATTCTTCATGTTTTGCTTTGTTTGATACAAAGATTGGGATGATGAAGCCAGTGCATCAAGTTGAGGAAATCAGCACAAGTGTATATCTAGATTCCCTGAGTTTTGATTCTCTCCAAAATGTTTTGTTCCAAAATGGTGGTTGA

mRNA sequence

ATGGAAAACCGATTCGAGTCTCCATCTTGGTCGCAAGTAGCAATATATCCCTCTCTGAAGGTGGACTTGCGATGGAGAAGTCGGAATGGGTGGCTTCCACCGCATATTATTGAGATGTATTGTATCGAGTTTGACCCGAAACATTTGGGAGGGTTTAATTTTGTTGCCTCAATTCCCTTTGAACAAGGTTATTATAAGTATTGCTTTGCTAACAGTTCGTGTAATGGACTGCTGTTAGTTTTCAGGTTTGGGCACAACGTCCCTTATTGTGCCGGCATATTAAATCCGCTCACTAATGACTACATCAAACTTCCTCCTAATCCTTTTTATGGCCACGAAGATGAAAAATTCTACCATTACGGATTTGGTTTTAGCCCCAGCACAAAACGCTACAAAATAGCCCGAATTTCCTATCTTAGAAAAACAGAGACCAATTTCAATCTTGAAATTTTAACATTCGGTGGAACCAACCAATGGAGATTTGTCTGTTCTCTGCCTCCTGTTTCCATTCAAGGACGCGGTTTTTACTTTGATGGAGCTCTTTATTGGCTGGGTATACACAAGAAAAGATTTCATGTTATTTGTCGTGTGGATGTTGAAAAAGAGAAATTTGATATGACTTATCTTCCAAAGGTTGTGTTTGCTTCTACCATATATGTGTCCCTTCAGCCATTTAATGGCACTCTTTATGCAACTTTTTCTTCCATCAACCCACCTTATAAGATTGAAGTGTGGAGGATGCAAAGTTATGGATTAATCAAAGATTCGTGGATAAAAGAATTTGTTATTGATAACTACTTAAACTTTTATCCGTTTAAAATTCGATTCCTGAAACTCATCAAAGCCTATGAAAATGGAGACATCTTACTTCATATCAATTCTTCATGTTTTGCTTTGTTTGATACAAAGATTGGGATGATGAAGCCAGTGCATCAAGTTGAGGAAATCAGCACAAGTGTATATCTAGATTCCCTGAGTTTTGATTCTCTCCAAAATGTTTTGTTCCAAAATGGTGGTTGA

Coding sequence (CDS)

ATGGAAAACCGATTCGAGTCTCCATCTTGGTCGCAAGTAGCAATATATCCCTCTCTGAAGGTGGACTTGCGATGGAGAAGTCGGAATGGGTGGCTTCCACCGCATATTATTGAGATGTATTGTATCGAGTTTGACCCGAAACATTTGGGAGGGTTTAATTTTGTTGCCTCAATTCCCTTTGAACAAGGTTATTATAAGTATTGCTTTGCTAACAGTTCGTGTAATGGACTGCTGTTAGTTTTCAGGTTTGGGCACAACGTCCCTTATTGTGCCGGCATATTAAATCCGCTCACTAATGACTACATCAAACTTCCTCCTAATCCTTTTTATGGCCACGAAGATGAAAAATTCTACCATTACGGATTTGGTTTTAGCCCCAGCACAAAACGCTACAAAATAGCCCGAATTTCCTATCTTAGAAAAACAGAGACCAATTTCAATCTTGAAATTTTAACATTCGGTGGAACCAACCAATGGAGATTTGTCTGTTCTCTGCCTCCTGTTTCCATTCAAGGACGCGGTTTTTACTTTGATGGAGCTCTTTATTGGCTGGGTATACACAAGAAAAGATTTCATGTTATTTGTCGTGTGGATGTTGAAAAAGAGAAATTTGATATGACTTATCTTCCAAAGGTTGTGTTTGCTTCTACCATATATGTGTCCCTTCAGCCATTTAATGGCACTCTTTATGCAACTTTTTCTTCCATCAACCCACCTTATAAGATTGAAGTGTGGAGGATGCAAAGTTATGGATTAATCAAAGATTCGTGGATAAAAGAATTTGTTATTGATAACTACTTAAACTTTTATCCGTTTAAAATTCGATTCCTGAAACTCATCAAAGCCTATGAAAATGGAGACATCTTACTTCATATCAATTCTTCATGTTTTGCTTTGTTTGATACAAAGATTGGGATGATGAAGCCAGTGCATCAAGTTGAGGAAATCAGCACAAGTGTATATCTAGATTCCCTGAGTTTTGATTCTCTCCAAAATGTTTTGTTCCAAAATGGTGGTTGA

Protein sequence

MENRFESPSWSQVAIYPSLKVDLRWRSRNGWLPPHIIEMYCIEFDPKHLGGFNFVASIPFEQGYYKYCFANSSCNGLLLVFRFGHNVPYCAGILNPLTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARISYLRKTETNFNLEILTFGGTNQWRFVCSLPPVSIQGRGFYFDGALYWLGIHKKRFHVICRVDVEKEKFDMTYLPKVVFASTIYVSLQPFNGTLYATFSSINPPYKIEVWRMQSYGLIKDSWIKEFVIDNYLNFYPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMKPVHQVEEISTSVYLDSLSFDSLQNVLFQNGG

Homology

[Close]

BLAST of LsiUNG001020 vs. TrEMBL
Match: A0A0A0LSE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011590 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.7e-36
Identity = 112/325 (34.46%), Postives = 178/325 (54.77%), Query Frame = 1


Query: 39  MYCIEFDPKHLG-----GFNFVASIPFEQGY-YKYCFANSSCNGLLLVFRFGHNVPYC-- 98
           M+C+ FD   L            S  FE G  YK     +SCNGLLL+++    +P C  
Sbjct: 78  MHCLRFDNLDLDLDLDLELEVNKSSSFEAGVVYKLI---NSCNGLLLIYK----LPLCFP 137

Query: 99  ------AGILNPLTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARISY---LRK 158
                  GI NP+TN++ ++P      H++   YHYGFGF P+TK+YK+ R+++   +R 
Sbjct: 138 GEFLLRVGIFNPMTNEFFQVP------HDEIVEYHYGFGFIPATKQYKLFRVNFPLNVRP 197

Query: 159 TETN--FNLEILTFGGT-------NQWRFVCSLPPVSIQGRGFYFDGALYWLGIHKKR-F 218
            E N   +L++LTFG +       +QWR + SLP   ++  G + +G +YWLG  K++  
Sbjct: 198 EEPNSVSHLDVLTFGRSEIIDPKQSQWRRLYSLPG-GVENHGAHVNGVIYWLGEGKEQNE 257

Query: 219 HVICRVDVEKEKFDMTYLPKVVFASTIYVSLQPFNGTLYATFSSINPPYKIEVWRMQSYG 278
           +V+  +DVE EK  ++ + +VV  + +++S+Q FNGT+YA F   +     +VWRMQ   
Sbjct: 258 YVVYTLDVETEKIQLSAVLEVV--NPMWMSIQQFNGTVYAVF---HMEEATQVWRMQE-- 317

Query: 279 LIKDSWIKEFVIDNYLNFYPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMK--P 335
             K+SWI++FVID+           L L+KAYENG++L  +  + F L++   G  K   
Sbjct: 318 --KNSWIRDFVIDDC---------NLTLVKAYENGEMLCMVKPTVFWLYNPSTGSKKVLS 370

[Close]

BLAST of LsiUNG001020 vs. TrEMBL
Match: A0A0A0KJY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-35
Identity = 113/325 (34.77%), Postives = 162/325 (49.85%), Query Frame = 1


Query: 39  MYCIEFDPKHLGGFNFVASIPFEQGYYKYCFANSS------CNGLLLVF---RFGHNVPY 98
           +YC++FDP +  G N + S  F     K+  ++SS      CNGLL +    R   +V Y
Sbjct: 71  LYCVDFDPMYFEGMNSIGSFTFHP---KFSTSDSSISIINACNGLLSLLISKRKLGSVSY 130

Query: 99  CAGILNPLTNDYIKLPPNPFYGHED-EKFYHYGFGFSPSTKRYKIARISYLRKTETNFNL 158
             GILNP+TN+Y K P      H    + Y YG GF+P TK+YKIAR S+ R  E+   +
Sbjct: 131 VLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSF-RPDESTTLV 190

Query: 159 EILTFGGTNQ-WRFVCSLPPVSIQGRGFYFDGALYWLG----IHKKRFHVICRVDVEKEK 218
           EI TFG T+Q W  V  LP + ++  G YF G LYW+      H      I R+D+E EK
Sbjct: 191 EIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAIYRLDLENEK 250

Query: 219 FDMTYLPKVVFASTIYVSLQPFNGTLYATFSSINPPYKIEVWRMQSYGLIKDSWIKEFVI 278
            +    P+ +     +     F+GTLY T S  N   K +VW+M+       SWIK FVI
Sbjct: 251 LEKISCPQYIGGHFFF---GVFDGTLYLTVSKNN---KYQVWKMKD----NFSWIKAFVI 310

Query: 279 DNYLNF-------YPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMKPVH----Q 338
               N         P+ +  L  IKA E+G IL  +      L+D K    + +     +
Sbjct: 311 SRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVK 370

[Close]

BLAST of LsiUNG001020 vs. TrEMBL
Match: A0A0A0LWG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 111/331 (33.53%), Postives = 176/331 (53.17%), Query Frame = 1


Query: 38  EMYCIEFDPKHLGG-FNF--------VASIPFEQGYYKYCFANSSCNGLLLVFRFGHNVP 97
           +M+CI  D + L   F+F         AS+ F+  +        SCNGL+L+ +   +  
Sbjct: 90  KMHCINLDTRQLSNDFDFDLESEFIKSASLQFDGDWTYTIIMAGSCNGLMLISKCS-DYT 149

Query: 98  YCAGILNPLTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARI----SYLRKT-- 157
           +C GI NP+TN+++++  +  +    + FY YGFGFSP TK+YK+ R+       R+T  
Sbjct: 150 WCQGIFNPMTNEFLQVSEHGTF----DDFYLYGFGFSPITKQYKLFRVFDKGFRCRRTSS 209

Query: 158 --ETNFNLEILTFG--GT-------NQWRFVCSLPPVSIQGRGFYFDGALYWL----GIH 217
             +T++ +E+LTFG  GT       NQWR + +L P  I   G Y +G +YWL    G  
Sbjct: 210 TVDTHYTMEVLTFGRSGTNHSIPIHNQWRRLHTL-PFEIVADGVYLNGIIYWLVKEKGKD 269

Query: 218 KKRFHVICRVDVEKEKFDMTYLPKVVFASTIYVSLQPFNGTLYATFSSIN---PPYKIEV 277
           K++ +VI  +DVE E  +MT + +V   S  Y  +  FNGT+YATF  IN       I+V
Sbjct: 270 KEKKYVIYALDVETEHIEMTVVLQV--PSNGYGKIHQFNGTIYATF-HINWEKDSRTIQV 329

Query: 278 WRMQSYGLIKDSWIKEFVIDNYLNFYPFKIRFLKLIKAYENGDILLHINSSCFALFDTKI 335
           WRMQ     KDSW+++FVI +    +      L+LIK +E+ +IL  IN   F  ++   
Sbjct: 330 WRMQE----KDSWVRKFVICDISREW----IHLQLIKMFEDEEILFMINMDFFCFYNPSS 389

[Close]

BLAST of LsiUNG001020 vs. TrEMBL
Match: A0A0A0KSJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643290 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.1e-30
Identity = 98/313 (31.31%), Postives = 161/313 (51.44%), Query Frame = 1


Query: 38  EMYCIEFDPKHLGGFNFVASIPFEQGYYKYCFAN-SSCNGLLLVFRFGHNVPYCAGILNP 97
           +MYCI+ +  +    N +AS  F+   + Y     +SCNGLL + + G    +C GILNP
Sbjct: 89  KMYCIDINRTN----NLIASFVFDNNDWPYKIKILNSCNGLLYIHKVGDE-NFCNGILNP 148

Query: 98  LTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARISYLRKTETNFNLEILTFGG- 157
           +TN++  L   P   +ED   + YGFGF+  TK+YK+ +  +  + +++  +E++ FG  
Sbjct: 149 MTNEFFILSTQPKVKNEDISCF-YGFGFNLKTKQYKLFKAIH-DEEDSHLMMEVMRFGKN 208

Query: 158 --TNQWRFVCSLPPVSIQGRGFYFDGALYWLGIHKKRFHVICRVDVEKEKFDMTYLPKV- 217
             T +WR +  LP V     G Y +G +YW+G  K+   VI  ++VE EK +   + KV 
Sbjct: 209 EETKEWRHLTCLPFV-FYCDGVYLNGVIYWIGRQKENKSVIYSLNVETEKIESITVLKVD 268

Query: 218 --VFASTIYVSLQPFNGTLYAT-FSSINPPYKIEVWRMQSYGLIKDSWIKEFVIDNYLNF 277
                S     +  +NG LYAT +       K+++W MQ     KD W+KEFV+ +  + 
Sbjct: 269 PSYNTSDYGYYIGKYNGNLYATIWIHGTCCKKVQLWMMQG----KDCWVKEFVVHDIEDR 328

Query: 278 YPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMKPVHQVEEISTS--------VY 335
           Y     FL L+K +E+G+   ++ S     +D     +K   +++ +S           +
Sbjct: 329 Y--VDAFLVLVKIFEDGERWFYVGSRLILCYDKTGTQIKKKCRMKRVSNGRGNLVGQLCH 387

[Close]

BLAST of LsiUNG001020 vs. TrEMBL
Match: A0A0A0M1M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.0e-29
Identity = 106/322 (32.92%), Postives = 163/322 (50.62%), Query Frame = 1


Query: 39  MYCIEFDPKHLGGFNFVASIPFE----QGYYKYCFANSSCNGLLLVF-----RFGHNVPY 98
           ++C+EFDP+H  G + VAS  F      G  +    NS C+GL+ +      R GH +  
Sbjct: 74  LHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINS-CSGLISLIINKRRRRGHRLDL 133

Query: 99  CAGILNPLTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARISYLRKTETNFNLE 158
              +LNP+TN+Y KLP +   G      Y YG GFSP+T +YK+AR  +   T   F ++
Sbjct: 134 VC-VLNPITNEYFKLPTSRSKGDRVPN-YCYGLGFSPTTNQYKLARTHF---THDEFIVD 193

Query: 159 ILTFGGTNQWRFVCSLPPVSIQGRGFYFDGALYWLGIHK-------KRFHVICRVDVEKE 218
           I  FG + +W  V S+P    +  G Y +G LYW+G  K           VI R+D++ E
Sbjct: 194 IFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEVIYRLDLKDE 253

Query: 219 KFDMTYLPKVVFASTIYVSLQPFNGTLYATFSSINPPYKIEVWRMQSYGLIKDSWIKEFV 278
           KF+    P +      Y+++  +NGTLY TF   +  Y    W+M+       SW KEFV
Sbjct: 254 KFEKISFP-LDGGDDPYIAV--YNGTLYLTFCCEDFDY--HAWKMEE----DFSWSKEFV 313

Query: 279 ------IDNYLNFYPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMKPV-HQVEE 335
                 + + L  +P    +L+LIK  E+G+IL         L+D     ++ + +Q  E
Sbjct: 314 LALPENVHHSLRHHPIGY-YLQLIKFCEDGNILCLYAGILLILYDPSTQTVEILTNQDFE 373

[Close]

BLAST of LsiUNG001020 vs. NCBI nr
Match: gi|778664711|ref|XP_011660339.1| (PREDICTED: putative F-box protein At1g32420 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 8.1e-36
Identity = 112/325 (34.46%), Postives = 178/325 (54.77%), Query Frame = 1


Query: 39  MYCIEFDPKHLG-----GFNFVASIPFEQGY-YKYCFANSSCNGLLLVFRFGHNVPYC-- 98
           M+C+ FD   L            S  FE G  YK     +SCNGLLL+++    +P C  
Sbjct: 78  MHCLRFDNLDLDLDLDLELEVNKSSSFEAGVVYKLI---NSCNGLLLIYK----LPLCFP 137

Query: 99  ------AGILNPLTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARISY---LRK 158
                  GI NP+TN++ ++P      H++   YHYGFGF P+TK+YK+ R+++   +R 
Sbjct: 138 GEFLLRVGIFNPMTNEFFQVP------HDEIVEYHYGFGFIPATKQYKLFRVNFPLNVRP 197

Query: 159 TETN--FNLEILTFGGT-------NQWRFVCSLPPVSIQGRGFYFDGALYWLGIHKKR-F 218
            E N   +L++LTFG +       +QWR + SLP   ++  G + +G +YWLG  K++  
Sbjct: 198 EEPNSVSHLDVLTFGRSEIIDPKQSQWRRLYSLPG-GVENHGAHVNGVIYWLGEGKEQNE 257

Query: 219 HVICRVDVEKEKFDMTYLPKVVFASTIYVSLQPFNGTLYATFSSINPPYKIEVWRMQSYG 278
           +V+  +DVE EK  ++ + +VV  + +++S+Q FNGT+YA F   +     +VWRMQ   
Sbjct: 258 YVVYTLDVETEKIQLSAVLEVV--NPMWMSIQQFNGTVYAVF---HMEEATQVWRMQE-- 317

Query: 279 LIKDSWIKEFVIDNYLNFYPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMK--P 335
             K+SWI++FVID+           L L+KAYENG++L  +  + F L++   G  K   
Sbjct: 318 --KNSWIRDFVIDDC---------NLTLVKAYENGEMLCMVKPTVFWLYNPSTGSKKVLS 370

[Close]

BLAST of LsiUNG001020 vs. NCBI nr
Match: gi|449433922|ref|XP_004134745.1| (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 4.0e-35
Identity = 113/325 (34.77%), Postives = 162/325 (49.85%), Query Frame = 1


Query: 39  MYCIEFDPKHLGGFNFVASIPFEQGYYKYCFANSS------CNGLLLVF---RFGHNVPY 98
           +YC++FDP +  G N + S  F     K+  ++SS      CNGLL +    R   +V Y
Sbjct: 71  LYCVDFDPMYFEGMNSIGSFTFHP---KFSTSDSSISIINACNGLLSLLISKRKLGSVSY 130

Query: 99  CAGILNPLTNDYIKLPPNPFYGHED-EKFYHYGFGFSPSTKRYKIARISYLRKTETNFNL 158
             GILNP+TN+Y K P      H    + Y YG GF+P TK+YKIAR S+ R  E+   +
Sbjct: 131 VLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSF-RPDESTTLV 190

Query: 159 EILTFGGTNQ-WRFVCSLPPVSIQGRGFYFDGALYWLG----IHKKRFHVICRVDVEKEK 218
           EI TFG T+Q W  V  LP + ++  G YF G LYW+      H      I R+D+E EK
Sbjct: 191 EIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAIYRLDLENEK 250

Query: 219 FDMTYLPKVVFASTIYVSLQPFNGTLYATFSSINPPYKIEVWRMQSYGLIKDSWIKEFVI 278
            +    P+ +     +     F+GTLY T S  N   K +VW+M+       SWIK FVI
Sbjct: 251 LEKISCPQYIGGHFFF---GVFDGTLYLTVSKNN---KYQVWKMKD----NFSWIKAFVI 310

Query: 279 DNYLNF-------YPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMKPVH----Q 338
               N         P+ +  L  IKA E+G IL  +      L+D K    + +     +
Sbjct: 311 SRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVK 370

[Close]

BLAST of LsiUNG001020 vs. NCBI nr
Match: gi|700210076|gb|KGN65172.1| (hypothetical protein Csa_1G257290 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 2.2e-33
Identity = 111/331 (33.53%), Postives = 176/331 (53.17%), Query Frame = 1


Query: 38  EMYCIEFDPKHLGG-FNF--------VASIPFEQGYYKYCFANSSCNGLLLVFRFGHNVP 97
           +M+CI  D + L   F+F         AS+ F+  +        SCNGL+L+ +   +  
Sbjct: 90  KMHCINLDTRQLSNDFDFDLESEFIKSASLQFDGDWTYTIIMAGSCNGLMLISKCS-DYT 149

Query: 98  YCAGILNPLTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARI----SYLRKT-- 157
           +C GI NP+TN+++++  +  +    + FY YGFGFSP TK+YK+ R+       R+T  
Sbjct: 150 WCQGIFNPMTNEFLQVSEHGTF----DDFYLYGFGFSPITKQYKLFRVFDKGFRCRRTSS 209

Query: 158 --ETNFNLEILTFG--GT-------NQWRFVCSLPPVSIQGRGFYFDGALYWL----GIH 217
             +T++ +E+LTFG  GT       NQWR + +L P  I   G Y +G +YWL    G  
Sbjct: 210 TVDTHYTMEVLTFGRSGTNHSIPIHNQWRRLHTL-PFEIVADGVYLNGIIYWLVKEKGKD 269

Query: 218 KKRFHVICRVDVEKEKFDMTYLPKVVFASTIYVSLQPFNGTLYATFSSIN---PPYKIEV 277
           K++ +VI  +DVE E  +MT + +V   S  Y  +  FNGT+YATF  IN       I+V
Sbjct: 270 KEKKYVIYALDVETEHIEMTVVLQV--PSNGYGKIHQFNGTIYATF-HINWEKDSRTIQV 329

Query: 278 WRMQSYGLIKDSWIKEFVIDNYLNFYPFKIRFLKLIKAYENGDILLHINSSCFALFDTKI 335
           WRMQ     KDSW+++FVI +    +      L+LIK +E+ +IL  IN   F  ++   
Sbjct: 330 WRMQE----KDSWVRKFVICDISREW----IHLQLIKMFEDEEILFMINMDFFCFYNPSS 389

[Close]

BLAST of LsiUNG001020 vs. NCBI nr
Match: gi|449447693|ref|XP_004141602.1| (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 8.7e-30
Identity = 98/313 (31.31%), Postives = 161/313 (51.44%), Query Frame = 1


Query: 38  EMYCIEFDPKHLGGFNFVASIPFEQGYYKYCFAN-SSCNGLLLVFRFGHNVPYCAGILNP 97
           +MYCI+ +  +    N +AS  F+   + Y     +SCNGLL + + G    +C GILNP
Sbjct: 89  KMYCIDINRTN----NLIASFVFDNNDWPYKIKILNSCNGLLYIHKVGDE-NFCNGILNP 148

Query: 98  LTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARISYLRKTETNFNLEILTFGG- 157
           +TN++  L   P   +ED   + YGFGF+  TK+YK+ +  +  + +++  +E++ FG  
Sbjct: 149 MTNEFFILSTQPKVKNEDISCF-YGFGFNLKTKQYKLFKAIH-DEEDSHLMMEVMRFGKN 208

Query: 158 --TNQWRFVCSLPPVSIQGRGFYFDGALYWLGIHKKRFHVICRVDVEKEKFDMTYLPKV- 217
             T +WR +  LP V     G Y +G +YW+G  K+   VI  ++VE EK +   + KV 
Sbjct: 209 EETKEWRHLTCLPFV-FYCDGVYLNGVIYWIGRQKENKSVIYSLNVETEKIESITVLKVD 268

Query: 218 --VFASTIYVSLQPFNGTLYAT-FSSINPPYKIEVWRMQSYGLIKDSWIKEFVIDNYLNF 277
                S     +  +NG LYAT +       K+++W MQ     KD W+KEFV+ +  + 
Sbjct: 269 PSYNTSDYGYYIGKYNGNLYATIWIHGTCCKKVQLWMMQG----KDCWVKEFVVHDIEDR 328

Query: 278 YPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMKPVHQVEEISTS--------VY 335
           Y     FL L+K +E+G+   ++ S     +D     +K   +++ +S           +
Sbjct: 329 Y--VDAFLVLVKIFEDGERWFYVGSRLILCYDKTGTQIKKKCRMKRVSNGRGNLVGQLCH 387

[Close]

BLAST of LsiUNG001020 vs. NCBI nr
Match: gi|449436028|ref|XP_004135796.1| (PREDICTED: putative F-box protein At1g46984 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 106/322 (32.92%), Postives = 163/322 (50.62%), Query Frame = 1


Query: 39  MYCIEFDPKHLGGFNFVASIPFE----QGYYKYCFANSSCNGLLLVF-----RFGHNVPY 98
           ++C+EFDP+H  G + VAS  F      G  +    NS C+GL+ +      R GH +  
Sbjct: 74  LHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINS-CSGLISLIINKRRRRGHRLDL 133

Query: 99  CAGILNPLTNDYIKLPPNPFYGHEDEKFYHYGFGFSPSTKRYKIARISYLRKTETNFNLE 158
              +LNP+TN+Y KLP +   G      Y YG GFSP+T +YK+AR  +   T   F ++
Sbjct: 134 VC-VLNPITNEYFKLPTSRSKGDRVPN-YCYGLGFSPTTNQYKLARTHF---THDEFIVD 193

Query: 159 ILTFGGTNQWRFVCSLPPVSIQGRGFYFDGALYWLGIHK-------KRFHVICRVDVEKE 218
           I  FG + +W  V S+P    +  G Y +G LYW+G  K           VI R+D++ E
Sbjct: 194 IFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEVIYRLDLKDE 253

Query: 219 KFDMTYLPKVVFASTIYVSLQPFNGTLYATFSSINPPYKIEVWRMQSYGLIKDSWIKEFV 278
           KF+    P +      Y+++  +NGTLY TF   +  Y    W+M+       SW KEFV
Sbjct: 254 KFEKISFP-LDGGDDPYIAV--YNGTLYLTFCCEDFDY--HAWKMEE----DFSWSKEFV 313

Query: 279 ------IDNYLNFYPFKIRFLKLIKAYENGDILLHINSSCFALFDTKIGMMKPV-HQVEE 335
                 + + L  +P    +L+LIK  E+G+IL         L+D     ++ + +Q  E
Sbjct: 314 LALPENVHHSLRHHPIGY-YLQLIKFCEDGNILCLYAGILLILYDPSTQTVEILTNQDFE 373

The following BLAST results are available for this feature:

BLAST of LsiUNG001020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of LsiUNG001020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSE0_CUCSA	5.7e-36	34.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011590 PE=4 SV=1	[more]
A0A0A0KJY9_CUCSA	2.8e-35	34.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1	[more]
A0A0A0LWG1_CUCSA	1.5e-33	33.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257290 PE=4 SV=1	[more]
A0A0A0KSJ2_CUCSA	6.1e-30	31.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643290 PE=4 SV=1	[more]
A0A0A0M1M5_CUCSA	1.0e-29	32.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1	[more]

BLAST of LsiUNG001020 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of LsiUNG001020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664711\|ref\|XP_011660339.1\|	8.1e-36	34.46	PREDICTED: putative F-box protein At1g32420 [Cucumis sativus]	[more]
gi\|449433922\|ref\|XP_004134745.1\|	4.0e-35	34.77	PREDICTED: F-box protein At3g07870-like [Cucumis sativus]	[more]
gi\|700210076\|gb\|KGN65172.1\|	2.2e-33	33.53	hypothetical protein Csa_1G257290 [Cucumis sativus]	[more]
gi\|449447693\|ref\|XP_004141602.1\|	8.7e-30	31.31	PREDICTED: F-box protein At3g07870-like [Cucumis sativus]	[more]
gi\|449436028\|ref\|XP_004135796.1\|	1.5e-29	32.92	PREDICTED: putative F-box protein At1g46984 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017451	F-box-assoc_interact_dom
IPR013187	F-box-assoc_dom_typ3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG001020.1	LsiUNG001020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013187	F-box associated domain, type 3	PFAM	PF08268	FBA_3	coord: 175..291 score: 3.
IPR017451	F-box associated interaction domain	TIGRFAMs	TIGR01640	TIGR01640	coord: 72..272 score: 1.5
None	No IPR available	PANTHER	PTHR31790	FAMILY NOT NAMED	coord: 24..310 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
LsiUNG001020	Watermelon (97103) v2	lsiwmbB003
LsiUNG001020	Wax gourd	lsiwgoB005
LsiUNG001020	Cucumber (Gy14) v1	cgylsiB056
LsiUNG001020	Cucurbita maxima (Rimu)	cmalsiB045
LsiUNG001020	Cucurbita maxima (Rimu)	cmalsiB082
LsiUNG001020	Cucurbita moschata (Rifu)	cmolsiB030
LsiUNG001020	Cucurbita moschata (Rifu)	cmolsiB071
LsiUNG001020	Cucurbita pepo (Zucchini)	cpelsiB280
LsiUNG001020	Cucurbita pepo (Zucchini)	cpelsiB519
LsiUNG001020	Wild cucumber (PI 183967)	cpilsiB000
LsiUNG001020	Cucumber (Chinese Long) v2	culsiB000
LsiUNG001020	Melon (DHL92) v3.5.1	lsimeB001
LsiUNG001020	Watermelon (Charleston Gray)	lsiwcgB004
LsiUNG001020	Watermelon (97103) v1	lsiwmB006
LsiUNG001020	Cucumber (Gy14) v2	cgyblsiB001
LsiUNG001020	Melon (DHL92) v3.6.1	lsimedB001
LsiUNG001020	Silver-seed gourd	carlsiB455
LsiUNG001020	Cucumber (Chinese Long) v3	cuclsiB000