Lsi11G015820 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G015820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc finger CCCH domain-containing protein 37
Location	chr11 : 24164636 .. 24166266 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAATGGAACGACACACTTCTTTGCAGCTCGCCCCCGTCTCCGGTCGGACCAATCTAGATAACACGCACTCTTTAGGGTTTGCTAGTATAGTTTAGTCTAGTCCTGTGCTTCTTTCAAGTTCTCTAGCGTCTGGGATAAAAAAAATGGCTAATCAGCTGCACGGTTACAACTCCGTCTACGGTGCGGCACCTGCCACTGCCACTGCCACTGCCACTGCCGCTCTATCTCTTCCCACCACATACTCGTCTTCCCGTTCCCTCTCCGACATCGTCTCCGGCCGTTATCTCCTGTCAGACTCGCTGTCCTCCGGCCTCTCCATTAAGCACTCTGTAACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGCCCTTATGTTATCGGCTGCCGATATTGTCCCAAGAACGTCGCATTTGGTCCCTCAATTCTCTTGGCCGAGTTCTGATGTTGCTGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGATGGTAAGTTTTATTCTTTGTTTATTCAAATCTCTTGGAAAATCACTTGCAAAATAATTACTTGAGTACATGGAGATTAGCTTTAAGCTTCACGAAAACGAGGCAGGATGAATATGTTCACTTTTGGTTTCCGAAAACATCACCGATGGGATACTTATAAGTTTTTATTCTTTTTACTGCTTTCATCTGACCACCAAATGGCATTCGAGATCATGGGGCTTTGGTTTGGCTTCAGTGCTTCGATTCGTGCTGTTCACTGTCTTTTTCGCTATTATATATATATATATATATATATCTTTGGCATATTGGACGAACACCAACCCAAACAATAGTTCAATACAGGTAGGAAAAGATAATAGTCCTCATTCTTTTACGTTCTCACTGTTATGGACAGTGGGAGTTCCATATTGTTTTCGACTTTTCGTACCAAAGTATTTTATACATAAGCCATCTTTCTTCTCTGGAGGCTGTAACTAGGATATTATAAATCTCTTGTGATTCATGCACGCCCACTATGTCATATACATAATTTTATGTATGGGGTTGACGTAATGGTTCGTTTTCATCCTGCTGCCTCTAAGTTGCACCACAACACTATGAAGCAGTCTTAAATTGATATGATTTTTTTGCTATTTTTATATTTAATTCAAGTGCAAAGGGCCTAAATTCTATAAAACTTCATCCAGACTGTTTATTTATATGATATATATTTTGAAAATGTTATATTTTACATAATCTACTATATTTAATTTCTAAATCTGTACAGCCGAAAGAGTAGTTGTAAAAATACTTATATGGTAACGTACATGTTTGTCTTTCTTGTACATATTTGTCTACTATGTACAATAGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCGCAGAGGCCTGGGGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTGACTGTTTTCTGCTATCTTTTATACCTATAA

mRNA sequence

CCAAAATGGAACGACACACTTCTTTGCAGCTCGCCCCCGTCTCCGGTCGGACCAATCTAGATAACACGCACTCTTTAGGGTTTGCTAGTATAGTTTAGTCTAGTCCTGTGCTTCTTTCAAGTTCTCTAGCGTCTGGGATAAAAAAAATGGCTAATCAGCTGCACGGTTACAACTCCGTCTACGGTGCGGCACCTGCCACTGCCACTGCCACTGCCACTGCCGCTCTATCTCTTCCCACCACATACTCGTCTTCCCGTTCCCTCTCCGACATCGTCTCCGGCCGTTATCTCCTGTCAGACTCGCTGTCCTCCGGCCTCTCCATTAAGCACTCTGTAACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGCCCTTATGTTATCGGCTGCCGATATTGTCCCAAGAACGTCGCATTTGGTCCCTCAATTCTCTTGGCCGAGTTCTGATGTTGCTGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGATGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCGCAGAGGCCTGGGGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTGACTGTTTTCTGCTATCTTTTATACCTATAA

Coding sequence (CDS)

ATGGCTAATCAGCTGCACGGTTACAACTCCGTCTACGGTGCGGCACCTGCCACTGCCACTGCCACTGCCACTGCCGCTCTATCTCTTCCCACCACATACTCGTCTTCCCGTTCCCTCTCCGACATCGTCTCCGGCCGTTATCTCCTGTCAGACTCGCTGTCCTCCGGCCTCTCCATTAAGCACTCTGTAACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGCCCTTATGTTATCGGCTGCCGATATTGTCCCAAGAACGTCGCATTTGGTCCCTCAATTCTCTTGGCCGAGTTCTGATGTTGCTGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGATGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCGCAGAGGCCTGGGGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTGACTGTTTTCTGCTATCTTTTATACCTATAA

Protein sequence

MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSIKHSVTDRGTSMYSTQKEALMLSAADIVPRTSHLVPQFSWPSSDVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVTVFCYLLYL

Homology

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BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H37_ARATH (Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.4e-40
Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 95  QFSWPSS----DVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPR 154
           + +WP        A+A++ +  G+KR+S+ LY  T+LG++NT+GQ+EAWYT++   KRP+
Sbjct: 102 EVAWPPGVEVPGAASAVEPLPPGVKRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPK 161

Query: 155 FESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVTV 206
            ESTS+LP+YPQR GEKDC HYM TRTCKFG+SC+FDHPIWVPEGGIPDWKE  V
Sbjct: 162 LESTSHLPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPV 216

[Close]

BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H8_ORYSJ (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-35
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 101 SDVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVY 160
           S  AA LD+ ++G +RS  VLY Q ++GS++T+ Q EA Y+SN++ KRPR ES+  LP+Y
Sbjct: 45  SSAAADLDARLAGARRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESS--LPIY 104

Query: 161 PQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKE 203
           PQRPGEKDCA YM+TRTCKFG SCKFDHP WVPEGGIP+WKE
Sbjct: 105 PQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKE 144

[Close]

BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.8e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1


Query: 159 VYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPI 191
           VYP RPG +DC+ YM T +CKFG SCKF+HP+
Sbjct: 106 VYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPL 137

[Close]

BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 160 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIP 199
           YP RPGEK+C++Y+ T  CKFG +C+F+HP+ +   G P
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPP 183

[Close]

BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 3.2e-06
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1


Query: 159 VYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPI 191
           VYP RP  +DC+ YM T +CK+G SCKF+HP+
Sbjct: 97  VYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPV 128

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BLAST of Lsi11G015820 vs. TrEMBL
Match: A0A0A0K469_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252650 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 1.9e-98
Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 1


Query: 1   MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSIK 60
           MANQLH YNS YGA  A+ATATA    SLPTTYS+SRSLSDIVSGRYLL DSLSSG+SIK
Sbjct: 1   MANQLHSYNSAYGAVSASATATAVP--SLPTTYSTSRSLSDIVSGRYLLPDSLSSGISIK 60

Query: 61  HSVTDRGTSMYSTQKEALMLSAADIVPRTSHLVPQFSWPSSDVAAALDSVVSGIKRSSDV 120
           HSVTDRGTSMYSTQKE  MLS+ADIVPRTSHLV QFSWP S VAAALDSVVSGIKRSSDV
Sbjct: 61  HSVTDRGTSMYSTQKEGPMLSSADIVPRTSHLVSQFSWPGSHVAAALDSVVSGIKRSSDV 120

Query: 121 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 180
           LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF
Sbjct: 121 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 180

Query: 181 GDSCKFDHPIWVPEGGIPDWKEV 204
           GDSCKFDHPIWVPEGGIPDWKEV
Sbjct: 181 GDSCKFDHPIWVPEGGIPDWKEV 201

[Close]

BLAST of Lsi11G015820 vs. TrEMBL
Match: D7T0Z4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01180 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 123/212 (58.02%), Postives = 153/212 (72.17%), Query Frame = 1


Query: 1   MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSIK 60
           MANQL+GYN  YGAA A+  ++   + S+   + S  SL  + S RYL SD LSS  S  
Sbjct: 1   MANQLYGYNPSYGAA-ASNLSSVYPSRSVTDPFLSDSSL--LSSSRYLSSDHLSSDPSY- 60

Query: 61  HSVTDRGTSMYSTQKEALMLSAADI--VPRTSHLVP-----QFSWPSSDVAAALDSVVSG 120
           +SVT+R +SM+    + L  SA+DI      S  +P       S    DV A++D +V+G
Sbjct: 61  YSVTERHSSMF----DGLRFSASDIGGAGAFSSRIPGGIGASVSTHGVDVGASVDPLVAG 120

Query: 121 IKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYM 180
           +KRSS+ LY  +VLG++NT+GQSEAW+++NSLAKRPRFES SNLP+YPQRPGEKDCAHYM
Sbjct: 121 LKRSSEALYHPSVLGAHNTIGQSEAWFSTNSLAKRPRFESASNLPIYPQRPGEKDCAHYM 180

Query: 181 LTRTCKFGDSCKFDHPIWVPEGGIPDWKEVTV 206
           LTRTCKFGDSCKFDHPIWVPEGGIPDWKEV +
Sbjct: 181 LTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPI 204

[Close]

BLAST of Lsi11G015820 vs. TrEMBL
Match: A0A067KR25_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06908 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.6e-47
Identity = 91/139 (65.47%), Postives = 109/139 (78.42%), Query Frame = 1


Query: 70  MYSTQKEALMLSAADIVPRT-----SHLVPQFSWPSSDVAAALDSVVSGIKRSSDVLYDQ 129
           MY TQ EAL  S    +P       SHL      P  DV AA++ +++GIKRSS+VLY  
Sbjct: 1   MYLTQSEALRYSTDRGIPSAAAATASHLASWTPPPGVDVPAAVEPLLAGIKRSSEVLYHP 60

Query: 130 TVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSC 189
           T++G++N +GQSEAWY+++SLAKR RFES SNLP+YPQRPGEKDCAHYMLTRTCKFGDSC
Sbjct: 61  TIMGAHNIIGQSEAWYSTSSLAKRYRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSC 120

Query: 190 KFDHPIWVPEGGIPDWKEV 204
           KFDHP+WVPEGGIP+WKEV
Sbjct: 121 KFDHPVWVPEGGIPNWKEV 139

[Close]

BLAST of Lsi11G015820 vs. TrEMBL
Match: B9HYE1_POPTR (Enhancer of AG-4 1 family protein OS=Populus trichocarpa GN=POPTR_0010s18390g PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.2e-46
Identity = 113/213 (53.05%), Postives = 140/213 (65.73%), Query Frame = 1


Query: 2   ANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRY-------LLSDS-- 61
           ANQL+GY        ATAT T+ A+ SL  +Y     L+D V  RY       L SDS  
Sbjct: 16  ANQLYGYG-------ATATTTS-ASRSLTDSY-----LTDSVLTRYSGTGSDPLSSDSSK 75

Query: 62  --LSSGLSIKHSVTDRGTSMYSTQKEALMLSAADIVPRTSHLVPQFSWPSSDVAAALDSV 121
             +SS + +K S T      YS  +     SAA   P  S   P    P  DV  A++S+
Sbjct: 76  YSVSSSMYLKQSDT---ALRYSVDRGIASASAAATSPHFSSWTPP---PGVDVPPAVESL 135

Query: 122 VSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCA 181
           V G+KR+ +VLY  T+LG+++T+GQSE WY++NSLAKR RFE+TS+ P+YPQRPGEKDCA
Sbjct: 136 VPGLKRTPEVLYHPTLLGAHSTIGQSEDWYSTNSLAKRVRFETTSHFPIYPQRPGEKDCA 195

Query: 182 HYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEV 204
           HYMLTRTCKFGD+CKFDHP+WVPEGGIPDWKEV
Sbjct: 196 HYMLTRTCKFGDTCKFDHPVWVPEGGIPDWKEV 209

[Close]

BLAST of Lsi11G015820 vs. TrEMBL
Match: B9HI13_POPTR (Enhancer of AG-4 1 family protein OS=Populus trichocarpa GN=POPTR_0008s07980g PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.9e-46
Identity = 109/212 (51.42%), Postives = 144/212 (67.92%), Query Frame = 1


Query: 1   MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLL--SDSLSSGLS 60
           MA QL+GY      APAT +A+ +   S          L+D V  RYL   SD LSS  S
Sbjct: 1   MAKQLYGYG-----APATTSASRSRTDSY---------LTDSVLTRYLGTGSDPLSSDSS 60

Query: 61  IKHSVTDRGTSMYSTQKEALM-------LSAADIVPRTSHLVPQFSWPSSDVAAALDSVV 120
            K+S +   +SMY TQ ++ +       +++A     + HL      P  D  +A+DS+V
Sbjct: 61  -KYSAS---SSMYLTQSDSALRYSVDRGIASAAAAATSPHLSSWPPPPGVDAPSAVDSLV 120

Query: 121 SGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAH 180
            G+KR+ +VLY  T+LG+++T+GQSE WY++N+LAKR RFE+TS+LP+YPQRPGEKDCA+
Sbjct: 121 PGLKRTPEVLYHPTLLGAHSTIGQSEDWYSTNALAKRARFETTSHLPIYPQRPGEKDCAY 180

Query: 181 YMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEV 204
           YMLTRTCKFGD+CKFDHP+WVPEGGIPDWKEV
Sbjct: 181 YMLTRTCKFGDTCKFDHPVWVPEGGIPDWKEV 194

[Close]

BLAST of Lsi11G015820 vs. TAIR10
Match: AT3G12680.1 (AT3G12680.1 floral homeotic protein (HUA1))

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-41
Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 95  QFSWPSS----DVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPR 154
           + +WP        A+A++ +  G+KR+S+ LY  T+LG++NT+GQ+EAWYT++   KRP+
Sbjct: 102 EVAWPPGVEVPGAASAVEPLPPGVKRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPK 161

Query: 155 FESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVTV 206
            ESTS+LP+YPQR GEKDC HYM TRTCKFG+SC+FDHPIWVPEGGIPDWKE  V
Sbjct: 162 LESTSHLPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPV 216

[Close]

BLAST of Lsi11G015820 vs. TAIR10
Match: AT3G48440.1 (AT3G48440.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1


Query: 159 VYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPI 191
           VYP RPG +DC+ YM T +CKFG SCKF+HP+
Sbjct: 106 VYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPL 137

[Close]

BLAST of Lsi11G015820 vs. TAIR10
Match: AT3G06410.1 (AT3G06410.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 160 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIP 199
           YP RPGEK+C++Y+ T  CKFG +C+F+HP+ +   G P
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPP 183

[Close]

BLAST of Lsi11G015820 vs. TAIR10
Match: AT5G63260.2 (AT5G63260.2 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1


Query: 159 VYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPI 191
           VYP RP  +DC+ YM T +CK+G SCKF+HP+
Sbjct: 97  VYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPV 128

[Close]

BLAST of Lsi11G015820 vs. TAIR10
Match: AT3G02830.1 (AT3G02830.1 zinc finger protein 1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-07
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 1


Query: 152 ESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 190
           + T     YP+RPGE DC++Y+ T  C+FG +C+F+HP
Sbjct: 29  DETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHP 66

[Close]

BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|449461124|ref|XP_004148293.1| (PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 2.7e-98
Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 1


Query: 1   MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSIK 60
           MANQLH YNS YGA  A+ATATA    SLPTTYS+SRSLSDIVSGRYLL DSLSSG+SIK
Sbjct: 1   MANQLHSYNSAYGAVSASATATAVP--SLPTTYSTSRSLSDIVSGRYLLPDSLSSGISIK 60

Query: 61  HSVTDRGTSMYSTQKEALMLSAADIVPRTSHLVPQFSWPSSDVAAALDSVVSGIKRSSDV 120
           HSVTDRGTSMYSTQKE  MLS+ADIVPRTSHLV QFSWP S VAAALDSVVSGIKRSSDV
Sbjct: 61  HSVTDRGTSMYSTQKEGPMLSSADIVPRTSHLVSQFSWPGSHVAAALDSVVSGIKRSSDV 120

Query: 121 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 180
           LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF
Sbjct: 121 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 180

Query: 181 GDSCKFDHPIWVPEGGIPDWKEV 204
           GDSCKFDHPIWVPEGGIPDWKEV
Sbjct: 181 GDSCKFDHPIWVPEGGIPDWKEV 201

[Close]

BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|700189075|gb|KGN44308.1| (hypothetical protein Csa_7G252650 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 2.7e-98
Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 1


Query: 1   MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSIK 60
           MANQLH YNS YGA  A+ATATA    SLPTTYS+SRSLSDIVSGRYLL DSLSSG+SIK
Sbjct: 1   MANQLHSYNSAYGAVSASATATAVP--SLPTTYSTSRSLSDIVSGRYLLPDSLSSGISIK 60

Query: 61  HSVTDRGTSMYSTQKEALMLSAADIVPRTSHLVPQFSWPSSDVAAALDSVVSGIKRSSDV 120
           HSVTDRGTSMYSTQKE  MLS+ADIVPRTSHLV QFSWP S VAAALDSVVSGIKRSSDV
Sbjct: 61  HSVTDRGTSMYSTQKEGPMLSSADIVPRTSHLVSQFSWPGSHVAAALDSVVSGIKRSSDV 120

Query: 121 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 180
           LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF
Sbjct: 121 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 180

Query: 181 GDSCKFDHPIWVPEGGIPDWKEV 204
           GDSCKFDHPIWVPEGGIPDWKEV
Sbjct: 181 GDSCKFDHPIWVPEGGIPDWKEV 201

[Close]

BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|659092451|ref|XP_008447068.1| (PREDICTED: zinc finger CCCH domain-containing protein 37 [Cucumis melo])

HSP 1 Score: 359.4 bits (921), Expect = 4.4e-96
Identity = 184/203 (90.64%), Postives = 189/203 (93.10%), Query Frame = 1


Query: 1   MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSIK 60
           MANQLH YNSVYGAA A+A+ATA    SLPTTYSSSRSLSDIVSGRYLL DSLSSG+SIK
Sbjct: 1   MANQLHSYNSVYGAASASASATAVP--SLPTTYSSSRSLSDIVSGRYLLPDSLSSGVSIK 60

Query: 61  HSVTDRGTSMYSTQKEALMLSAADIVPRTSHLVPQFSWPSSDVAAALDSVVSGIKRSSDV 120
            SVTDRGTSMYSTQKE   LS+ADIVPRTSHLV QFSWP S VAAALDSV+SGIKRSSDV
Sbjct: 61  QSVTDRGTSMYSTQKEG-PLSSADIVPRTSHLVTQFSWPGSHVAAALDSVISGIKRSSDV 120

Query: 121 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 180
           LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF
Sbjct: 121 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 180

Query: 181 GDSCKFDHPIWVPEGGIPDWKEV 204
           GDSCKFDHPIWVPEGGIPDWKEV
Sbjct: 181 GDSCKFDHPIWVPEGGIPDWKEV 200

[Close]

BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|720015520|ref|XP_010260864.1| (PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 124/226 (54.87%), Postives = 149/226 (65.93%), Query Frame = 1


Query: 1   MANQLHGYNSVYGAAP-ATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSI 60
           MANQ++GYN  YG    +T   +     S+   Y S  SL  + S RYL SD LS+  S 
Sbjct: 1   MANQIYGYNPSYGGTGLSTVYPSRLTPGSVTDPYLSDSSL--VGSSRYLSSDHLSTTDSS 60

Query: 61  KHSVTDRGTSMYSTQKEALMLSAADI----------------------VPRTSHLVPQFS 120
           K+SV DRG+SM+  Q +AL  S +DI                         T  L+ Q +
Sbjct: 61  KYSVIDRGSSMFLNQNDALRFSGSDIGGIGGAGGFSTSRISGGIGTAAAASTPPLLSQAT 120

Query: 121 WPSSDVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNL 180
           WP  DV AA+D VVSG+KRS++ LY Q VLG++NT+GQSEA ++ NS  KRPRFES SNL
Sbjct: 121 WPGVDVGAAVDPVVSGVKRSTEALYHQNVLGTHNTIGQSEALFSMNSFVKRPRFESASNL 180

Query: 181 PVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEV 204
           P+YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP+WVPEGGIPDWKEV
Sbjct: 181 PIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPLWVPEGGIPDWKEV 224

[Close]

BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|225462348|ref|XP_002269152.1| (PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Vitis vinifera])

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54
Identity = 123/212 (58.02%), Postives = 153/212 (72.17%), Query Frame = 1


Query: 1   MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSIK 60
           MANQL+GYN  YGAA A+  ++   + S+   + S  SL  + S RYL SD LSS  S  
Sbjct: 1   MANQLYGYNPSYGAA-ASNLSSVYPSRSVTDPFLSDSSL--LSSSRYLSSDHLSSDPSY- 60

Query: 61  HSVTDRGTSMYSTQKEALMLSAADI--VPRTSHLVP-----QFSWPSSDVAAALDSVVSG 120
           +SVT+R +SM+    + L  SA+DI      S  +P       S    DV A++D +V+G
Sbjct: 61  YSVTERHSSMF----DGLRFSASDIGGAGAFSSRIPGGIGASVSTHGVDVGASVDPLVAG 120

Query: 121 IKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYM 180
           +KRSS+ LY  +VLG++NT+GQSEAW+++NSLAKRPRFES SNLP+YPQRPGEKDCAHYM
Sbjct: 121 LKRSSEALYHPSVLGAHNTIGQSEAWFSTNSLAKRPRFESASNLPIYPQRPGEKDCAHYM 180

Query: 181 LTRTCKFGDSCKFDHPIWVPEGGIPDWKEVTV 206
           LTRTCKFGDSCKFDHPIWVPEGGIPDWKEV +
Sbjct: 181 LTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPI 204

The following BLAST results are available for this feature:

BLAST of Lsi11G015820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H37_ARATH	4.4e-40	60.87	Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE...	[more]
C3H8_ORYSJ	4.3e-35	65.69	Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=...	[more]
C3H43_ARATH	3.8e-07	65.63	Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g484...	[more]
C3H34_ARATH	1.9e-06	51.28	Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g064...	[more]
C3H67_ARATH	3.2e-06	59.38	Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g632...	[more]

BLAST of Lsi11G015820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K469_CUCSA	1.9e-98	91.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252650 PE=4 SV=1	[more]
D7T0Z4_VITVI	1.3e-54	58.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01180 PE=4 SV=...	[more]
A0A067KR25_JATCU	7.6e-47	65.47	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06908 PE=4 SV=1	[more]
B9HYE1_POPTR	2.2e-46	53.05	Enhancer of AG-4 1 family protein OS=Populus trichocarpa GN=POPTR_0010s18390g PE...	[more]
B9HI13_POPTR	4.9e-46	51.42	Enhancer of AG-4 1 family protein OS=Populus trichocarpa GN=POPTR_0008s07980g PE...	[more]

BLAST of Lsi11G015820 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12680.1	2.5e-41	60.87	floral homeotic protein (HUA1)	[more]
AT3G48440.1	2.1e-08	65.63	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G06410.1	1.1e-07	51.28	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G63260.2	1.8e-07	59.38	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G02830.1	2.4e-07	47.37	zinc finger protein 1	[more]

BLAST of Lsi11G015820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461124\|ref\|XP_004148293.1\|	2.7e-98	91.13	PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Cucumis sat...	[more]
gi\|700189075\|gb\|KGN44308.1\|	2.7e-98	91.13	hypothetical protein Csa_7G252650 [Cucumis sativus]	[more]
gi\|659092451\|ref\|XP_008447068.1\|	4.4e-96	90.64	PREDICTED: zinc finger CCCH domain-containing protein 37 [Cucumis melo]	[more]
gi\|720015520\|ref\|XP_010260864.1\|	2.3e-57	54.87	PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Nelumbo nuc...	[more]
gi\|225462348\|ref\|XP_002269152.1\|	1.9e-54	58.02	PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Vitis vinif...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015820.1	Lsi11G015820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 169..188 score: 2.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 165..189 score: 4.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 163..190 score: 0.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 163..191 score: 13
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 164..190 score: 1.0
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 31..205 score: 2.4
None	No IPR available	PANTHER	PTHR12547:SF63	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37-RELATED	coord: 31..205 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G015820	Cla005477	Watermelon (97103) v1	lsiwmB089

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G015820	Watermelon (97103) v2	lsiwmbB109
Lsi11G015820	Wax gourd	lsiwgoB114
Lsi11G015820	Cucumber (Gy14) v1	cgylsiB397
Lsi11G015820	Cucurbita maxima (Rimu)	cmalsiB474
Lsi11G015820	Cucurbita maxima (Rimu)	cmalsiB516
Lsi11G015820	Cucurbita moschata (Rifu)	cmolsiB459
Lsi11G015820	Cucurbita pepo (Zucchini)	cpelsiB201
Lsi11G015820	Wild cucumber (PI 183967)	cpilsiB511
Lsi11G015820	Cucumber (Chinese Long) v2	culsiB499
Lsi11G015820	Melon (DHL92) v3.5.1	lsimeB091
Lsi11G015820	Watermelon (Charleston Gray)	lsiwcgB076
Lsi11G015820	Cucumber (Gy14) v2	cgyblsiB468
Lsi11G015820	Melon (DHL92) v3.6.1	lsimedB097
Lsi11G015820	Silver-seed gourd	carlsiB484
Lsi11G015820	Cucumber (Chinese Long) v3	cuclsiB533