Lsi11G015770 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G015770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NAC domain-containing protein, putative
Location	chr11 : 24095556 .. 24098557 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCAGAAAATGGACAACAATTAAGTGTTCCACCAGGCTTTCGTTTCCATCCAACTGATGAGGAGCTTCTTTATTACTACCTTAAGAAGAAGGTTTCGTATGAAGCCATTGAGCTTGATGTTATCAGGGAAGTGGATCTAAACAAACTAGAGCCTTGGGACCTCAAAGGTTATTTATTGATTATTATTATTAATTCTTTAGTGTTAAAAGTTTGATATTCAAATAGAAAAATAAGATAAACTATTTACACAAAATAGTAAAATTATGATAGACCCTGATAGAAGTGTATCAGAGTCTATCAATCATAAAAATGATAAAAGTCTATCACTAATAGATGCTGATAGAAGTCTATCAGTGTTTTCTTTTGCTATTTTCTGTAAATAGTTATATAGATTATCTTATTTTTAATTTTCATATAGATACTCTTAATATTCTCTCATTTATCCTATTTTTGCATAAATTTTTTTCACAAAACATTAACTGAACTTCAAGTTAAATCACAAAATCATACAAAATTTAAAATAAAAACAATAAATAGTTAAATACAAAAAGAACATATGTGGCGCTAAATACAAAAAGAAGTCTATTAGAGTCTATTACGGATAGAAATGATAGAAGTACGTCTATGCTGATAGAAGTCTATTAATGTTTATTAGTGTGTTTTTTTTTTACTATTTTCTATAAATAGTTTGACATTTTTTCTAACCGTAAAAATTATCTAATAAACCTAGAAGATCATGGTTTTTTGGTTTTGATTTAACAATTAGCTAAGGAAATTGGGTTAGTAGATTCATTTGCATGGACGTAGATGTTCTCTTGTAGATACATATATATAAATCTAAATAAACAAAAAGAATAATATATGTGTTAATTTTTGGTTATTTTAGATAAATGTAGAATTGGATCTGGGCATCAAAATGAGTGGTATTTCTTTAGCCATAAGGATAAAAAATATCCAACTGGAACTCGAACGAATAGAGCAACGAGTGCTGGATTTTGGAAGGCAACAGGGAGAGACAAAACAATTCACATGAGCAATTGCAATTCCAAAAGGATTGGGATGAGGAAGACATTGGTGTTCTACACAGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAATACCGTCTTGAAGATGACAATCCCGAGGTTTATATATATATATATATATATATATATATATATATATATATATATATATATTTGTTATTATTATTATTTTTTTTTTTCAAAGGAAATTACCCTTGTTTCCTTCCCTAGATTTTAGTTACGTTTTATATATTATATTTATAGCTAGGCCGCTCATAGGCAAAAATTAGCTCCATCTCAATGTTACCCAAGTATGCTAACAGATTTGATAATGTTTATACCCATTTGTTTTTTTTTAAATTTAGCTTATAAACAAATATGTATTCATTTTTTACTTATATTTTAAAAAACCAACCTAAAATTTAAAAATTAAAAAAACATATATATATATATATATATATATATATATATATATATATATAGAAAATTTTCACAGATAAAAAAAATTGTCAAACTATTTACAGAAAATAGCAAAAAAACACGGATAGATATTGATAGGCTTCTATCCGCGTCTATCACAACTACCTAAAAATTTTGCTATTTTGTGTAAATAGTTTCCCTTGTTTTTCTATTTTTAAAAATCTCTCTCTATATATATATATATATATACAATTTTTAAAAACAGAAAAATAAAGGAAACTATTTACACAAAATAGCAACATTTTTAGATAGTTGTGATATACGCCCATAAAAGTCTATCAAGGTCTATCAATGTCTATTAGTATTTTTTTTTTTGTTATTTTCTGTAAATAGTTTGACATTTTTTCTATTTGTGAAAATTTTTCTATATATATATTCAATTAAACAAATTTTTATTTTTAAAATTTAATTAAGAATTTAAGTATTTCAAATTATAATAGACATAAATTTTAAAAAATAAAATCAATACCAAATGAGACCTTAATAAAGTAAAAAAAATTTAAAAATAAAAAAATAAGGAAAACTATTTACACAAAATAGCAAAATTTTTAAATAGTTATGATAGATACTGATATAAGTCTATCATATCTATCTGTGATAGAAATTATAGAAATCTATGACTGATCGATGCTCATAGAAGTCTATCAATATTTTTTCTGTTATTTTCAATAAATAGTTTGACATGTTTTCTAATCTATGAAAATTTGTCTTAATAAAACCTATCTAACTAACCAAAGTAAAAAGACCATGTGTTCGAACTTGGTCAAAAGGTTCAAATCTCTCCCATCTTAATTACATTAAGCTGATTCATTTAATAACAAAATTTAGATAATAAATTTCAAAAAGCCAAATACTAAATGGAAGGAAGGAGCTAGGGTGATGATCTCTGTTGAATTCCAACTTGTGAAATGGGGTTTTTTTCTTCTTTTAATTATATAGCTGCAGGAAGATGGGTGGGTGGTGTGCAGAGTTTTCAAGAAGAAAAGTCACAAGCCAGAGGTTCCACAAGAGCAGCAGTTAGATTACTATGCGCATACGAAGTTAGGTAGCAGTTCTGCTTCTGCCGTGGGTGCAGAAATGGGAGAGCCAAAAAACAATAATAATCATATGCAAGCAGAGCCATATAATAATAATAATTATAGCTTTGATGGTTGCATGCAGCTGCCGCAGCTGTTTAGTCCAGAGTCGTCAGTTGCAACACCTATCTCTTTAAACGCCACCGCCACTGCCGCCGCGGCTGCCGTTGAGTGTCCTCAAAATATCTGGAGGCTAAGTTGCGGGCTCGTGCAACATGAGCGGTTGAACACTGATTGGTCGTTCTTGAATAGGCTGCTTGCTTTGGATCAACAATCCCGTTCCATATCTACGCCTTCGGATGACCTTACTATGGGACACCCCAACTCCAGAAAGTTTTCATTTCCATTTCCATATCCTTATCCTCTTGCTTCTGCTGCCGACTTTATCAAATTCTCCAAGTAG

mRNA sequence

ATGATGCCAGAAAATGGACAACAATTAAGTGTTCCACCAGGCTTTCGTTTCCATCCAACTGATGAGGAGCTTCTTTATTACTACCTTAAGAAGAAGGTTTCAATTGGATCTGGGCATCAAAATGAGTGGTATTTCTTTAGCCATAAGGATAAAAAATATCCAACTGGAACTCGAACGAATAGAGCAACGAGTGCTGGATTTTGGAAGGCAACAGGGAGAGACAAAACAATTCACATGAGCAATTGCAATTCCAAAAGGATTGGGATGAGGAAGACATTGGTGTTCTACACAGGTAGCAGTTCTGCTTCTGCCGTGGGTGCAGAAATGGGAGAGCCAAAAAACAATAATAATCATATGCAAGCAGAGCCATATAATAATAATAATTATAGCTTTGATGGTTGCATGCAGCTGCCGCAGCTGTTTAGTCCAGAGTCGTCAGTTGCAACACCTATCTCTTTAAACGCCACCGCCACTGCCGCCGCGGCTGCCGTTGAGTGTCCTCAAAATATCTGGAGGCTAAGTTGCGGGCTCGTGCAACATGAGCGGTTGAACACTGATTGGTCGTTCTTGAATAGGCTGCTTGCTTTGGATCAACAATCCCGTTCCATATCTACGCCTTCGGATGACCTTACTATGGGACACCCCAACTCCAGAAAGTTTTCATTTCCATTTCCATATCCTTATCCTCTTGCTTCTGCTGCCGACTTTATCAAATTCTCCAAGTAG

Coding sequence (CDS)

ATGATGCCAGAAAATGGACAACAATTAAGTGTTCCACCAGGCTTTCGTTTCCATCCAACTGATGAGGAGCTTCTTTATTACTACCTTAAGAAGAAGGTTTCAATTGGATCTGGGCATCAAAATGAGTGGTATTTCTTTAGCCATAAGGATAAAAAATATCCAACTGGAACTCGAACGAATAGAGCAACGAGTGCTGGATTTTGGAAGGCAACAGGGAGAGACAAAACAATTCACATGAGCAATTGCAATTCCAAAAGGATTGGGATGAGGAAGACATTGGTGTTCTACACAGGTAGCAGTTCTGCTTCTGCCGTGGGTGCAGAAATGGGAGAGCCAAAAAACAATAATAATCATATGCAAGCAGAGCCATATAATAATAATAATTATAGCTTTGATGGTTGCATGCAGCTGCCGCAGCTGTTTAGTCCAGAGTCGTCAGTTGCAACACCTATCTCTTTAAACGCCACCGCCACTGCCGCCGCGGCTGCCGTTGAGTGTCCTCAAAATATCTGGAGGCTAAGTTGCGGGCTCGTGCAACATGAGCGGTTGAACACTGATTGGTCGTTCTTGAATAGGCTGCTTGCTTTGGATCAACAATCCCGTTCCATATCTACGCCTTCGGATGACCTTACTATGGGACACCCCAACTCCAGAAAGTTTTCATTTCCATTTCCATATCCTTATCCTCTTGCTTCTGCTGCCGACTTTATCAAATTCTCCAAGTAG

Protein sequence

MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVSIGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYTGSSSASAVGAEMGEPKNNNNHMQAEPYNNNNYSFDGCMQLPQLFSPESSVATPISLNATATAAAAAVECPQNIWRLSCGLVQHERLNTDWSFLNRLLALDQQSRSISTPSDDLTMGHPNSRKFSFPFPYPYPLASAADFIKFSK

Homology

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BLAST of Lsi11G015770 vs. Swiss-Prot
Match: SMB_ARATH (Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.1e-38
Identity = 81/120 (67.50%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 6   GQQLSVPPGFRFHPTDEELLYYYLKKKVS---------------------------IGSG 65
           G QLSVPPGFRFHPT+EELLYYYLKKKVS                           IGSG
Sbjct: 12  GGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRIGSG 71

Query: 66  HQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYTG 99
            QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK+IH++  +SK+IG+RKTLVFYTG
Sbjct: 72  PQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLN--SSKKIGLRKTLVFYTG 129

[Close]

BLAST of Lsi11G015770 vs. Swiss-Prot
Match: NAC76_ORYSJ (NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 3.7e-35
Identity = 78/124 (62.90%), Postives = 86/124 (69.35%), Query Frame = 1


Query: 2   MPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS--------------------------- 61
           M  +G  LSVPPGFRFHPTDEELLYYYL+KKV+                           
Sbjct: 1   MHPSGGALSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCR 60

Query: 62  IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLV 99
           IG+G QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK I ++  N+ RIGMRKTLV
Sbjct: 61  IGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLA--NACRIGMRKTLV 120

[Close]

BLAST of Lsi11G015770 vs. Swiss-Prot
Match: NAC43_ARATH (NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-31
Identity = 73/121 (60.33%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 5   NGQQLSVPPGFRFHPTDEELLYYYLKKKVS---------------------------IGS 64
           NGQ   VPPGFRFHPT+EELL YYL+KKV+                           IG+
Sbjct: 11  NGQS-QVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGT 70

Query: 65  GHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYT 99
             QN+WYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK I+    N +RIGMRKTLVFY 
Sbjct: 71  TPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIY---SNGRRIGMRKTLVFYK 127

[Close]

BLAST of Lsi11G015770 vs. Swiss-Prot
Match: NAC66_ARATH (NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.3e-31
Identity = 72/121 (59.50%), Postives = 80/121 (66.12%), Query Frame = 1


Query: 5   NGQQLSVPPGFRFHPTDEELLYYYLKKKVS---------------------------IGS 64
           NGQ   VPPGFRFHPT+EELL YYL+KK+S                           IG+
Sbjct: 6   NGQS-QVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGT 65

Query: 65  GHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYT 99
             QN+WYF+SHKDKKYPTGTRTNRAT+ GFWKATGRDKTI+    N  RIGMRKTLVFY 
Sbjct: 66  TPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIY---TNGDRIGMRKTLVFYK 122

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BLAST of Lsi11G015770 vs. Swiss-Prot
Match: BRN2_ARATH (Protein BEARSKIN2 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.3e-31
Identity = 72/115 (62.61%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 11  VPPGFRFHPTDEELLYYYLKKKVS---------------------------IGSGHQNEW 70
           VPPGFRFHPTDEELL+YYLKKK+S                           IGS  QNEW
Sbjct: 9   VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEW 68

Query: 71  YFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYTG 99
           YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I  S    K+IGMRKTLVFY G
Sbjct: 69  YFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNS---YKKIGMRKTLVFYKG 120

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BLAST of Lsi11G015770 vs. TrEMBL
Match: A0A0S3SJV8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G199500 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.9e-50
Identity = 143/327 (43.73%), Postives = 167/327 (51.07%), Query Frame = 1


Query: 1   MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS-------------------------- 60
           MMP NGQ L+VPPGFRFHPTDEELLYYYL+KKVS                          
Sbjct: 1   MMPSNGQ-LTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKC 60

Query: 61  -IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTL 120
            IGSG QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK+I+  + NSKRIGMRKTL
Sbjct: 61  RIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIY--HTNSKRIGMRKTL 120

Query: 121 VFYTGSSSASA-----------------------VGAEMGEPKNNNNHMQAEPYNNNN-- 180
           VFYTG +                           V   + + KN N   Q E     N  
Sbjct: 121 VFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEIEEEENLT 180

Query: 181 -----------------------YSFDGCMQLPQLFSPESSVATPISLNATATAAAAAVE 240
                                  Y+FDG MQLPQLFSPES+ A   S   T+  A   +E
Sbjct: 181 HMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAAAPSSSCLGTSMNAMDILE 240

Query: 241 CPQNIWRLS---CGL----VQHERLNTDWSFLNRLL----ALDQQSRSISTPSDDLTMGH 242
           C QN+ RL+   CGL     Q ER + DWSFL++LL    A+D Q    S  +       
Sbjct: 241 CSQNLLRLTTSGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAA 300

[Close]

BLAST of Lsi11G015770 vs. TrEMBL
Match: A0A0L9UJP9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g039800 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.9e-50
Identity = 143/327 (43.73%), Postives = 167/327 (51.07%), Query Frame = 1


Query: 1   MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS-------------------------- 60
           MMP NGQ L+VPPGFRFHPTDEELLYYYL+KKVS                          
Sbjct: 1   MMPSNGQ-LTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKC 60

Query: 61  -IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTL 120
            IGSG QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK+I+  + NSKRIGMRKTL
Sbjct: 61  RIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIY--HTNSKRIGMRKTL 120

Query: 121 VFYTGSSSASA-----------------------VGAEMGEPKNNNNHMQAEPYNNNN-- 180
           VFYTG +                           V   + + KN N   Q E     N  
Sbjct: 121 VFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEIEEEENLT 180

Query: 181 -----------------------YSFDGCMQLPQLFSPESSVATPISLNATATAAAAAVE 240
                                  Y+FDG MQLPQLFSPES+ A   S   T+  A   +E
Sbjct: 181 HMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAAAPSSSCLGTSMNAMDILE 240

Query: 241 CPQNIWRLS---CGL----VQHERLNTDWSFLNRLL----ALDQQSRSISTPSDDLTMGH 242
           C QN+ RL+   CGL     Q ER + DWSFL++LL    A+D Q    S  +       
Sbjct: 241 CSQNLLRLTTSGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAA 300

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BLAST of Lsi11G015770 vs. TrEMBL
Match: A0A0A0K475_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252700 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.9e-50
Identity = 115/148 (77.70%), Postives = 120/148 (81.08%), Query Frame = 1


Query: 98  GSSSASAVGAEMGEPKNNNNHMQAEPYNNNNYSFDGCMQLPQLFSPESSVA---TPISLN 157
           G SS SAVG EMGEPKNNNNHMQ EP+NNN+YSFDGCMQLPQLFSPESS       ISLN
Sbjct: 188 GGSSGSAVGTEMGEPKNNNNHMQ-EPHNNNDYSFDGCMQLPQLFSPESSTVPTLPAISLN 247

Query: 158 ATATAAAAAVECPQNIWRLSCGLVQHERLN-TDWSFLNRLLALDQQSRSISTPSDDLTMG 217
               AA AAVECPQNIWRLSCG+VQHERLN TDWSFLNRLLALDQQSRS ST SD+LT+ 
Sbjct: 248 ----AAGAAVECPQNIWRLSCGVVQHERLNTTDWSFLNRLLALDQQSRSKSTLSDELTI- 307

Query: 218 HPNSRKFSFPFPYPYPLASAADFIKFSK 242
              SR FSFPFPYPY L S  DFIKFSK
Sbjct: 308 ---SRNFSFPFPYPYHLPSGPDFIKFSK 326

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BLAST of Lsi11G015770 vs. TrEMBL
Match: M0S9J3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.2e-42
Identity = 130/291 (44.67%), Postives = 158/291 (54.30%), Query Frame = 1


Query: 1   MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS-------------------------- 60
           MMP NGQ LS+PPGFRFHPTDEELLYYYL+KKV+                          
Sbjct: 11  MMPSNGQ-LSIPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIRDVDINKLEPWDLKEKC 70

Query: 61  -IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTL 120
            IGSG QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK IH+S  +SKRIGMRKTL
Sbjct: 71  RIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLS--SSKRIGMRKTL 130

Query: 121 VFYTG-SSSASAVGAEMGEPK--NNNNHMQAE------PYNNNNYSF----DGCMQLPQL 180
           VFYTG +         M E +  + N  +Q +       +   NY      +  M+    
Sbjct: 131 VFYTGRAPHGQKTDWIMHEYRLEDRNPDIQEDGWVVCRVFKKKNYQRGIPPEAVMEEDHS 190

Query: 181 FSPESSVATPISLNATATAAAAAVECPQNIWRLSCG---LVQHERLNTDWSFLNRLLA-- 240
            +  S    P+S+N      +  +EC QN+ +L+ G   L+  +R   DWS L++LLA  
Sbjct: 191 EATISPFVPPLSIN------SLDLECSQNLMKLTTGGGALLPQDRFPGDWSILDKLLASH 250

[Close]

BLAST of Lsi11G015770 vs. TrEMBL
Match: A0A151QYH5_CAJCA (NAC domain-containing protein 76 OS=Cajanus cajan GN=KK1_043606 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.4e-42
Identity = 119/252 (47.22%), Postives = 136/252 (53.97%), Query Frame = 1


Query: 1   MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS-------------------------- 60
           MMP NGQ L+VPPGFRFHPTDEELLYYYL+KKVS                          
Sbjct: 1   MMPGNGQ-LTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKC 60

Query: 61  -IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTL 120
            IGSG QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK I+  + NSKRIGMRKTL
Sbjct: 61  RIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIY--HTNSKRIGMRKTL 120

Query: 121 VFYTGSSSASA-----------------------VGAEMGEPKNNN-------------- 175
           VFYTG +                           V   + + KN N              
Sbjct: 121 VFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEMEEEEHLT 180

[Close]

BLAST of Lsi11G015770 vs. TAIR10
Match: AT1G79580.1 (AT1G79580.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein)

HSP 1 Score: 158.7 bits (400), Expect = 4.5e-39
Identity = 81/120 (67.50%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 6   GQQLSVPPGFRFHPTDEELLYYYLKKKVS---------------------------IGSG 65
           G QLSVPPGFRFHPT+EELLYYYLKKKVS                           IGSG
Sbjct: 12  GGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRIGSG 71

Query: 66  HQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYTG 99
            QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK+IH++  +SK+IG+RKTLVFYTG
Sbjct: 72  PQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLN--SSKKIGLRKTLVFYTG 129

[Close]

BLAST of Lsi11G015770 vs. TAIR10
Match: AT2G46770.1 (AT2G46770.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein)

HSP 1 Score: 137.9 bits (346), Expect = 8.3e-33
Identity = 73/121 (60.33%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 5   NGQQLSVPPGFRFHPTDEELLYYYLKKKVS---------------------------IGS 64
           NGQ   VPPGFRFHPT+EELL YYL+KKV+                           IG+
Sbjct: 11  NGQS-QVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGT 70

Query: 65  GHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYT 99
             QN+WYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK I+    N +RIGMRKTLVFY 
Sbjct: 71  TPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIY---SNGRRIGMRKTLVFYK 127

[Close]

BLAST of Lsi11G015770 vs. TAIR10
Match: AT3G61910.1 (AT3G61910.1 NAC domain protein 66)

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-32
Identity = 72/121 (59.50%), Postives = 80/121 (66.12%), Query Frame = 1


Query: 5   NGQQLSVPPGFRFHPTDEELLYYYLKKKVS---------------------------IGS 64
           NGQ   VPPGFRFHPT+EELL YYL+KK+S                           IG+
Sbjct: 6   NGQS-QVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGT 65

Query: 65  GHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYT 99
             QN+WYF+SHKDKKYPTGTRTNRAT+ GFWKATGRDKTI+    N  RIGMRKTLVFY 
Sbjct: 66  TPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIY---TNGDRIGMRKTLVFYK 122

[Close]

BLAST of Lsi11G015770 vs. TAIR10
Match: AT4G10350.1 (AT4G10350.1 NAC domain containing protein 70)

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-32
Identity = 72/115 (62.61%), Postives = 77/115 (66.96%), Query Frame = 1


Query: 11  VPPGFRFHPTDEELLYYYLKKKVS---------------------------IGSGHQNEW 70
           VPPGFRFHPTDEELL+YYLKKK+S                           IGS  QNEW
Sbjct: 9   VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEW 68

Query: 71  YFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTLVFYTG 99
           YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I  S    K+IGMRKTLVFY G
Sbjct: 69  YFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNS---YKKIGMRKTLVFYKG 120

[Close]

BLAST of Lsi11G015770 vs. TAIR10
Match: AT1G33280.1 (AT1G33280.1 NAC domain containing protein 15)

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-32
Identity = 74/125 (59.20%), Postives = 80/125 (64.00%), Query Frame = 1


Query: 1   MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS-------------------------- 60
           M   NG    VPPGFRFHPTDEELL+YYLKKK+S                          
Sbjct: 1   MSSSNG---GVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRC 60

Query: 61  -IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTL 99
            IGS  QNEWYFFSHKD+KYPTG+RTNRAT +GFWKATGRDK I  S    K+IGMRKTL
Sbjct: 61  KIGSTPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNS---YKKIGMRKTL 119

[Close]

BLAST of Lsi11G015770 vs. NCBI nr
Match: gi|950973511|ref|XP_014500739.1| (PREDICTED: NAC domain-containing protein 76 [Vigna radiata var. radiata])

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 145/327 (44.34%), Postives = 168/327 (51.38%), Query Frame = 1


Query: 1   MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS-------------------------- 60
           MMP NGQ L+VPPGFRFHPTDEELLYYYL+KKVS                          
Sbjct: 1   MMPSNGQ-LTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKC 60

Query: 61  -IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTL 120
            IGSG QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK I+  + NSKRIGMRKTL
Sbjct: 61  RIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIY--HTNSKRIGMRKTL 120

Query: 121 VFYTGSSSASA-----------------------VGAEMGEPKNNNNHMQAEPYNNNN-- 180
           VFYTG +                           V   + + KN N   Q E     N  
Sbjct: 121 VFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEIEEEENLT 180

Query: 181 -----------------------YSFDGCMQLPQLFSPESSVATPISLNATATAAAAAVE 240
                                  Y+FDG MQLPQLFSPES+VA   S  AT+  A   +E
Sbjct: 181 HMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAVAPNNSCLATSMNAMDILE 240

Query: 241 CPQNIWRLS---CGL----VQHERLNTDWSFLNRLL----ALDQQSRSISTPSDDLTMGH 242
           C QN+ RL+   CGL     Q ER + DWSFL++LL    A+D Q    S  +       
Sbjct: 241 CSQNLLRLTTNGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAA 300

[Close]

BLAST of Lsi11G015770 vs. NCBI nr
Match: gi|659092435|ref|XP_008447060.1| (PREDICTED: NAC domain-containing protein 76 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 3.2e-50
Identity = 116/147 (78.91%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 98  GSSSASAVGAEMGEPKNNNNHMQAEPYNNNNYSFDGCMQLPQLFSPESS--VATPISLNA 157
           G SS SA G  MGEPKNNNNHMQ EP+NNN+YSFDGCMQLPQLFSPESS     PISLN 
Sbjct: 188 GGSSGSAEGTGMGEPKNNNNHMQ-EPHNNNDYSFDGCMQLPQLFSPESSSVPTLPISLN- 247

Query: 158 TATAAAAAVECPQNIWRLSCGLVQHERLN-TDWSFLNRLLALDQQSRSISTPSDDLTMGH 217
              AAAAAVECPQNIWRLSCG+VQHERLN TDWSFLNRLLALDQQSRS ST SDDLT+  
Sbjct: 248 ---AAAAAVECPQNIWRLSCGVVQHERLNTTDWSFLNRLLALDQQSRSKSTLSDDLTI-- 307

Query: 218 PNSRKFSFPFPYPYPLASAADFIKFSK 242
             SR FSFPFPYPY L S  DFIKFSK
Sbjct: 308 --SRNFSFPFPYPYSLPSGPDFIKFSK 325

[Close]

BLAST of Lsi11G015770 vs. NCBI nr
Match: gi|920699569|gb|KOM42794.1| (hypothetical protein LR48_Vigan05g039800 [Vigna angularis])

HSP 1 Score: 206.8 bits (525), Expect = 4.1e-50
Identity = 143/327 (43.73%), Postives = 167/327 (51.07%), Query Frame = 1


Query: 1   MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS-------------------------- 60
           MMP NGQ L+VPPGFRFHPTDEELLYYYL+KKVS                          
Sbjct: 1   MMPSNGQ-LTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKC 60

Query: 61  -IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTL 120
            IGSG QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK+I+  + NSKRIGMRKTL
Sbjct: 61  RIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIY--HTNSKRIGMRKTL 120

Query: 121 VFYTGSSSASA-----------------------VGAEMGEPKNNNNHMQAEPYNNNN-- 180
           VFYTG +                           V   + + KN N   Q E     N  
Sbjct: 121 VFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEIEEEENLT 180

Query: 181 -----------------------YSFDGCMQLPQLFSPESSVATPISLNATATAAAAAVE 240
                                  Y+FDG MQLPQLFSPES+ A   S   T+  A   +E
Sbjct: 181 HMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAAAPSSSCLGTSMNAMDILE 240

Query: 241 CPQNIWRLS---CGL----VQHERLNTDWSFLNRLL----ALDQQSRSISTPSDDLTMGH 242
           C QN+ RL+   CGL     Q ER + DWSFL++LL    A+D Q    S  +       
Sbjct: 241 CSQNLLRLTTSGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAA 300

[Close]

BLAST of Lsi11G015770 vs. NCBI nr
Match: gi|720064473|ref|XP_010275962.1| (PREDICTED: protein SOMBRERO isoform X1 [Nelumbo nucifera])

HSP 1 Score: 206.5 bits (524), Expect = 5.4e-50
Identity = 147/333 (44.14%), Postives = 176/333 (52.85%), Query Frame = 1


Query: 1   MMPENGQQLSVPPGFRFHPTDEELLYYYLKKKVS-------------------------- 60
           MMP NGQ +SVPPGFRFHPTDEELLYYYL+KKV+                          
Sbjct: 3   MMPANGQ-VSVPPGFRFHPTDEELLYYYLRKKVAYEVIDLDVIKDVDLNKLEPWDLKEKC 62

Query: 61  -IGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSNCNSKRIGMRKTL 120
            IGSG QNEWYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK IH+S  NSKRIGMRKTL
Sbjct: 63  RIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLS--NSKRIGMRKTL 122

Query: 121 VFYTGSSSASA-------------------------VGAEMGEPKNNNNHMQAE------ 180
           VFYTG +                             V   + + KN++   Q E      
Sbjct: 123 VFYTGRAPHGQKTDWIMHEYRLDDENTELQQQEDGWVVCRVFKKKNHHRGFQPEATREEE 182

Query: 181 --------------PYNN----NNYSFDGCMQLPQLFSPESSVA----TPISLNATATAA 240
                         P  N     +++FDG M LPQL SPES+VA     PI+ N T    
Sbjct: 183 NFNYFKASGSLPLDPKQNFLTQYDFTFDGSMHLPQLMSPESAVAPSFFPPITFNTT---- 242

Query: 241 AAAVECPQNIWRLSC---GLVQH-ERLNTDWSFLNRLLA------LDQ--QSRSISTPSD 242
              +EC  N+ +L+    GL+QH +R+N DWSFL++LLA      LDQ  Q    S+ S 
Sbjct: 243 --DIECSHNLMKLTSSGGGLLQHDQRINGDWSFLDKLLASHSHQSLDQLYQQNKCSSSSQ 302

[Close]

BLAST of Lsi11G015770 vs. NCBI nr
Match: gi|449461154|ref|XP_004148307.1| (PREDICTED: NAC domain-containing protein 76-like [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 7.0e-50
Identity = 115/148 (77.70%), Postives = 120/148 (81.08%), Query Frame = 1


Query: 98  GSSSASAVGAEMGEPKNNNNHMQAEPYNNNNYSFDGCMQLPQLFSPESSVA---TPISLN 157
           G SS SAVG EMGEPKNNNNHMQ EP+NNN+YSFDGCMQLPQLFSPESS       ISLN
Sbjct: 188 GGSSGSAVGTEMGEPKNNNNHMQ-EPHNNNDYSFDGCMQLPQLFSPESSTVPTLPAISLN 247

Query: 158 ATATAAAAAVECPQNIWRLSCGLVQHERLN-TDWSFLNRLLALDQQSRSISTPSDDLTMG 217
               AA AAVECPQNIWRLSCG+VQHERLN TDWSFLNRLLALDQQSRS ST SD+LT+ 
Sbjct: 248 ----AAGAAVECPQNIWRLSCGVVQHERLNTTDWSFLNRLLALDQQSRSKSTLSDELTI- 307

Query: 218 HPNSRKFSFPFPYPYPLASAADFIKFSK 242
              SR FSFPFPYPY L S  DFIKFSK
Sbjct: 308 ---SRNFSFPFPYPYHLPSGPDFIKFSK 326

The following BLAST results are available for this feature:

BLAST of Lsi11G015770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SMB_ARATH	8.1e-38	67.50	Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1	[more]
NAC76_ORYSJ	3.7e-35	62.90	NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 S...	[more]
NAC43_ARATH	1.5e-31	60.33	NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2	[more]
NAC66_ARATH	3.3e-31	59.50	NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1	[more]
BRN2_ARATH	4.3e-31	62.61	Protein BEARSKIN2 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1	[more]

BLAST of Lsi11G015770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3SJV8_PHAAN	2.9e-50	43.73	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G199500 PE=...	[more]
A0A0L9UJP9_PHAAN	2.9e-50	43.73	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g039800 PE=4 SV=1	[more]
A0A0A0K475_CUCSA	4.9e-50	77.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252700 PE=4 SV=1	[more]
M0S9J3_MUSAM	2.2e-42	44.67	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A151QYH5_CAJCA	6.4e-42	47.22	NAC domain-containing protein 76 OS=Cajanus cajan GN=KK1_043606 PE=4 SV=1	[more]

BLAST of Lsi11G015770 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79580.1	4.5e-39	67.50	NAC (No Apical Meristem) domain transcriptional regulator superfamil...	[more]
AT2G46770.1	8.3e-33	60.33	NAC (No Apical Meristem) domain transcriptional regulator superfamil...	[more]
AT3G61910.1	1.9e-32	59.50	NAC domain protein 66	[more]
AT4G10350.1	2.4e-32	62.61	NAC domain containing protein 70	[more]
AT1G33280.1	4.1e-32	59.20	NAC domain containing protein 15	[more]

BLAST of Lsi11G015770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|950973511\|ref\|XP_014500739.1\|	1.1e-50	44.34	PREDICTED: NAC domain-containing protein 76 [Vigna radiata var. radiata]	[more]
gi\|659092435\|ref\|XP_008447060.1\|	3.2e-50	78.91	PREDICTED: NAC domain-containing protein 76 [Cucumis melo]	[more]
gi\|920699569\|gb\|KOM42794.1\|	4.1e-50	43.73	hypothetical protein LR48_Vigan05g039800 [Vigna angularis]	[more]
gi\|720064473\|ref\|XP_010275962.1\|	5.4e-50	44.14	PREDICTED: protein SOMBRERO isoform X1 [Nelumbo nucifera]	[more]
gi\|449461154\|ref\|XP_004148307.1\|	7.0e-50	77.70	PREDICTED: NAC domain-containing protein 76-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0048829	root cap development
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003441	NAC-dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048829	root cap development
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015770.1	Lsi11G015770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 12..98 score: 1.4
IPR003441	NAC domain	PROFILE	PS51005	NAC	coord: 1..139 score: 21
IPR003441	NAC domain	unknown	SSF101941	NAC domain	coord: 5..101 score: 7.72
None	No IPR available	PANTHER	PTHR31989	FAMILY NOT NAMED	coord: 1..98 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G015770	Cucsa.240210	Cucumber (Gy14) v1	cgylsiB397
Lsi11G015770	Cla005472	Watermelon (97103) v1	lsiwmB089
Lsi11G015770	ClCG09G022950	Watermelon (Charleston Gray)	lsiwcgB076
Lsi11G015770	MELO3C012573.2	Melon (DHL92) v3.6.1	lsimedB097
Lsi11G015770	Cla97C09G184530	Watermelon (97103) v2	lsiwmbB109
Lsi11G015770	Cp4.1LG15g09030	Cucurbita pepo (Zucchini)	cpelsiB201
Lsi11G015770	CsGy7G010580	Cucumber (Gy14) v2	cgyblsiB468
Lsi11G015770	Carg15640	Silver-seed gourd	carlsiB484
Lsi11G015770	CsaV3_7G023210	Cucumber (Chinese Long) v3	cuclsiB533

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G015770	Wild cucumber (PI 183967)	cpilsiB511
Lsi11G015770	Cucumber (Chinese Long) v2	culsiB499
Lsi11G015770	Melon (DHL92) v3.5.1	lsimeB091
Lsi11G015770	Wax gourd	lsiwgoB114
Lsi11G015770	Cucurbita maxima (Rimu)	cmalsiB474
Lsi11G015770	Cucurbita maxima (Rimu)	cmalsiB516
Lsi11G015770	Cucurbita moschata (Rifu)	cmolsiB459
Lsi11G015770	Cucurbita pepo (Zucchini)	cpelsiB606