LsiUNG000800 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsiUNG000800
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr00 : 2456020 .. 2460426 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGTAAACCTATTCTGTTTAGTTAAGACTCTGGATGCCAGTAAATGTTATGATTCTTCCTTTAAGGTTTACAAATGGATGATTTTCATTTTACTCCTAAAGTTATCATCCAGCATCTTATGTCCAACAATTAGCTCTAAAGTCTTATACCTAGAAATTATTGTTGTCACCATAATGCGAGATAAAATGCGGGAGAATGTGACAAAGTCACCCTTCTTTCAAGTTGTCTTTAATGAATTGATGGTTGGTGAATGTATCGAGCAGGTGGGAAGGATTTCGTTTTATGCAAAAGTTACATTCACTTGGGGCCTCCTTGAAATAGGCCTTGAAATCTTGGAATGTATGGGGATATTAGGATCAAGAAGCAGGAAGGTTCCAAAGCAGCAAGAGATCTTGAGGAAGGTTAAGTTTCTAGATAGGCTTGAAAAGGAGGCCTCTCTTGCAGAGGTTTTCGAAGATGAGCGAGCCTATCTAAAGGCAGAATTTGGAGAGTTTGTTACTAAAGGGGTGACAAGTTGGAGGCAAAGGGCCAGAGTGAGGTGGGTAGGAAGAATTGTTAGTGGATTGTGGAAGGAGTAAGAATGTCGTAGGCCCTTTAAGGGCTGTTCGGAATCAGGTTTAGAATGAGATTGAGTTGTTATGTAATCAAAAACCCAAGTTTAGATTAAGTGTTTTGGGCCCGATTTGTAATACCAAACTTATTCCTTCCCACAGTTTTAATCTCAACCCTCTTTTCTACCGTTTTCACGCTTCATGATTCCATTTCCATTCCGCCTTCGATTTCTCACACATCCCAACACTCTTCTGATTCTCAATAATCATGATTACATTCCAGCCTCCTAAACAGCCCCTTAGAGAACGATAATGGAGAGACATTATGAAGGAACAGAGATTGAGGCGATAGTTTCCTTTTTTTTCCTCTCGCTCTACGCTTCAGTAGTTCTTTTAGACCTTTCATAGAGGGTTTAGATTGGAGTCCTATTGCAGACACCGGACAATGACAAGGCTGAGTTGAACTCTTCCTAATGATTTTGGGTTTTGAGAGGAATAAAGTTCCTCCCTTTAGTCTTATTGGCTTTCCCTTGTTGTGGAAGGTTAAAATTTCCAAGAAGGTGAAATTCTTTGTTTGGCAGATCTTTTGCAGGAGAATTGCCACGTTGGACCCTGTTTCAAGGAATTTATCTTGTATGATTGGGCCAAAGTGCCCTATTCTCTTTGTAAGAGTGTGGCTGAGGATTCAACCACCCTTTTGGGTGTGATTTTTGTCATCTCTATATGGAGATTGGTTTTTGTAGTTTATGGTGGCTTGAGCAATTTTGTGGGGCCTTGTAACAATAGACTTCTTGAAAGGTTGAAAGGTTGAAGAGAGGATGTGCAGGCTTTTCTTCTTAGGTTCCATTTCTCACTTTAGGCCATGGCTTTTAATGCTTTTTGTAATTTTCCTTCCAAGTGTCATTTTTGTTTTAGTTTGGCTTCTTTTGTTTGAGGTTTTTTTTTAATATATTTTTTATGCCCTCTGTATTTTATCATAAGAATTTCATCAACAAAATGTGTGGGGGAGAATATTTTCTTATCTATACACTAGAGTTGCATCCGTGTCCTAAACTAATAATAGTAATGAGTAAAATTACTATAGAAAACACAAGACTACTAAACTTTTAGGGAGCATTTGAAGCTTAAGTTGGTTATAGTCTATGTTTGGAGTGTAGACTGTTTCAGTCTAGGTTATAATAGTTTGTGTCTGAGATGCAAATTATTTTAGTTTAGATGAGAAATAGTAAACACGGTAACAAAGAGAGAAAAAGATAAATAAGTAAGAAATAGCAAACATTGTAACAAAGAGGGATTTGAAATAGTAATACTACAGTTAATTATAGGTTATAATAATTGGAAATCAATTATTTTAATTGGAACCCATAGCCTAAACACCCCCATACCTAACCAACTGGAATAAAGCAATGTCTCTCTACCTGTTAGATATTGTGTTGTCGGGCCTTTGTTTTCTTCTTTATAAAACGTTTCGTGCCTTTGACAACCAAGGTTCGAAATATCGATGTCGATGGAAATATTGACGTCTCGATTTTATGGAAATATCAATATCGATGGAAATTTCGGGAAAATTTATGGAAATTTATAGAAATTGTTATAATTAATTAATGAAACTTTGATAATGGCTTAATTAAACTATAACTGACTATTTTTAATCATAATTTCTATAAATTAAAACAATATTTAGATGTCTATTGTAAATGTCTGAGTAACGGTTGATACGAGAGCAGAATTTTAAAAAAGAAATGAAAAAATAATTACAAAATTTAATGAAAAAAGTTTGATTAAGCTTAAAAATAAATATAGATTATTTTTTTTGGGGGGGGGGTTTCAAATTCAATTTCTTTATAAATGAAAGTTTTGGGTGGAAAATAAATCTAAAAATTGAGAAAAGTTGGAAATTAAAAAAAAATAGCACATAAAAAATGCTTAATCTTTTGTTCAAAATGACATTGGTGTATGAAACTATTGAATTGTGTATAATCAGACCATAAAATTGAAAATTTTGAACTAAGCTAACATAGTTAATCAGAAAAAAAAAATTGAAAATTTCTCGAAATGTCAAAATTTCTCAAATTTTTTTCGAACTCTCGAAATTTCGTCAAAATGGGGAGAATCGAAATATTCTTGAAATCTCAAAAATTTTCGAAATTTTCTCAAAATTTCGTCGAACTTGGGAGAAAAACAAAATTTTCCTCCAACAAGATTTTGAGACGTTCGAAATCTTAAAATTTTGAGATTTCGGAAAATTTTCTCTTTGCTGACAACTCACTGTGTAATAATTAAAACATGAAGGACGTGTTGCATCTTTGTGGGGATAGGAATCAGTTGGGTAACTTTTCAGAATTTGTGGTCATGGAAGCAAGTTTTTTAGCTACCTACCCCCGGTTTAGAATACCATGTGTTTCTCTTGCTCTTGCTCTTCCTCCTTTGTCCTTCTCTCTCCCTTTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTGTTGAATTATAAGTTTAGTCTAGATTTTGATCTATTTGGTCTCTGAACTTTTAAAATATCTAATAAGTCTATGAGCTTTCAATTTTGTGTCTAATAAGTTCTTGACAAATTAAAAATTATTCTAACTATTAAACATATATTTAAGTTTTATATCTAATGGAATAATGAACTTTCAATTTTATGTCTGGTAGATCCGTAAGTTATTAGACTAAATTTGTATTTCTAAAAGTTCTAAGATCAAACAGAAACAAATTTCAAAGTTCAGGACTAAGAGGGCGTTTGAGGCACTAACTTGGTTATTATAGTCTATGGGCTATAATAGTTTGTAAGTTGTTATAGTCTGTGTTTGGGGTGCAGACTATTTTAGTCTAGGTAGGAAATAGTAAACATTGTAGCAAAGTGGGAAAGAAAGGATGTGTAGGAAGTAGTAAACATTGTAGCAAAAAATGACTTGAAATAGTAATATTGTAGTTAATTGTAAGTTATAATAGTTGAAAACACCAACTATTATAATTGGTGCTCCAAATGTGGAGTGGCTATAATAGCCCACTCTACCAACTTCAAGTTGGTGCCCCCAAACACGCCCTAGACGTGTAATTTAATGTCTTTTTTTTTCTCTTCTCGTCGTGTGTGTGTGCAAATGCACTTTGTCTCGCTATGGCTTAGTAGTTCGTTGTTTTTTAGTGAATGCCAGCTTTACAAAATCCTACACCGTAACTCAACCTTTTGTCGTCATTATAATATTCTTTAAGGGGGTGTTTGGAGTAAACAGTGGAATAGTGAAGAGTAAAGAGTTATGAAGTCTAGGGAGTTATGAACTCCTGGGAGCTTGTAAGGAGTTGATAAGATATAAAATTAATGGTTTTTAGTAGTGGGACTCACCTACTCATTGAGCCAAACAAGGAGTGGAGTTCACAACTCCTATTTTCGAACTCCCTACTCCACAATTCCTTAGGCCAAACACACCCTAAAAGATTGCAAAATGCTACTTAATTTATTTTATTTATTTATTTATTTTGGTTGGTTGTAACTTGTAATCCATTATGCAGTCTAAAAGATCAAAGCGGAAACTGAGACAGCCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGTTAGATCATTTGGTATAATCCTCCTCTTGTGCTAGTGTACGGATTGTAGCTTCAATATCAGCATTCAGCTAGCTTCTCCTTTTTCTTCCTTTGGATTTAAAATTCAGAGCCTTAGAACAAACTAAGATGGAGAATAATTATTTCTTTGTTATATGTAGTTGATGATAGAGATGATTGTGATTTAAAACGAGGTGTTACCTTTTTATTGTCATCATGTGTTAATCTTAGGATGTGTTTGGT

mRNA sequence

ATGCCCGTAAACCTATTCTGTTTAGTTAAGACTCTGGATGCCAGTAAATGTTATGATTCTTCCTTTAAGGTTTACAAATGGATGATTTTCATTTTACTCCTAAAGTTATCATCCAGCATCTTATGTCCAACAATTAGCTCTAAAGTCTTATACCTAGAAATTATTGTTGTCACCATAATGCGAGATAAAATGCGGGAGAATGTGACAAAGTCACCCTTCTTTCAAGTTGTCTTTAATGAATTGATGGTTGGTGAATGTATCGAGCAGGTGGGAAGGATTTCGTTTTATGCAAAAGTTACATTCACTTGGGGCCTCCTTGAAATAGGCCTTGAAATCTTGGAATGTATGGGGATATTAGGATCAAGAAGCAGGAAGGTTCCAAAGCAGCAAGAGATCTTGAGGAAGGTTAAGTTTCTAGATAGGCTTGAAAAGGAGGCCTCTCTTGCAGAGGTTTTCGAAGATGAGCGAGCCTATCTAAAGGCAGAATTTGGAGAGTTTGTTACTAAAGGGGTGACAAGTTGGAGGCAAAGGGCCAGATCTAAAAGATCAAAGCGGAAACTGAGACAGCCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGTTAGATCATTTGGTATAATCCTCCTCTTGTGCTAGTGTACGGATTGTAGCTTCAATATCAGCATTCAGCTAGCTTCTCCTTTTTCTTCCTTTGGATTTAAAATTCAGAGCCTTAGAACAAACTAAGATGGAGAATAATTATTTCTTTGTTATATGTAGTTGATGATAGAGATGATTGTGATTTAAAACGAGGTGTTACCTTTTTATTGTCATCATGTGTTAATCTTAGGATGTGTTTGGT

Coding sequence (CDS)

ATGCCCGTAAACCTATTCTGTTTAGTTAAGACTCTGGATGCCAGTAAATGTTATGATTCTTCCTTTAAGGTTTACAAATGGATGATTTTCATTTTACTCCTAAAGTTATCATCCAGCATCTTATGTCCAACAATTAGCTCTAAAGTCTTATACCTAGAAATTATTGTTGTCACCATAATGCGAGATAAAATGCGGGAGAATGTGACAAAGTCACCCTTCTTTCAAGTTGTCTTTAATGAATTGATGGTTGGTGAATGTATCGAGCAGGTGGGAAGGATTTCGTTTTATGCAAAAGTTACATTCACTTGGGGCCTCCTTGAAATAGGCCTTGAAATCTTGGAATGTATGGGGATATTAGGATCAAGAAGCAGGAAGGTTCCAAAGCAGCAAGAGATCTTGAGGAAGGTTAAGTTTCTAGATAGGCTTGAAAAGGAGGCCTCTCTTGCAGAGGTTTTCGAAGATGAGCGAGCCTATCTAAAGGCAGAATTTGGAGAGTTTGTTACTAAAGGGGTGACAAGTTGGAGGCAAAGGGCCAGATCTAAAAGATCAAAGCGGAAACTGAGACAGCCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGTTAG

Protein sequence

MPVNLFCLVKTLDASKCYDSSFKVYKWMIFILLLKLSSSILCPTISSKVLYLEIIVVTIMRDKMRENVTKSPFFQVVFNELMVGECIEQVGRISFYAKVTFTWGLLEIGLEILECMGILGSRSRKVPKQQEILRKVKFLDRLEKEASLAEVFEDERAYLKAEFGEFVTKGVTSWRQRARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG
Homology
[Close]
BLAST of LsiUNG000800 vs. TAIR10
Match: AT5G45590.1 (AT5G45590.1 Ribosomal protein L35)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 179 RSKRSKRKLRQPAIVPLAYAKVMKKLNFC 208
           +SK+SKR+LRQP +VP AYAKVMKKLNFC
Sbjct: 144 KSKKSKRRLRQPGLVPPAYAKVMKKLNFC 172

The following BLAST results are available for this feature:
BLAST of LsiUNG000800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of LsiUNG000800 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of LsiUNG000800 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G45590.11.2e-0679.31 Ribosomal protein L35[more]
BLAST of LsiUNG000800 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
LsiUNG000800.1LsiUNG000800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
LsiUNG000800CsaV3_3G030390Cucumber (Chinese Long) v3cuclsiB162
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
LsiUNG000800Watermelon (97103) v2lsiwmbB004
LsiUNG000800Wax gourdlsiwgoB003
LsiUNG000800Cucurbita maxima (Rimu)cmalsiB528
LsiUNG000800Cucumber (Gy14) v1cgylsiB239
LsiUNG000800Cucurbita maxima (Rimu)cmalsiB463
LsiUNG000800Cucurbita moschata (Rifu)cmolsiB448
LsiUNG000800Cucurbita moschata (Rifu)cmolsiB513
LsiUNG000800Cucurbita pepo (Zucchini)cpelsiB191
LsiUNG000800Cucurbita pepo (Zucchini)cpelsiB577
LsiUNG000800Wild cucumber (PI 183967)cpilsiB148
LsiUNG000800Cucumber (Chinese Long) v2culsiB149
LsiUNG000800Melon (DHL92) v3.5.1lsimeB003
LsiUNG000800Watermelon (Charleston Gray)lsiwcgB005
LsiUNG000800Watermelon (97103) v1lsiwmB004
LsiUNG000800Cucumber (Gy14) v2cgyblsiB135
LsiUNG000800Melon (DHL92) v3.6.1lsimedB003
LsiUNG000800Silver-seed gourdcarlsiB711