LsiUNG000880 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	LsiUNG000880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NAC transcription factor-like protein
Location	chr00 : 2547742 .. 2549321 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGGATTTTTCAACCGGTTGTTTACCATTGCCATTGAACCATTACGTGGGCGTCAAATTTAGGCCTACCGATCAACAACTTCTTCACTATCTTCATTGTAAGATTTATAGTCTCCCATATTTTCAAGGCGCTATTTTCGACTTTGATCTTTATGGTGGAACCGAGCCATGGGAAATCTGGCAACTTTTTGAAGGCATTGACGGTGAAGATCTCTATTTCTTCACCAAACTTAAGAGGTCGACAACAAACTCTGGACGTTTGTCAGCACACATCAATCGTAAGATTGGCCTAGCCAATGCCACTTGGAGTGGTGAGAACTCAGCCACTCCAATTTTTGTTGCTGCTGATTCTAATGAGCAAATAATCGGATATACCAAGCGCTTTAGGTACGTTCTTTAGTTTTACTTTTAAGACTCGTTTGGCTTGACTTTTTAAGTGTTTAAATAAATATGTTCATAAGTGCAAAAAAAAGTGTTAACATTTAAAAAGTAAATCCAAACGGGCCCTAGTATTTGCATTAGTCATTTGTGGAATTAATTCGGTTATCTAATTCCAGTTTAATTGTTTGGTTTTGTTATTACTCTTGAACCACATGTGTGTTTCTCCATATCCACCAATCTAAATCTAGTTTTTTAAGGTAGTTGCAATGGGTAGCACTTTTAAGGCTAATAATTTAAGTGTATAACAATATTTTTAAAGAATTATAAATATAACAAAATCTATCAATTATAGATTTCTATTAGTGATAGACTCTATTGTTGATAAATTCCTATCAATGTAAACTCTGAAAGCTGTATCTAAATTTTGTTTATCTGCAAATTGTTTTCCATTGAGTTATATCTGCTAATACTTTGGTTTGATTGCTATATTTGCAGTCGCCCGTTTTTTTAATTGTGTGTGTTTTTGTCCTTGGAAACTTTAAGTTGTAAGGAAACGGTCATGATATTTACTTCATTTGGTATTTTAAAATAAATGATATTATTTTGTAAATTATATTGTAGGTATGAGAATGACCAATTGCAAGAACACCATGGAAAATGGATAATGTATGAATATAGCTTGCATCCAAATTATTTGTTGTGCGAAGGTGCAGATCCCAATTATGTTTTATGTCGGATGAGGAAGAATGAAAGAGCTAAAAGAAAATTAGAACAGGGTGAATTGCAACAACCTAAAAAGAAAAGAATAACTGCACCTACGATCTCTTGTAATGAAAGTCCGAAGATAAAAGCAAGTAAAAGATGTTTTGTTGGGTTGGAACCGGCAAAGCAAAGAGTAATGACACATGATGATATCACCAAAGCACTTGTCGTGCCTGAAATGACTACTAATCAAGATATTAGTATTGTAGTCAACGTGTCTGATATGACCACTAATCAAGATATTAGTGTTGTAGCTGACGTGCCTGATATGACCACTAATCAAGACAACATTGATCTGCTTGACATGCCTCTTATCCTCACACACGAAAGCACTAGTTTTGGTATTAAAGATGTACCTTGTGCGTTCACTAATGACAAATGGATAGATTATTTAGATTTAGGTAACATAAAGGACGTTGACTTTCAACCTGATATT

mRNA sequence

CAATGGATTTTTCAACCGGTTGTTTACCATTGCCATTGAACCATTACGTGGGCGTCAAATTTAGGCCTACCGATCAACAACTTCTTCACTATCTTCATTGTAAGATTTATAGTCTCCCATATTTTCAAGGCGCTATTTTCGACTTTGATCTTTATGGTGGAACCGAGCCATGGGAAATCTGGCAACTTTTTGAAGGCATTGACGGTGAAGATCTCTATTTCTTCACCAAACTTAAGAGGTCGACAACAAACTCTGGACGTTTGTCAGCACACATCAATCGTAAGATTGGCCTAGCCAATGCCACTTGGAGTGGTGAGAACTCAGCCACTCCAATTTTTAATGACCAATTGCAAGAACACCATGGAAAATGGATAATGTATGAATATAGCTTGCATCCAAATTATTTGTTGTGCGAAGGTGCAGATCCCAATTATGTTTTATGTCGGATGAGGAAGAATGAAAGAGCTAAAAGAAAATTAGAACAGGGTGAATTGCAACAACCTAAAAAGAAAAGAATAACTGCACCTACGATCTCTTGTAATGAAAGTCCGAAGATAAAAGCAAGTAAAAGATGTTTTGTTGGGTTGGAACCGGCAAAGCAAAGAGTAATGACACATGATGATATCACCAAAGCACTTGTCGTGCCTGAAATGACTACTAATCAAGATATTAGTATTGTAGTCAACGTGTCTGATATGACCACTAATCAAGATATTAGTGTTGTAGCTGACGTGCCTGATATGACCACTAATCAAGACAACATTGATCTGCTTGACATGCCTCTTATCCTCACACACGAAAGCACTAGTTTTGGTATTAAAGATGTACCTTGTGCGTTCACTAATGACAAATGGATAGATTATTTAGATTTAGGTAACATAAAGGACGTTGACTTTCAACCTGATATT

Coding sequence (CDS)

ATGGATTTTTCAACCGGTTGTTTACCATTGCCATTGAACCATTACGTGGGCGTCAAATTTAGGCCTACCGATCAACAACTTCTTCACTATCTTCATTGTAAGATTTATAGTCTCCCATATTTTCAAGGCGCTATTTTCGACTTTGATCTTTATGGTGGAACCGAGCCATGGGAAATCTGGCAACTTTTTGAAGGCATTGACGGTGAAGATCTCTATTTCTTCACCAAACTTAAGAGGTCGACAACAAACTCTGGACGTTTGTCAGCACACATCAATCGTAAGATTGGCCTAGCCAATGCCACTTGGAGTGGTGAGAACTCAGCCACTCCAATTTTTAATGACCAATTGCAAGAACACCATGGAAAATGGATAATGTATGAATATAGCTTGCATCCAAATTATTTGTTGTGCGAAGGTGCAGATCCCAATTATGTTTTATGTCGGATGAGGAAGAATGAAAGAGCTAAAAGAAAATTAGAACAGGGTGAATTGCAACAACCTAAAAAGAAAAGAATAACTGCACCTACGATCTCTTGTAATGAAAGTCCGAAGATAAAAGCAAGTAAAAGATGTTTTGTTGGGTTGGAACCGGCAAAGCAAAGAGTAATGACACATGATGATATCACCAAAGCACTTGTCGTGCCTGAAATGACTACTAATCAAGATATTAGTATTGTAGTCAACGTGTCTGATATGACCACTAATCAAGATATTAGTGTTGTAGCTGACGTGCCTGATATGACCACTAATCAAGACAACATTGATCTGCTTGACATGCCTCTTATCCTCACACACGAAAGCACTAGTTTTGGTATTAAAGATGTACCTTGTGCGTTCACTAATGACAAATGGATAGATTATTTAGATTTAGGTAACATAAAGGACGTTGACTTTCAACCTGATATT

Protein sequence

MDFSTGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIWQLFEGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIFNDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLEQGELQQPKKKRITAPTISCNESPKIKASKRCFVGLEPAKQRVMTHDDITKALVVPEMTTNQDISIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTHESTSFGIKDVPCAFTNDKWIDYLDLGNIKDVDFQPDI

Homology

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BLAST of LsiUNG000880 vs. TrEMBL
Match: A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.2e-93
Identity = 190/311 (61.09%), Postives = 214/311 (68.81%), Query Frame = 1


Query: 1   MDFSTGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIW 60
           MD S+G LPLPLNHYVGVKFRPTDQQLLHYLHCKIY  PYFQGA+FDFDLYGG EPWEIW
Sbjct: 1   MDSSSGSLPLPLNHYVGVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIW 60

Query: 61  QLFEGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIF-------- 120
           Q F GIDGEDLYFFTKLKRSTTNSG LS HINRKIGL N TWSGENSA+PI+        
Sbjct: 61  QSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQI 120

Query: 121 ----------NDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLE-Q 180
                     N+  +EHHG+WIM+EY+LHPNYL CEG DPNYVLCR+R+NERA+RKLE Q
Sbjct: 121 IGYRKRFRYENESSEEHHGEWIMHEYNLHPNYL-CEGVDPNYVLCRIRRNERARRKLEIQ 180

Query: 181 GELQQPKKKRITAPTISCNESPKIKASKRCFVGLEPAKQRVMTHDDITKALVVPEMTTNQ 240
           GEL+QP KKRI AP IS NE PK K  +RC        QR +T + I           N 
Sbjct: 181 GELKQPNKKRIKAPKISRNERPKAKTRERCDELQPIDDQRAITCETIY----------NS 240

Query: 241 DISIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTHESTSFGIKDV-PCAFT 292
           DI       DM T+QDISVV  +P+MTTNQDNI          +E+ S G +D  PC  T
Sbjct: 241 DIR-----HDMKTHQDISVVDYLPNMTTNQDNI----------NENISLGTEDYEPCMLT 285

[Close]

BLAST of LsiUNG000880 vs. TrEMBL
Match: A0A0A0KXM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 3.2e-91
Identity = 189/320 (59.06%), Postives = 217/320 (67.81%), Query Frame = 1


Query: 1   MDFSTGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIW 60
           MD S+G LPLPLNHYVGVKFRPTDQQLLHYLHCKIY  PYFQGA+FDFDLYGG EPWEIW
Sbjct: 1   MDSSSGYLPLPLNHYVGVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIW 60

Query: 61  QLFEGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIF-------- 120
           Q F GIDGEDLYFFTKLKRSTTNSG LS HINRKIGL N TWSGENSA+PI+        
Sbjct: 61  QSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQI 120

Query: 121 ----------NDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLE-Q 180
                     N+ L+EHHG+WIM+EYSLHP+YL CEG DPNYVLCR+RKN+RAKRKLE +
Sbjct: 121 IGYRKRFRYENESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETE 180

Query: 181 GELQQPKKKRITAPTISCNESP--KIKASKRCFVGLEPAKQRVMTHDDITKALVVPEMTT 240
            EL+Q  KKR+    IS NE P  K K  KRC   L+P  QR           ++ E   
Sbjct: 181 SELKQSNKKRMKVREISNNERPKAKTKTKKRC-DELQPIDQRA----------IICETIY 240

Query: 241 NQDISIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTHESTSFGIKD-VPCA 299
           N DI       D+ T+QDI+VV  VP+MTTNQDNI          +E+TS G K+ VPC 
Sbjct: 241 NSDIR-----HDVNTHQDITVVDHVPNMTTNQDNI----------NENTSLGTKEYVPCM 289

[Close]

BLAST of LsiUNG000880 vs. TrEMBL
Match: A0A0A0M0I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.7e-87
Identity = 180/304 (59.21%), Postives = 202/304 (66.45%), Query Frame = 1


Query: 4   STGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIWQLF 63
           S G LPLPLNHYVG+KFRPTDQQLLHYLHCKIY  PYFQGA+FDFDLYGG EPWEIWQ F
Sbjct: 34  SCGYLPLPLNHYVGLKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSF 93

Query: 64  EGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIF----------- 123
            GIDGEDLYFFTKLKRSTTN G LS H+NRKIGL N TWSGENSA+PI+           
Sbjct: 94  GGIDGEDLYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGY 153

Query: 124 -------NDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKL--EQGE 183
                  N+ L+EHHG+WIM+EYS+H  YL CEG D NYVLCRMRKNER KRKL   QGE
Sbjct: 154 RKRFRYENESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERVKRKLLEIQGE 213

Query: 184 LQQPKKKRITAPTISCNESPKIKASKRCFVGLEPAKQRVMTHDDITKALVVPEMTTNQDI 243
            +QP KKRI AP IS NE        RC   L+P  QR  T + I    + P        
Sbjct: 214 AKQPNKKRIKAPHISDNE--------RC-DELQPIDQRATTCETIYNLDIRP-------- 273

Query: 244 SIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTHESTSFGIKD-VPCAFTND 287
                  DM T+QDISVV  VP+MTTNQDN           +E+TS GI+D VPC   +D
Sbjct: 274 -------DMNTHQDISVVDRVPNMTTNQDN----------RNENTSLGIEDYVPCMPADD 303

[Close]

BLAST of LsiUNG000880 vs. TrEMBL
Match: A0A061FS95_THECC (Transcription factor-like protein OS=Theobroma cacao GN=TCM_044667 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.7e-26
Identity = 74/170 (43.53%), Postives = 98/170 (57.65%), Query Frame = 1


Query: 15  YVGVKFRPTDQQLLHYLHCKIYS---LPYFQGAIFDFDLYGGTEPWEIWQLFEGID---G 74
           +VG  F P+D+ L+ YL  K+ S   L + Q  I DFDLYG  EPWEIW L+ G +   G
Sbjct: 2   FVGFGFGPSDRSLMCYLFSKVTSKSMLHFDQDQIKDFDLYGEKEPWEIWDLYGGCNRQSG 61

Query: 75  EDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIFND-------------- 134
           EDLYFFTKLK+ + N  R    INR +G+   TW GE+S  PI++               
Sbjct: 62  EDLYFFTKLKKKSQNGSR----INRSVGM--GTWMGEDSGKPIYSQLSAIQPLVFKKRLR 121

Query: 135 ---QLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLEQ 162
               +    G+WIM+EYSL  N +L  G D  YVLCR+RKN+R ++K E+
Sbjct: 122 YEGGVPHQVGQWIMHEYSL--NTVLVPGNDQGYVLCRLRKNDRDEKKAEK 163

[Close]

BLAST of LsiUNG000880 vs. TrEMBL
Match: A0A061FR05_THECC (Transcription factor-like protein OS=Theobroma cacao GN=TCM_044639 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.9e-23
Identity = 72/170 (42.35%), Postives = 93/170 (54.71%), Query Frame = 1


Query: 15  YVGVKFRPTDQQLLHYLHCKIYS---LPYFQGAIFDFDLYGGTEPWEIWQLFEGID---G 74
           +VG  F P+D+ L+ YL  K+ S   L   Q  I DFDLYG  EPWEIW L  G +    
Sbjct: 2   FVGFGFEPSDRSLMCYLFSKVTSKSMLHLDQVQIKDFDLYGEKEPWEIWDLHGGFNLQSD 61

Query: 75  EDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIFN--------------- 134
           EDLYFFTKLK+ + N  R    INR +G    TW GE+S  PI++               
Sbjct: 62  EDLYFFTKLKKKSQNGSR----INRSVG--TGTWMGEDSGKPIYSRLSAIQPLGFKRRFR 121

Query: 135 --DQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLEQ 162
               + +  G+WIM+EYSL  N  L    D  YVLCR+RKN+R ++K E+
Sbjct: 122 YEGGVPQQVGQWIMHEYSL--NTTLVPENDQGYVLCRVRKNDREEKKAEK 163

[Close]

BLAST of LsiUNG000880 vs. NCBI nr
Match: gi|778688961|ref|XP_011652873.1| (PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.7e-93
Identity = 190/311 (61.09%), Postives = 214/311 (68.81%), Query Frame = 1


Query: 1   MDFSTGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIW 60
           MD S+G LPLPLNHYVGVKFRPTDQQLLHYLHCKIY  PYFQGA+FDFDLYGG EPWEIW
Sbjct: 1   MDSSSGSLPLPLNHYVGVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIW 60

Query: 61  QLFEGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIF-------- 120
           Q F GIDGEDLYFFTKLKRSTTNSG LS HINRKIGL N TWSGENSA+PI+        
Sbjct: 61  QSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQI 120

Query: 121 ----------NDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLE-Q 180
                     N+  +EHHG+WIM+EY+LHPNYL CEG DPNYVLCR+R+NERA+RKLE Q
Sbjct: 121 IGYRKRFRYENESSEEHHGEWIMHEYNLHPNYL-CEGVDPNYVLCRIRRNERARRKLEIQ 180

Query: 181 GELQQPKKKRITAPTISCNESPKIKASKRCFVGLEPAKQRVMTHDDITKALVVPEMTTNQ 240
           GEL+QP KKRI AP IS NE PK K  +RC        QR +T + I           N 
Sbjct: 181 GELKQPNKKRIKAPKISRNERPKAKTRERCDELQPIDDQRAITCETIY----------NS 240

Query: 241 DISIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTHESTSFGIKDV-PCAFT 292
           DI       DM T+QDISVV  +P+MTTNQDNI          +E+ S G +D  PC  T
Sbjct: 241 DIR-----HDMKTHQDISVVDYLPNMTTNQDNI----------NENISLGTEDYEPCMLT 285

[Close]

BLAST of LsiUNG000880 vs. NCBI nr
Match: gi|449448878|ref|XP_004142192.1| (PREDICTED: NAC transcription factor 29-like [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 4.6e-91
Identity = 189/320 (59.06%), Postives = 217/320 (67.81%), Query Frame = 1


Query: 1   MDFSTGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIW 60
           MD S+G LPLPLNHYVGVKFRPTDQQLLHYLHCKIY  PYFQGA+FDFDLYGG EPWEIW
Sbjct: 1   MDSSSGYLPLPLNHYVGVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIW 60

Query: 61  QLFEGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIF-------- 120
           Q F GIDGEDLYFFTKLKRSTTNSG LS HINRKIGL N TWSGENSA+PI+        
Sbjct: 61  QSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQI 120

Query: 121 ----------NDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLE-Q 180
                     N+ L+EHHG+WIM+EYSLHP+YL CEG DPNYVLCR+RKN+RAKRKLE +
Sbjct: 121 IGYRKRFRYENESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETE 180

Query: 181 GELQQPKKKRITAPTISCNESP--KIKASKRCFVGLEPAKQRVMTHDDITKALVVPEMTT 240
            EL+Q  KKR+    IS NE P  K K  KRC   L+P  QR           ++ E   
Sbjct: 181 SELKQSNKKRMKVREISNNERPKAKTKTKKRC-DELQPIDQRA----------IICETIY 240

Query: 241 NQDISIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTHESTSFGIKD-VPCA 299
           N DI       D+ T+QDI+VV  VP+MTTNQDNI          +E+TS G K+ VPC 
Sbjct: 241 NSDIR-----HDVNTHQDITVVDHVPNMTTNQDNI----------NENTSLGTKEYVPCM 289

[Close]

BLAST of LsiUNG000880 vs. NCBI nr
Match: gi|659131362|ref|XP_008465646.1| (PREDICTED: NAC domain-containing protein 72-like [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 2.3e-90
Identity = 183/318 (57.55%), Postives = 218/318 (68.55%), Query Frame = 1


Query: 1   MDFSTGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIW 60
           MD S+G LPLPLN YVGVKFRPTDQQLLHYL+CKI   PYFQGAIFDFDLYGGTEPWEIW
Sbjct: 1   MDSSSGYLPLPLNQYVGVKFRPTDQQLLHYLYCKINGQPYFQGAIFDFDLYGGTEPWEIW 60

Query: 61  QLFEGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIF-------- 120
           Q F+GIDGEDLYFFTKLKRST N G+LSAHI+RKIGLAN TWSGENSATPIF        
Sbjct: 61  QSFKGIDGEDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFANEDDEQI 120

Query: 121 ----------NDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLEQG 180
                     NDQ++EHHG+WIM+EY LH +YL  +  D NYVLCR+RKNERAKRKLE  
Sbjct: 121 IGYRKRFRYENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAKRKLEIR 180

Query: 181 ELQQPKKKRITAPTISCNESPKIKASKRCFVG-LEPAKQRVMTHDDITKALVVPEMTTNQ 240
           ELQQP KKR+TAP IS N+  K KA + C V  L+P + R+M  + I  + ++P      
Sbjct: 181 ELQQPNKKRMTAPKISPNKRLKTKAKESCLVDQLQPIEPRLMIRETIYNSNIIP------ 240

Query: 241 DISIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTH-ESTSFGIKDVPCAFT 299
                    D TT +DISVV  VP+M  NQDN+     PL+ T+ ES + G         
Sbjct: 241 ---------DKTTCEDISVVDHVPNMIANQDNV---YTPLMATNIESNNLGTGLNLGDLN 300

[Close]

BLAST of LsiUNG000880 vs. NCBI nr
Match: gi|659085698|ref|XP_008443554.1| (PREDICTED: protein SOMBRERO-like [Cucumis melo])

HSP 1 Score: 332.0 bits (850), Expect = 1.1e-87
Identity = 179/318 (56.29%), Postives = 207/318 (65.09%), Query Frame = 1


Query: 1   MDFSTGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIW 60
           MD S+G LPLP +H VGVKFRPTDQQLL YL CKIY  PYFQGA+FDFDLYGG EPWEIW
Sbjct: 1   MDSSSGYLPLPFSHCVGVKFRPTDQQLLRYLCCKIYDQPYFQGAVFDFDLYGGIEPWEIW 60

Query: 61  QLFEGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIF-------- 120
           Q F+GIDGEDLYFFTKLKRSTTNSG LS HINRKIG AN TWSGENSATPI+        
Sbjct: 61  QSFKGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGSANGTWSGENSATPIYANEDDHEQ 120

Query: 121 -----------NDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKLE- 180
                      NDQLQEHHG+WIM+EYSLH ++L C+G DPNYVLCR+RKNERAKRKL+ 
Sbjct: 121 IIGYRKRFRYENDQLQEHHGEWIMHEYSLHQDHLKCQGVDPNYVLCRIRKNERAKRKLKV 180

Query: 181 QGELQQPKKKRITAPTISCNESPKIKASKRCFVGLEPAKQRVMTHDDITKALVVPEMTTN 240
           Q EL+QP KKRI AP                   L+P    V+T + I  + +       
Sbjct: 181 QRELKQPNKKRIMAPD-----------------QLQPINHGVITRETIYNSNI------- 240

Query: 241 QDISIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTHESTSFGIKDVPCAFT 299
                   + DMTT+QD SVV  V +MTTNQDN          T+ STS G   + C  T
Sbjct: 241 --------MHDMTTHQDTSVVDHVTNMTTNQDN----------TNASTSLGALCLTCTPT 276

[Close]

BLAST of LsiUNG000880 vs. NCBI nr
Match: gi|700211551|gb|KGN66647.1| (hypothetical protein Csa_1G652300 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 5.3e-87
Identity = 180/304 (59.21%), Postives = 202/304 (66.45%), Query Frame = 1


Query: 4   STGCLPLPLNHYVGVKFRPTDQQLLHYLHCKIYSLPYFQGAIFDFDLYGGTEPWEIWQLF 63
           S G LPLPLNHYVG+KFRPTDQQLLHYLHCKIY  PYFQGA+FDFDLYGG EPWEIWQ F
Sbjct: 34  SCGYLPLPLNHYVGLKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSF 93

Query: 64  EGIDGEDLYFFTKLKRSTTNSGRLSAHINRKIGLANATWSGENSATPIF----------- 123
            GIDGEDLYFFTKLKRSTTN G LS H+NRKIGL N TWSGENSA+PI+           
Sbjct: 94  GGIDGEDLYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGY 153

Query: 124 -------NDQLQEHHGKWIMYEYSLHPNYLLCEGADPNYVLCRMRKNERAKRKL--EQGE 183
                  N+ L+EHHG+WIM+EYS+H  YL CEG D NYVLCRMRKNER KRKL   QGE
Sbjct: 154 RKRFRYENESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERVKRKLLEIQGE 213

Query: 184 LQQPKKKRITAPTISCNESPKIKASKRCFVGLEPAKQRVMTHDDITKALVVPEMTTNQDI 243
            +QP KKRI AP IS NE        RC   L+P  QR  T + I    + P        
Sbjct: 214 AKQPNKKRIKAPHISDNE--------RC-DELQPIDQRATTCETIYNLDIRP-------- 273

Query: 244 SIVVNVSDMTTNQDISVVADVPDMTTNQDNIDLLDMPLILTHESTSFGIKD-VPCAFTND 287
                  DM T+QDISVV  VP+MTTNQDN           +E+TS GI+D VPC   +D
Sbjct: 274 -------DMNTHQDISVVDRVPNMTTNQDN----------RNENTSLGIEDYVPCMPADD 303

The following BLAST results are available for this feature:

BLAST of LsiUNG000880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of LsiUNG000880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFJ5_CUCSA	1.2e-93	61.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1	[more]
A0A0A0KXM1_CUCSA	3.2e-91	59.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1	[more]
A0A0A0M0I5_CUCSA	3.7e-87	59.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1	[more]
A0A061FS95_THECC	4.7e-26	43.53	Transcription factor-like protein OS=Theobroma cacao GN=TCM_044667 PE=4 SV=1	[more]
A0A061FR05_THECC	4.9e-23	42.35	Transcription factor-like protein OS=Theobroma cacao GN=TCM_044639 PE=4 SV=1	[more]

BLAST of LsiUNG000880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of LsiUNG000880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688961\|ref\|XP_011652873.1\|	1.7e-93	61.09	PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus]	[more]
gi\|449448878\|ref\|XP_004142192.1\|	4.6e-91	59.06	PREDICTED: NAC transcription factor 29-like [Cucumis sativus]	[more]
gi\|659131362\|ref\|XP_008465646.1\|	2.3e-90	57.55	PREDICTED: NAC domain-containing protein 72-like [Cucumis melo]	[more]
gi\|659085698\|ref\|XP_008443554.1\|	1.1e-87	56.29	PREDICTED: protein SOMBRERO-like [Cucumis melo]	[more]
gi\|700211551\|gb\|KGN66647.1\|	5.3e-87	59.21	hypothetical protein Csa_1G652300 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003441	NAC-dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG000880.1	LsiUNG000880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 16..130 score: 1.
IPR003441	NAC domain	PROFILE	PS51005	NAC	coord: 14..152 score: 14
IPR003441	NAC domain	unknown	SSF101941	NAC domain	coord: 12..151 score: 1.44
None	No IPR available	PANTHER	PTHR31719	FAMILY NOT NAMED	coord: 16..158 score: 2.4
None	No IPR available	PANTHER	PTHR31719:SF10	SUBFAMILY NOT NAMED	coord: 16..158 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
LsiUNG000880	Cla002217	Watermelon (97103) v1	lsiwmB003
LsiUNG000880	Cla002680	Watermelon (97103) v1	lsiwmB004
LsiUNG000880	ClCG07G002360	Watermelon (Charleston Gray)	lsiwcgB005
LsiUNG000880	Cla97C07G130630	Watermelon (97103) v2	lsiwmbB004
LsiUNG000880	Cp4.1LG15g01740	Cucurbita pepo (Zucchini)	cpelsiB191

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
LsiUNG000880	Cucumber (Gy14) v2	cgyblsiB135
LsiUNG000880	Melon (DHL92) v3.6.1	lsimedB003
LsiUNG000880	Silver-seed gourd	carlsiB711
LsiUNG000880	Cucumber (Chinese Long) v3	cuclsiB162
LsiUNG000880	Wax gourd	lsiwgoB003
LsiUNG000880	Cucurbita maxima (Rimu)	cmalsiB528
LsiUNG000880	Cucumber (Gy14) v1	cgylsiB239
LsiUNG000880	Cucurbita maxima (Rimu)	cmalsiB463
LsiUNG000880	Cucurbita moschata (Rifu)	cmolsiB448
LsiUNG000880	Cucurbita moschata (Rifu)	cmolsiB513
LsiUNG000880	Cucurbita pepo (Zucchini)	cpelsiB577
LsiUNG000880	Wild cucumber (PI 183967)	cpilsiB148
LsiUNG000880	Cucumber (Chinese Long) v2	culsiB149
LsiUNG000880	Melon (DHL92) v3.5.1	lsimeB003