LsiUNG000350 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	LsiUNG000350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr00 : 592076 .. 593506 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCATAAACTTTCTTCTTTTGTGTTCTTTCTTTTGTTAGGTATTGGAGTTTCTTTTGCAGCTAGAACTCTTTTAACTTATGGTGATGGAGAACCGGTGAATATTCCTGCATATGCTTATGGTGCAGGGGGTGGTAGTGGTGGTGGATATGGTTCTCTTGGTGGTCATGGAGGTGATGGAGGATATGGAGGTGGAGGTGGTACTAGCTATAGTTCTGTAGGACAATATGGTGTTGGAAGCTATGGAAGTGGAAGTGGAAATGGAGCTGGAGGTGGTGAAGGATATGGTCCTAGTGGTGGGCATGGTGGTGGAGGAGGTGGTGGGAGTGGCGGGGGTTCTACTTATGGCCATGGTGGTTCTGCTTATGGAGGTGGTGGAGGAGGTGGTGAAGGAGGTGGTTATGGTCCTGGTGCTGGTGGATATGGAGGAGGCGGTGGCAATGGTGGTGGAGCGGGCTATGGTCCTAGTGGAGGTGGATATGGTCCTGGAGGAGGTGCAGGGCATGGTGGAAGAGGTGGTGCTAGCTATGGTCCTGGAGGTGGAGGCTATGGAGGAGGTGGTGGAAATGGGGGCGGGACAGGATACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGGGGTGGGGCAGGATACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGCGGTGGGGCTGGGTACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGCGGTGGGGCTGGGTACGGTCATGAAGGTGCTGGATATGGAGGGGGTGGTGGAAATGGAGGTGGGGCTGGGTACGGTCATGACGGTGCTGGGTACGGTGGAGGCGGGGGAAATGGTGGTGGGGCAGGTTACGGTCATGAAGGTGCTGGGTACGGTGGAGGTGGTGGAAATGGCGGTGGGGGAGGTTACGGTCATGAAGGTGCTGGATACGGTGGGGGTGGTGGAAATGGCGGCGGGGCAGGGTATGGTCATGAAGGCACTGTTGGAAATGGTGATGGGGTCGAGTATGGTTCTGGTGGTGGAGGAGGAAATGGAGGTGGGGCTGGTTATGGCGGTCCTGGTGGTTCTGGATATGGCGCTGGAGGAGGTGAAGGAGGTGGTTCAGGGTATGGTGGAGAACATGGGACAGGCTATGGTGGTGGCGGTGGAAATGGTGGTGGTGGTGGAGCAGGAAATGGCTCAGGAGGAGAATATGGCTCCGGTTATGGAAGCGGAGCAGGTGGAGGACATGGTGCAGGAGGAGGAAGTAGTGGAGGAGGAAGTGGAGGAGGTGGTGGAGGAGGATCGGGATATGGTGGAGGAAGTGCACATGGAGGCAGTGCATATGGTGGTCATGAAGGAGACAGTGGATATGGAGGAGGAGGTGGTAGCGGCCAAGGCGGTGGCCATGGTGGATATGCACCTTGA

mRNA sequence

ATGGCTTCTCATAAACTTTCTTCTTTTGTGTTCTTTCTTTTGTTAGGTATTGGAGTTTCTTTTGCAGCTAGAACTCTTTTAACTTATGGTGATGGAGAACCGGTGAATATTCCTGCATATGCTTATGGTGCAGGGGGTGGTAGTGGTGGTGGATATGGTTCTCTTGGTGGTCATGGAGGTGATGGAGGATATGGAGGTGGAGGTGGTACTAGCTATAGTTCTGTAGGACAATATGGTGTTGGAAGCTATGGAAGTGGAAGTGGAAATGGAGCTGGAGGTGGTGAAGGATATGGTCCTAGTGGTGGGCATGGTGGTGGAGGAGGTGGTGGGAGTGGCGGGGGTTCTACTTATGGCCATGGTGGTTCTGCTTATGGAGGTGGTGGAGGAGGTGGTGAAGGAGGTGGTTATGGTCCTGGTGCTGGTGGATATGGAGGAGGCGGTGGCAATGGTGGTGGAGCGGGCTATGGTCCTAGTGGAGGTGGATATGGTCCTGGAGGAGGTGCAGGGCATGGTGGAAGAGGTGGTGCTAGCTATGGTCCTGGAGGTGGAGGCTATGGAGGAGGTGGTGGAAATGGGGGCGGGACAGGATACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGGGGTGGGGCAGGATACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGCGGTGGGGCTGGGTACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGCGGTGGGGCTGGGTACGGTCATGAAGGTGCTGGATATGGAGGGGGTGGTGGAAATGGAGGTGGGGCTGGGTACGGTCATGACGGTGCTGGGTACGGTGGAGGCGGGGGAAATGGTGGTGGGGCAGGTTACGGTCATGAAGGTGCTGGGTACGGTGGAGGTGGTGGAAATGGCGGTGGGGGAGGTTACGGTCATGAAGGTGCTGGATACGGTGGGGGTGGTGGAAATGGCGGCGGGGCAGGGTATGGTCATGAAGGCACTGTTGGAAATGGTGATGGGGTCGAGTATGGTTCTGGTGGTGGAGGAGGAAATGGAGGTGGGGCTGGTTATGGCGGTCCTGGTGGTTCTGGATATGGCGCTGGAGGAGGTGAAGGAGGTGGTTCAGGGTATGGTGGAGAACATGGGACAGGCTATGGTGGTGGCGGTGGAAATGGTGGTGGTGGTGGAGCAGGAAATGGCTCAGGAGGAGAATATGGCTCCGGTTATGGAAGCGGAGCAGGTGGAGGACATGGTGCAGGAGGAGGAAGTAGTGGAGGAGGAAGTGGAGGAGGTGGTGGAGGAGGATCGGGATATGGTGGAGGAAGTGCACATGGAGGCAGTGCATATGGTGGTCATGAAGGAGACAGTGGATATGGAGGAGGAGGTGGTAGCGGCCAAGGCGGTGGCCATGGTGGATATGCACCTTGA

Coding sequence (CDS)

ATGGCTTCTCATAAACTTTCTTCTTTTGTGTTCTTTCTTTTGTTAGGTATTGGAGTTTCTTTTGCAGCTAGAACTCTTTTAACTTATGGTGATGGAGAACCGGTGAATATTCCTGCATATGCTTATGGTGCAGGGGGTGGTAGTGGTGGTGGATATGGTTCTCTTGGTGGTCATGGAGGTGATGGAGGATATGGAGGTGGAGGTGGTACTAGCTATAGTTCTGTAGGACAATATGGTGTTGGAAGCTATGGAAGTGGAAGTGGAAATGGAGCTGGAGGTGGTGAAGGATATGGTCCTAGTGGTGGGCATGGTGGTGGAGGAGGTGGTGGGAGTGGCGGGGGTTCTACTTATGGCCATGGTGGTTCTGCTTATGGAGGTGGTGGAGGAGGTGGTGAAGGAGGTGGTTATGGTCCTGGTGCTGGTGGATATGGAGGAGGCGGTGGCAATGGTGGTGGAGCGGGCTATGGTCCTAGTGGAGGTGGATATGGTCCTGGAGGAGGTGCAGGGCATGGTGGAAGAGGTGGTGCTAGCTATGGTCCTGGAGGTGGAGGCTATGGAGGAGGTGGTGGAAATGGGGGCGGGACAGGATACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGGGGTGGGGCAGGATACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGCGGTGGGGCTGGGTACGGTCATGAAGGTGCAGGATATGGAGGGGGTGGTGGAAATGGCGGTGGGGCTGGGTACGGTCATGAAGGTGCTGGATATGGAGGGGGTGGTGGAAATGGAGGTGGGGCTGGGTACGGTCATGACGGTGCTGGGTACGGTGGAGGCGGGGGAAATGGTGGTGGGGCAGGTTACGGTCATGAAGGTGCTGGGTACGGTGGAGGTGGTGGAAATGGCGGTGGGGGAGGTTACGGTCATGAAGGTGCTGGATACGGTGGGGGTGGTGGAAATGGCGGCGGGGCAGGGTATGGTCATGAAGGCACTGTTGGAAATGGTGATGGGGTCGAGTATGGTTCTGGTGGTGGAGGAGGAAATGGAGGTGGGGCTGGTTATGGCGGTCCTGGTGGTTCTGGATATGGCGCTGGAGGAGGTGAAGGAGGTGGTTCAGGGTATGGTGGAGAACATGGGACAGGCTATGGTGGTGGCGGTGGAAATGGTGGTGGTGGTGGAGCAGGAAATGGCTCAGGAGGAGAATATGGCTCCGGTTATGGAAGCGGAGCAGGTGGAGGACATGGTGCAGGAGGAGGAAGTAGTGGAGGAGGAAGTGGAGGAGGTGGTGGAGGAGGATCGGGATATGGTGGAGGAAGTGCACATGGAGGCAGTGCATATGGTGGTCATGAAGGAGACAGTGGATATGGAGGAGGAGGTGGTAGCGGCCAAGGCGGTGGCCATGGTGGATATGCACCTTGA

Protein sequence

MASHKLSSFVFFLLLGIGVSFAARTLLTYGDGEPVNIPAYAYGAGGGSGGGYGSLGGHGGDGGYGGGGGTSYSSVGQYGVGSYGSGSGNGAGGGEGYGPSGGHGGGGGGGSGGGSTYGHGGSAYGGGGGGGEGGGYGPGAGGYGGGGGNGGGAGYGPSGGGYGPGGGAGHGGRGGASYGPGGGGYGGGGGNGGGTGYGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAGYGHDGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGGGYGHEGAGYGGGGGNGGGAGYGHEGTVGNGDGVEYGSGGGGGNGGGAGYGGPGGSGYGAGGGEGGGSGYGGEHGTGYGGGGGNGGGGGAGNGSGGEYGSGYGSGAGGGHGAGGGSSGGGSGGGGGGGSGYGGGSAHGGSAYGGHEGDSGYGGGGGSGQGGGHGGYAP

Homology

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BLAST of LsiUNG000350 vs. TrEMBL
Match: A0A0A0LH77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902220 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 331/484 (68.39%), Postives = 344/484 (71.07%), Query Frame = 1


Query: 1   MASHKLSSFV-FFLLLGIGVSFAARTLLTYGDGEPVNIPAYAYGAG----GGSGGGYGSL 60
           MASHK SSFV FFLLLGIGVS+AARTLLTYG G PVNIPA+AYGAG    GGSGGGYG L
Sbjct: 1   MASHKFSSFVLFFLLLGIGVSYAARTLLTYGGG-PVNIPAFAYGAGNGGGGGSGGGYGPL 60

Query: 61  GGHGGDGGYGGGGGTSYSSVG-QYGVGSYGSGSGNGAGGGEGYGPSGGHGGGGGGGSGGG 120
           GG  G GGYG GGG SYSSVG QYGVG YGSG G G+GGGEGYGPSGG+GGGGGGGSGGG
Sbjct: 61  GG--GGGGYGSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGG 120

Query: 121 STYGHGGSAYGGGGGGGEGGGYGPGAGGYGGGGGNGGGAGYGPSGGGYGPGGGAGHGGRG 180
           S YGHGGSAYGGGGG                   +GGG GYGP GGGYG GGG G    G
Sbjct: 121 SAYGHGGSAYGGGGG-------------------SGGGGGYGPGGGGYGGGGGNG----G 180

Query: 181 GASYGPGGGGYGGGGGNGGGTGYGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAG 240
           GASYGPG G           +GYG  G GYGGGGG+GGG GYG  G GYGGGGGNGGGAG
Sbjct: 181 GASYGPGEG-----------SGYG--GVGYGGGGGSGGGVGYGPGGGGYGGGGGNGGGAG 240

Query: 241 YGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAGYGH-DGAGYGG-GGGNGGGAGY 300
           YG  GAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGA YG  +G+GYGG GGGNGGG   
Sbjct: 241 YGLGGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGASYGPGEGSGYGGVGGGNGGG--- 300

Query: 301 GHEGAGYGGGGGNGGGGGYGHEGAGYGGGGGNGGGAGYGHEGTVGNGDGVEYGSGGGGGN 360
            HE  GYGG GGNGG     HE  GYGG GGN GGAGYG E                   
Sbjct: 301 -HESGGYGGNGGNGGS----HESGGYGGSGGNSGGAGYGGEH------------------ 360

Query: 361 GGGAGYGGPGGSGYGAGGGEGGGSGYGGEHGTGYGGGGGNGGGGGAGNGSGGEYGSGYGS 420
             GAGYGG                          GGG G GGGGGAG+GSGGEYGSGYGS
Sbjct: 361 --GAGYGG--------------------------GGGNGGGGGGGAGSGSGGEYGSGYGS 390

Query: 421 GAGGGHGAGGGSSGGGSGGGGGGGSGYGGGSAHGGSAYGGHEGDSGYGGGGGSGQGGGHG 477
           GAGGGHGAGGG++GGGSGGGGGGGSGYGGGSAHGG AYGGHE  +GYGGGGGSGQGGGHG
Sbjct: 421 GAGGGHGAGGGNNGGGSGGGGGGGSGYGGGSAHGG-AYGGHEEGNGYGGGGGSGQGGGHG 390

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BLAST of LsiUNG000350 vs. TrEMBL
Match: A0A169WK47_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_005637 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 285/476 (59.87%), Postives = 292/476 (61.34%), Query Frame = 1


Query: 39  AYAYGAGGGSGGGYGSLGGHGG--DGGYGGGGGTSYSSVGQYGVGSYGSGSGNGAGGGEG 98
           AY  G G G GGGYG+ G HGG   GG G GGG  Y + G++G G+YG G GNG GGG  
Sbjct: 271 AYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHG-GAYGGGGGNGGGGG-- 330

Query: 99  YGPSGGHGG--GGGGGSGGGSTYGHGGS---AYGGGGGGGEGGGYGPGA---GGYGGGGG 158
           YG  G HGG  GGGGG+GGG  YG GG    AYGGGGG G GGGYG G    G YGGGGG
Sbjct: 331 YGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGG 390

Query: 159 NGGGAGYGPSGGGYGPGGGAGHGGRGGASYGPGGGGYGGGGGNGGGTGYG---HEGAGYG 218
           NGGG       GGYG GG               GG YGGGGGNGGG GYG     G  YG
Sbjct: 391 NGGG-------GGYGAGG-------------EHGGAYGGGGGNGGGGGYGAGGEHGGAYG 450

Query: 219 GGGGNGGGAGYG---HEGAGYGGGGGNGGGAGYG---HEGAGYGGGGGNGGGAGYG---H 278
           GGGGNGGG GYG     G  YGGGGGNGGG GYG     G  YGGGGGNGGG GYG    
Sbjct: 451 GGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGE 510

Query: 279 EGAGYGGGGGNGGGAGYG---HDGAGYGGGGGNGGGAGY---GHEGAGYGGGGGNGGGGG 338
            G  YGGGGGNGGG GYG     G  YGGGGGNGGG GY   G  G  YGGGGGNGGGGG
Sbjct: 511 HGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGG 570

Query: 339 Y---GHEGAGYGGGGGNGGGAGYGHEGTVGNGDGVEYGSGGGGGNGGGAGYGGPGGSGYG 398
           Y   G  G  YGGGGGNGGG GYG     G   G  YG GGG G GGG G GG  G GYG
Sbjct: 571 YGAGGEHGGAYGGGGGNGGGGGYG----AGGEHGGAYGGGGGNGGGGGYGTGGEHGGGYG 630

Query: 399 AGGGEGGGSGYGGEHGTGYG-GGGGNGGGGGAGNGSGGEY--GSGYGSGAGGGHGAG--- 458
            GGG GGGSG     G GYG GG G GGGGG+G G GG Y  G GYG GAG G G G   
Sbjct: 631 GGGGAGGGSG-----GGGYGPGGHGGGGGGGSGGGGGGGYVPGGGYGGGAGSGSGGGYGT 690

Query: 459 GGSSGGGSGGGGGGGSGYGGGSAHG-GSAYGGHEGDSGYGGGGGSGQGGGHGGYAP 477
           GG  GGG G GGGGG GYG G  HG G   GG  G  GY GGGG G GGGHGGY P
Sbjct: 691 GGEHGGGGGHGGGGGGGYGPGGGHGSGGGEGGGAGGGGYAGGGGGGSGGGHGGYYP 714

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BLAST of LsiUNG000350 vs. NCBI nr
Match: gi|700205246|gb|KGN60379.1| (hypothetical protein Csa_3G902220 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 4.0e-65
Identity = 328/484 (67.77%), Postives = 341/484 (70.45%), Query Frame = 1


Query: 1   MASHKLSSFV-FFLLLGIGVSFAARTLLTYGDGEPVNIPAYAYGAG----GGSGGGYGSL 60
           MASHK SSFV FFLLLGIGVS+AARTLLTYG G PVNIPA+AYGAG    GGSGGGYG L
Sbjct: 1   MASHKFSSFVLFFLLLGIGVSYAARTLLTYGGG-PVNIPAFAYGAGNGGGGGSGGGYGPL 60

Query: 61  GGHGGDGGYGGGGGTSYSSVG-QYGVGSYGSGSGNGAGGGEGYGPSGGHGGGGGGGSGGG 120
           GG  G GGYG GGG SYSSVG QYGVG YGSG G G+GGGEGYGPSGG+GGGGGGGSGGG
Sbjct: 61  GG--GGGGYGSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGG 120

Query: 121 STYGHGGSAYGGGGGGGEGGGYGPGAGGYGGGGGNGGGAGYGPSGGGYGPGGGAGHGGRG 180
           S YGHGGSAYGGGGG                   +GGG GYGP GGGYG GGG G    G
Sbjct: 121 SAYGHGGSAYGGGGG-------------------SGGGGGYGPGGGGYGGGGGNG----G 180

Query: 181 GASYGPGGGGYGGGGGNGGGTGYGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAG 240
           GASYGPG G           +GYG  G GYGGGGG+GGG GYG  G GYGGGGGNGGGAG
Sbjct: 181 GASYGPGEG-----------SGYG--GVGYGGGGGSGGGVGYGPGGGGYGGGGGNGGGAG 240

Query: 241 YGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAGYG-HDGAGYGG-GGGNGGGAGY 300
           YG  GAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGA YG  +G+GYGG GGGNGG    
Sbjct: 241 YGLGGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGASYGPGEGSGYGGVGGGNGG---- 300

Query: 301 GHEGAGYGGGGGNGGGGGYGHEGAGYGGGGGNGGGAGYGHEGTVGNGDGVEYGSGGGGGN 360
           GHE  GYGG GGNGG     HE  GYGG GGN GGAGYG E                   
Sbjct: 301 GHESGGYGGNGGNGG----SHESGGYGGSGGNSGGAGYGGE------------------- 360

Query: 361 GGGAGYGGPGGSGYGAGGGEGGGSGYGGEHGTGYGGGGGNGGGGGAGNGSGGEYGSGYGS 420
             GAGYGG GG+G G GGG G GSG                          GEYGSGYGS
Sbjct: 361 -HGAGYGGGGGNGGGGGGGAGSGSG--------------------------GEYGSGYGS 390

Query: 421 GAGGGHGAGGGSSGGGSGGGGGGGSGYGGGSAHGGSAYGGHEGDSGYGGGGGSGQGGGHG 477
           GAGGGHGAGGG++GGGSGGGGGGGSGYGGGSAHGG AYGGHE  +GYGGGGGSGQGGGHG
Sbjct: 421 GAGGGHGAGGGNNGGGSGGGGGGGSGYGGGSAHGG-AYGGHEEGNGYGGGGGSGQGGGHG 390

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BLAST of LsiUNG000350 vs. NCBI nr
Match: gi|778687914|ref|XP_011652648.1| (PREDICTED: glycine-rich cell wall structural protein 1.8 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 2.1e-50
Identity = 302/483 (62.53%), Postives = 315/483 (65.22%), Query Frame = 1


Query: 1   MASHKLSSFV-FFLLLGIGVSFAARTLLTYGDGEPVNIPAYAYGAG----GGSGGGYGSL 60
           MASHK SSFV FFLLLGIGVS+AARTLLTYG G PVNIPA+AYGAG    GGSGGGYG L
Sbjct: 1   MASHKFSSFVLFFLLLGIGVSYAARTLLTYGGG-PVNIPAFAYGAGNGGGGGSGGGYGPL 60

Query: 61  GGHGGDGGYGGGGGTSYSSVG-QYGVGSYGSGSGNGAGGGEGYGPSGGHGGGGGGGSGGG 120
           GG  G GGYG GGG SYSSVG QYGVG YGSG G G+GGGEGYGPSGG+GGGGGGGSGGG
Sbjct: 61  GG--GGGGYGSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGG 120

Query: 121 STYGHGGSAYGGGGGGGEGGGYGPGAGGYGGGGGNGGGAGYGPSGGGYGPGGGAGHGGRG 180
           S YGHGGSAYGGGGG                   +GGG GYGP GGGYG GGG G    G
Sbjct: 121 SAYGHGGSAYGGGGG-------------------SGGGGGYGPGGGGYGGGGGNG----G 180

Query: 181 GASYGPGGGGYGGGGGNGGGTGYGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAG 240
           GASYGPG G           +GYG  G GYGGGGG+GGG GYG  G GYGGGGGNGGGAG
Sbjct: 181 GASYGPGEG-----------SGYG--GVGYGGGGGSGGGVGYGPGGGGYGGGGGNGGGAG 240

Query: 241 YGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNGGGAGYGHDGAGYGGGGGNGGGAGYGH 300
           YG  GAGYGGGGGNGGG    HE  GYGG GGNGGG    H+  GYGG GGNGG     H
Sbjct: 241 YGLGGAGYGGGGGNGGG----HESGGYGGSGGNGGG----HESGGYGGNGGNGGS----H 300

Query: 301 EGAGYGGGGGNGGGGGYGHE-GAGYGGGGGNGGGAGYGHEGTVGNGDGVEYGSGGGGGNG 360
           E  GYGG GGN GG GYG E GAGYGGGGGNGGG                      GG G
Sbjct: 301 ESGGYGGSGGNSGGAGYGGEHGAGYGGGGGNGGG----------------------GGGG 360

Query: 361 GGAGYGGPGGSGYGAGGGEGGGSGYGGEHGTGYGGGGGNGGGGGAGNGSGGEYGSGYGSG 420
            G+G GG  GSGYG+G G               GG                         
Sbjct: 361 AGSGSGGEYGSGYGSGAG---------------GG------------------------- 365

Query: 421 AGGGHGAGGGSSGGGSGGGGGGGSGYGGGSAHGGSAYGGHEGDSGYGGGGGSGQGGGHGG 477
               HGAGGG++GGGSGGGGGGGSGYGGGSAHGG AYGGHE  +GYGGGGGSGQGGGHGG
Sbjct: 421 ----HGAGGGNNGGGSGGGGGGGSGYGGGSAHGG-AYGGHEEGNGYGGGGGSGQGGGHGG 365

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BLAST of LsiUNG000350 vs. NCBI nr
Match: gi|1021047020|gb|KZN04800.1| (hypothetical protein DCAR_005637 [Daucus carota subsp. sativus])

HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 290/496 (58.47%), Postives = 301/496 (60.69%), Query Frame = 1


Query: 30  GDGEPVNIPAYAYGAGGGSGGGYGSLGGHGGDGGYGGGGGTS----YSSVGQYGVGSYGS 89
           G+GE         G GGG GGG G  GG  G GGYGGGGG      Y + G++G G+YG 
Sbjct: 172 GNGEGGGYGGGGAGGGGGHGGGNGGGGGEHGGGGYGGGGGNGGGGGYGTGGEHG-GAYGG 231

Query: 90  GSGNGAGGGEGYGPSGGHGG--GGGGGSGGGSTYGHGGS---AYGGGGGGGEGGGYGPGA 149
           G GNG GGG  YG  G HGG  GGGGG+GGG  YG GG    AYGGGGG G GGGYG G 
Sbjct: 232 GGGNGGGGG--YGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGG 291

Query: 150 ---GGYGGGGGNGGGAGYGPSGGGYGPGGGAGHGGRGGASYGPGGGGYGGGGGNGGGTGY 209
              G YGGGGGNGGG       GGYG GG               GG YGGGGGNGGG GY
Sbjct: 292 EHGGAYGGGGGNGGG-------GGYGAGG-------------EHGGAYGGGGGNGGGGGY 351

Query: 210 G---HEGAGYGGGGGNGGGAGYG---HEGAGYGGGGGNGGGAGYG---HEGAGYGGGGGN 269
           G     G  YGGGGGNGGG GYG     G  YGGGGGNGGG GYG     G  YGGGGGN
Sbjct: 352 GAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGN 411

Query: 270 GGGAGYG---HEGAGYGGGGGNGGGAGYG---HDGAGYGGGGGNGGGAGYG---HEGAGY 329
           GGG GYG     G  YGGGGGNGGG GYG     G  YGGGGGNGGG GYG     G  Y
Sbjct: 412 GGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAY 471

Query: 330 GGGGGNGGGGGYG---HEGAGYGGGGGNGGGAGYGHEGTVGNGDGVEYGSGGGGGNGGGA 389
           GGGGGNGGGGGYG     G  YGGGGGNGGG GYG     G   G  YG GGG G GGG 
Sbjct: 472 GGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYG----AGGEHGGAYGGGGGNGGGGGY 531

Query: 390 GYGGPGGSGYGAGGGEGGGSGYG--GEHGTGYGGGGGNGGGG--GAGNGSGGEYGSGYGS 449
           G GG  G  YG GGG GGG GYG  GEHG  YGGGGGNGGGG  GAG   GG YG G G+
Sbjct: 532 GAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGN 591

Query: 450 GAGGGHGAG---GGSSGGGSGGGGGG--------GSGYGGGSAHGGSAYGGHEGDSGYGG 477
           G GGG+GAG   GG+ GGG G GGGG        G GYGGG   GG + GG  G  G+GG
Sbjct: 592 GGGGGYGAGGEHGGAYGGGGGNGGGGGYGTGGEHGGGYGGGGGAGGGSGGGGYGPGGHGG 640

[Close]

BLAST of LsiUNG000350 vs. NCBI nr
Match: gi|645265635|ref|XP_008238243.1| (PREDICTED: LOW QUALITY PROTEIN: glycine-rich cell wall structural protein 1.8-like [Prunus mume])

HSP 1 Score: 74.7 bits (182), Expect = 4.8e-10
Identity = 157/291 (53.95%), Postives = 176/291 (60.48%), Query Frame = 1


Query: 1   MASHKLSSFVFFLLLGIGVSFAARTLLTYGDGEPVNIPAYAYGAGGGSGGGYGS------ 60
           M      SFVFF+LLGIG+  AARTLL Y   EPV++PA +YG G GSGGG GS      
Sbjct: 1   MTIQNTHSFVFFVLLGIGICSAARTLLHYE--EPVHVPAVSYGTGHGSGGGGGSGYGGGG 60

Query: 61  LGGHGGDGGYGGGGGTS----YSSVGQYGVGSYGSGSGNGAGGGEGYGPSGGHGGGGGGG 120
             G+GG GGYGGGGG      Y +VG++G   YG GSG G GGG  YG +GGHGGGGGGG
Sbjct: 61  AAGYGGAGGYGGGGGAGSGGGYGAVGEHGAAGYGGGSGGGEGGGVAYGGAGGHGGGGGGG 120

Query: 121 SGGGSTYGHGGSAYGGGGGGGEGGGYGPGAGGYGGGGGNGGGAGYGPSGGGYGPGGGAGH 180
           SGGG  YG GG                  AGGYG GGG GGGAGYG +GG +G       
Sbjct: 121 SGGGGAYGTGG------------------AGGYGSGGGEGGGAGYG-AGGEHGV------ 180

Query: 181 GGRGGASYGPGGGGYGGGGGNGGGTGY-GHEGAGYGGGGGNGGGAGY---GHEGAGYGGG 240
                      GGG GGG G GGG+GY G  G+GYGGG G G G GY   G  G GYGGG
Sbjct: 181 -----------GGGGGGGTGGGGGSGYAGEHGSGYGGGAGGGAGGGYGAGGEHGGGYGGG 240

Query: 241 GGNGGGAGYGH--EGAGYGGGGGNGGGAGY-GHEGAGYGGGGGNGGGAGYG 275
           GG+GGGAG G+   GA  GGGGG+GGG+GY G  G  Y GGGG G G G+G
Sbjct: 241 GGHGGGAGGGYVAGGASGGGGGGSGGGSGYGGAHGGAYRGGGGAGEGGGHG 253

[Close]

BLAST of LsiUNG000350 vs. NCBI nr
Match: gi|1009157810|ref|XP_015896953.1| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 8.5e-07
Identity = 169/293 (57.68%), Postives = 188/293 (64.16%), Query Frame = 1


Query: 1   MASHKLSSFVFFLLLGIGVSFAARTLLTYGDGEPVNIPAYA--YGAGGGSGGGYGSLGGH 60
           MAS KL + VFF+LLGIG+S AAR LL Y + EPV++  Y   +G GGG GGG G  GG 
Sbjct: 22  MASKKLLTCVFFVLLGIGISSAARALLHYEE-EPVHVIGYGGGHGIGGGGGGGNGGAGGG 81

Query: 61  GGDGGY---GGGGGTSYSSVGQYGVGSYGSGSGNGAGGGEGYGPSGGHGGGGGGGSGGGS 120
           GG GG    GGGGG  Y +VG YG G  G GSG G G G G G + G GGGGGGG+GGG 
Sbjct: 82  GGGGGGEGGGGGGGGGYGNVGGYGGGGAGHGSGGGGGSGYGGGDASGQGGGGGGGTGGG- 141

Query: 121 TYGHGGSAYGGGGGGGEGGGYGPGAGGYGGGGGNGGGAGYGPSGGGYGPGGGAGHGGRGG 180
             G GG+AYGGG            AGG+G G G GGG GYG  GGG G GGG+G+GG  G
Sbjct: 142 --GGGGTAYGGG------------AGGHGSGAGEGGGKGYGGGGGG-GGGGGSGYGGDHG 201

Query: 181 ASYGPG-----GGGYGGGGGNGGGTGYGHEGAGYGGGGGNGGGAGYGHEGAGYGGGGGNG 240
           A YG G     GGGYG GG +G G G G  G G+GGGGG G GAG  H G GYGGGGG G
Sbjct: 202 AGYGSGTGAGSGGGYGEGGDHGAGYG-GGGGGGHGGGGGEGYGAGGAH-GGGYGGGGGEG 261

Query: 241 GGAGYG-HEGAGYGGGG--GNGGGAGYGHEGAGYGGGGGNGGGAGYGHDGAGY 281
           GG+G G     GYGGGG  G+GGG GYG EGA +GGG G GGG G GH G GY
Sbjct: 262 GGSGGGAGRAGGYGGGGGAGSGGGGGYGGEGA-HGGGYGGGGGEGGGHGGGGY 294

The following BLAST results are available for this feature:

BLAST of LsiUNG000350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of LsiUNG000350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH77_CUCSA	1.9e-66	68.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902220 PE=4 SV=1	[more]
A0A169WK47_DAUCA	2.0e-15	59.87	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_005637 PE=4 SV=1	[more]

BLAST of LsiUNG000350 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of LsiUNG000350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205246\|gb\|KGN60379.1\|	4.0e-65	67.77	hypothetical protein Csa_3G902220 [Cucumis sativus]	[more]
gi\|778687914\|ref\|XP_011652648.1\|	2.1e-50	62.53	PREDICTED: glycine-rich cell wall structural protein 1.8 [Cucumis sativus]	[more]
gi\|1021047020\|gb\|KZN04800.1\|	5.9e-16	58.47	hypothetical protein DCAR_005637 [Daucus carota subsp. sativus]	[more]
gi\|645265635\|ref\|XP_008238243.1\|	4.8e-10	53.95	PREDICTED: LOW QUALITY PROTEIN: glycine-rich cell wall structural protein 1.8-li...	[more]
gi\|1009157810\|ref\|XP_015896953.1\|	8.5e-07	57.68	PREDICTED: glycine-rich cell wall structural protein 1.8-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG000350.1	LsiUNG000350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 126..141 score: 1.2E-10coord: 182..200 score: 1.2E-10coord: 6..22 score: 1.2E-10coord: 155..165 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
LsiUNG000350	Bhi05G000325	Wax gourd	lsiwgoB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
LsiUNG000350	Bottle gourd (USVL1VR-Ls)	lsilsiB000
LsiUNG000350	Cucumber (Gy14) v1	cgylsiB500
LsiUNG000350	Cucumber (Gy14) v1	cgylsiB525
LsiUNG000350	Cucurbita maxima (Rimu)	cmalsiB297
LsiUNG000350	Cucurbita maxima (Rimu)	cmalsiB462
LsiUNG000350	Cucurbita maxima (Rimu)	cmalsiB529
LsiUNG000350	Cucurbita maxima (Rimu)	cmalsiB740
LsiUNG000350	Cucurbita moschata (Rifu)	cmolsiB285
LsiUNG000350	Cucurbita moschata (Rifu)	cmolsiB447
LsiUNG000350	Cucurbita moschata (Rifu)	cmolsiB514
LsiUNG000350	Cucurbita moschata (Rifu)	cmolsiB732
LsiUNG000350	Cucurbita pepo (Zucchini)	cpelsiB162
LsiUNG000350	Cucurbita pepo (Zucchini)	cpelsiB190
LsiUNG000350	Cucurbita pepo (Zucchini)	cpelsiB576
LsiUNG000350	Cucurbita pepo (Zucchini)	cpelsiB695
LsiUNG000350	Wild cucumber (PI 183967)	cpilsiB146
LsiUNG000350	Wild cucumber (PI 183967)	cpilsiB147
LsiUNG000350	Cucumber (Chinese Long) v2	culsiB148
LsiUNG000350	Cucumber (Chinese Long) v2	culsiB147
LsiUNG000350	Melon (DHL92) v3.5.1	lsimeB002
LsiUNG000350	Melon (DHL92) v3.5.1	lsimeB004
LsiUNG000350	Watermelon (Charleston Gray)	lsiwcgB000
LsiUNG000350	Watermelon (Charleston Gray)	lsiwcgB001
LsiUNG000350	Watermelon (97103) v1	lsiwmB001
LsiUNG000350	Watermelon (97103) v1	lsiwmB002
LsiUNG000350	Cucumber (Gy14) v2	cgyblsiB133
LsiUNG000350	Cucumber (Gy14) v2	cgyblsiB134
LsiUNG000350	Melon (DHL92) v3.6.1	lsimedB002
LsiUNG000350	Melon (DHL92) v3.6.1	lsimedB004
LsiUNG000350	Silver-seed gourd	carlsiB450
LsiUNG000350	Silver-seed gourd	carlsiB712
LsiUNG000350	Silver-seed gourd	carlsiB880
LsiUNG000350	Silver-seed gourd	carlsiB887
LsiUNG000350	Cucumber (Chinese Long) v3	cuclsiB160
LsiUNG000350	Cucumber (Chinese Long) v3	cuclsiB161
LsiUNG000350	Watermelon (97103) v2	lsiwmbB002
LsiUNG000350	Watermelon (97103) v2	lsiwmbB005