Lsi11G015730 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G015730
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10
Location	chr11 : 24057006 .. 24059851 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAACAAGGTGGTTCACCAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTCAGGGAGGTCAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGATTACTTCTACTAGTCAAACCAAAGGAGGTGATCAAGATTCTAGCTCAAGCTCCATGATGCACTTTGTGCCTTGATCATCTTTATGAACCCCTTTCTCCATCTCTCAAAAATATTTATATATGGTAATTAAATCTAACTACCAAATCCTTATTATATCATCCCTTTTTTCTTCTTCTTAATTTTTAAGTTTGACCATGTGGTTCGGTGTATGAATTAGAACATTTAATGTTTAAGACAGATGTGTGATGTGGTAATGAATCTACTTTTGGGTTTGAGATATGATGAGAGTGTTACGGATATGTCAACCTAGTTGAGAGATGTCCAAGTACACCTCCTGATCTATCTTTATTCTCTAGTATATCCTGCTCAAAGACAAATAGATGTGTGATAATATATATATCTTAAGTAGTTGAGTTGAGATATTATAACTGAAGTTCGTTGGCTTTATGTTATGATCATTATTTATTTCAACATTTTTTAAAATTAATTTTAGGGCTATGAATAATTCTGGATTTTGATGAATGATCTTACGAAATAACTGCAGAAGATTACATACAACCATACAACAACAACTCTATGTCTCAAAGAAGGATATAATGGAAAGTAGAGTAATAGTAAGTGTGTGTGATAGTACTTGATCTAGCTACAAGCAAAATTGAGTTGATTTAAGGTTATAATTTAGATCATTCTTCCATAGATAAACATTCTTGCAAACTCATGCATTTCTAAACCTTGGTGTTTTTTCATCAAGGATTGTGATGTTTTTCTTATGCTTTTATAAATAATGTTGTTTTTTTCTAAAACATTTTTGAAGAAAATGATTAAAGTAATTTTCATTTGTTGTGACAAAAATCATGTCCTTGTAATGTATTTGGCATAGTGATAATTTTTCCAAGTTTGCTTTATTGTAGGGCTTTAATTTGTTAATTATCTTGATCTTGTAATCTCTTCTATTTCTAATATAATTAAATCCATGGTTGTCACAACCAAAATCTCTATTATTTGCATTATATATGAGACACCATGCTGTTTATTATTTTAATTGTTAAAATTAATGACCCACTAATTTTTTTCAATGGTTGCTTTCAGAAGATCCATAAAATAGTAATTCTTTTTATTTAATTATTATTATTATTATTATTTATTTATTTATTTATTTTTAGTTTTACCTTCGTACTATGTCTAGATTTGCTTCTTGTCCAATATTAGATTTTGTGGGACACTGAGTTATATTCCATCATCTAAATGTTTGGACTTGAAAGTCTTTTGATATTCCTTATTTCCCTCTTTTTCTTTTCCCCAAAAGTTTGCTTAAACTAATATTCTTGGATCCTTTCTACCAATTAGTTTTTTTTTTTTTTTTTTTTAAAAAAAAACAACTAGATTTATAACTAGGGTTTATTTTAATTGAATGCAAACCCATTATTGGTATTTCATTCACTTACATAATTTTGTGGATATAAAGTTTTCAACCAATTTTGTCTGTGTCTTAAAATTTTATGTCTTAATCAGTTGAGTTATGTTCAAATTAATACCTACCAAAAATCATATGTGTTTATATATGGTTTGCTTGATGGAGTTTTTTTTACAATACGTGGAGTGAGGGAATTTGGAAGCATTATTAAACACCTTAATTATTATAGTAATAGCTCAAGATGGAATGAGATAATTAGATTCACAAAGGTTCACTAAATATATATGATTTAATTTACATTTTCACTTTTACTTTAGGTTATTTATCCATAGATGATAGATGAACCAGTTTGAGTTGCCAGTATGTCCATTTTGCAGATAGTATTTTAGCCACATGATCTTAACTTTTACTTCAAATATGAATGACATTTTGAATGTGTTGAGTCGTATTTAGGAGTGATTTGAATAATTTTGTCACGTTCTATGTCTTTAATCATACAAAATCAACTTACTACTTGATTTTACATTTCGATTACGATTTTCATTCAATTTAAATAGATTTTGAATATTGTTAAGAAAACATGTTTTAGAATGATTTAATTACAATTATGCAAAGTTTTTTTTCTTCTTTCAAACTATAATTTATTATTATGATATTATGTAATTTGCAGGGAATATATTAGATGAAGGGACAAAGGAAAAGTGAAGAACTGGGAGAAGAAATTTGATAAGATCACTGACTGAATTGATCCCCCAAGGTTTAGCTATTTTTATTATCCTTTCAAGAATCATTAGCAAATCTTCTTTTTCTTCTTCCAAGAAGCAATATATATATATATATATATACATATATATATATATATATATATATATATATTATATTGTGGAGGGGGATAGAATTTCTATCAAATTCCATTAAAGCCAGTAGTACTTATGATCAGAGAGTTTTCATTTCCATTATGCCTTTTGAATTTTCAGCTTTTAAAAGCCTTTGATATCACAAAACTCTCAATGTACTTAATTTGCTGAGCTTTGTTATATGTGTGCATGCCTGATTTGTACTATTTTATCTTTCAATTTGTGCTTTGTTTGCCTCTTTCTATGCAACTTCTATTGTAAGAGATGCTTAATTAGCATTGATCAATGTTTGAATTATATATATTATATTAGTTCACCTGGAGAATAAAATTTAAATTAACTTAAA

mRNA sequence

ATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAACAAGGTGGTTCACCAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTCAGGGAGGTCAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGATTACTTCTACTAGTCAAACCAAAGGAGGGAATATATTAGATGAAGGGACAAAGGAAAAGTGAAGAACTGGGAGAAGAAATTTGATAAGATCACTGACTGAATTGATCCCCCAAGGTTTAGCTATTTTTATTATCCTTTCAAGAATCATTAGCAAATCTTCTTTTTCTTCTTCCAAGAAGCAATATATATATATATATATATACATATATATATATATATATATATATATATATTATATTGTGGAGGGGGATAGAATTTCTATCAAATTCCATTAAAGCCAGTAGTACTTATGATCAGAGAGTTTTCATTTCCATTATGCCTTTTGAATTTTCAGCTTTTAAAAGCCTTTGATATCACAAAACTCTCAATGTACTTAATTTGCTGAGCTTTGTTATATGTGTGCATGCCTGATTTGTACTATTTTATCTTTCAATTTGTGCTTTGTTTGCCTCTTTCTATGCAACTTCTATTGTAAGAGATGCTTAATTAGCATTGATCAATGTTTGAATTATATATATTATATTAGTTCACCTGGAGAATAAAATTTAAATTAACTTAAA

Coding sequence (CDS)

ATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAACAAGGTGGTTCACCAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTCAGGGAGGTCAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGATTACTTCTACTAGTCAAACCAAAGGAGGGAATATATTAGATGAAGGGACAAAGGAAAAGTGA

Protein sequence

MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGNILDEGTKEK

Homology

[Close]

BLAST of Lsi11G015730 vs. Swiss-Prot
Match: LSH10_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.2e-38
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GG PETNPFASGAIRVYLREVRE
Sbjct: 79  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRE 138

Query: 61  CQAKARGIPYKKKKKKITSTSQTKGG 87
           CQAKARGIPYKKKKKK   T +  GG
Sbjct: 139 CQAKARGIPYKKKKKK-KPTPEMGGG 163

[Close]

BLAST of Lsi11G015730 vs. Swiss-Prot
Match: G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica GN=G1L7 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-32
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 2   FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVREC 61
           FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEE GG+PE+NPFA+ A+R+YLREVR+ 
Sbjct: 86  FYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDS 145

Query: 62  QAKARGIPYKKKKKKITSTSQTKG 86
           QAKARGIPY+KKK+K +  +Q  G
Sbjct: 146 QAKARGIPYEKKKRKRSQAAQPAG 169

[Close]

BLAST of Lsi11G015730 vs. Swiss-Prot
Match: G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-32
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 2   FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVREC 61
           FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEE GG+PE+NPFA+ A+R+YLREVR+ 
Sbjct: 86  FYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDS 145

Query: 62  QAKARGIPYKKKKKKITSTSQTKG 86
           QAKARGIPY+KKK+K +  +Q  G
Sbjct: 146 QAKARGIPYEKKKRKRSQAAQPAG 169

[Close]

BLAST of Lsi11G015730 vs. Swiss-Prot
Match: LSH9_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana GN=LSH9 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-31
Identity = 63/79 (79.75%), Postives = 74/79 (93.67%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQ-GGSPETNPFASGAIRVYLREVR 60
           +F+GQP+PP PCTCPL+QAWGSLDALIGRLRAAYEE  GGSP+TNPFA+G+IRV+LREVR
Sbjct: 91  VFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVR 150

Query: 61  ECQAKARGIPYKKKKKKIT 79
           E QAKARGIPY+KKK++ T
Sbjct: 151 ESQAKARGIPYRKKKRRKT 169

[Close]

BLAST of Lsi11G015730 vs. Swiss-Prot
Match: G1L8_ORYSJ (Protein G1-like8 OS=Oryza sativa subsp. japonica GN=G1L8 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-31
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 2   FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVREC 61
           +YGQP PPAPC CPLRQAWGSLDALIGRLRAAYEE G +PE+NPFA+ A+R+YLREVR+ 
Sbjct: 85  YYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDA 144

Query: 62  QAKARGIPYKKKKKKITSTSQ 83
           QAKARGIPY+KKK+K T   Q
Sbjct: 145 QAKARGIPYEKKKRKRTQQQQ 165

[Close]

BLAST of Lsi11G015730 vs. TrEMBL
Match: V4P135_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017308mg PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-37
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREVRE
Sbjct: 79  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRE 138

Query: 61  CQAKARGIPYKKKKKKITSTSQTKGGN 88
           CQAKARGIPYKKKKKK  +T    GG+
Sbjct: 139 CQAKARGIPYKKKKKKKPTTEMGGGGD 165

[Close]

BLAST of Lsi11G015730 vs. TrEMBL
Match: M5WSR1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012217mg PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-37
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREVRE
Sbjct: 85  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRE 144

Query: 61  CQAKARGIPYKKKKKKITSTSQTKGGN 88
           CQAKARGIPYKKKKKK    S +KGGN
Sbjct: 145 CQAKARGIPYKKKKKK---PSPSKGGN 168

[Close]

BLAST of Lsi11G015730 vs. TrEMBL
Match: A0A0A0K2D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G048120 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-37
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGS ETNPFASGAIRVYLR+VRE
Sbjct: 87  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQETNPFASGAIRVYLRDVRE 146

Query: 61  CQAKARGIPYKKKKKKITSTSQTKGGNILDE 92
           CQAKARGIPYKKKKKK T+ SQTKG    D+
Sbjct: 147 CQAKARGIPYKKKKKK-TTISQTKGSGGHDD 176

[Close]

BLAST of Lsi11G015730 vs. TrEMBL
Match: A0A078J0L4_BRANA (BnaA05g34250D protein OS=Brassica napus GN=BnaA05g34250D PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.2e-37
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREVRE
Sbjct: 79  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRE 138

Query: 61  CQAKARGIPYKKKKKKITSTSQTKG 86
           CQAKARGIP+KKKKKK T+T    G
Sbjct: 139 CQAKARGIPFKKKKKKPTTTEMGGG 163

[Close]

BLAST of Lsi11G015730 vs. TrEMBL
Match: M4CKH6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.2e-37
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREVRE
Sbjct: 68  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRE 127

Query: 61  CQAKARGIPYKKKKKKITSTSQTKG 86
           CQAKARGIP+KKKKKK T+T    G
Sbjct: 128 CQAKARGIPFKKKKKKPTTTEMGGG 152

[Close]

BLAST of Lsi11G015730 vs. TAIR10
Match: AT2G42610.1 (AT2G42610.1 Protein of unknown function (DUF640))

HSP 1 Score: 157.5 bits (397), Expect = 4.0e-39
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GG PETNPFASGAIRVYLREVRE
Sbjct: 79  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRE 138

Query: 61  CQAKARGIPYKKKKKKITSTSQTKGG 87
           CQAKARGIPYKKKKKK   T +  GG
Sbjct: 139 CQAKARGIPYKKKKKK-KPTPEMGGG 163

[Close]

BLAST of Lsi11G015730 vs. TAIR10
Match: AT4G18610.1 (AT4G18610.1 Protein of unknown function (DUF640))

HSP 1 Score: 137.1 bits (344), Expect = 5.6e-33
Identity = 63/79 (79.75%), Postives = 74/79 (93.67%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQ-GGSPETNPFASGAIRVYLREVR 60
           +F+GQP+PP PCTCPL+QAWGSLDALIGRLRAAYEE  GGSP+TNPFA+G+IRV+LREVR
Sbjct: 91  VFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVR 150

Query: 61  ECQAKARGIPYKKKKKKIT 79
           E QAKARGIPY+KKK++ T
Sbjct: 151 ESQAKARGIPYRKKKRRKT 169

[Close]

BLAST of Lsi11G015730 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-31
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1


Query: 2   FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVREC 61
           F+G P PPAPC CPLRQAWGSLDALIGRLRAA+EE GGSPETNPF + A+R+YLREVR+ 
Sbjct: 103 FFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDS 162

Query: 62  QAKARGIPYKKKKKK 77
           QAKARGI Y+KKK+K
Sbjct: 163 QAKARGISYEKKKRK 177

[Close]

BLAST of Lsi11G015730 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 129.8 bits (325), Expect = 9.0e-31
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 2   FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVREC 61
           ++G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEE GG P++NPFA+ A+R+YLREVRE 
Sbjct: 86  YFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRES 145

Query: 62  QAKARGIPYKKKKKKITSTSQT 84
           QAKARGIPY+KKK+K   T  T
Sbjct: 146 QAKARGIPYEKKKRKRPPTVTT 167

[Close]

BLAST of Lsi11G015730 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-30
Identity = 57/75 (76.00%), Postives = 66/75 (88.00%), Query Frame = 1


Query: 2   FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVREC 61
           FYG P PPAPC CPLRQAWGSLDALIGRLRAA+EE GG PETNPF + A+R+YLREVR+ 
Sbjct: 109 FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDM 168

Query: 62  QAKARGIPYKKKKKK 77
           Q+KARG+ Y+KKK+K
Sbjct: 169 QSKARGVSYEKKKRK 183

[Close]

BLAST of Lsi11G015730 vs. NCBI nr
Match: gi|659110586|ref|XP_008455303.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-38
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGS ETNPFASGAIRVYLR+VRE
Sbjct: 86  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSQETNPFASGAIRVYLRDVRE 145

Query: 61  CQAKARGIPYKKKKKKITSTSQTKGGNILDE 92
           CQAKARGIPYKKKKKK ++ +QTKGG   D+
Sbjct: 146 CQAKARGIPYKKKKKKTSTINQTKGGGHDDQ 176

[Close]

BLAST of Lsi11G015730 vs. NCBI nr
Match: gi|698425917|ref|XP_009786006.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Nicotiana sylvestris])

HSP 1 Score: 164.5 bits (415), Expect = 9.4e-38
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           +FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREV+E
Sbjct: 81  IFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVKE 140

Query: 61  CQAKARGIPYKKKKKKITSTSQTKG 86
           CQ+KARGIPYKKKKKKI  TS +KG
Sbjct: 141 CQSKARGIPYKKKKKKIGGTSDSKG 165

[Close]

BLAST of Lsi11G015730 vs. NCBI nr
Match: gi|595926982|ref|XP_007215057.1| (hypothetical protein PRUPE_ppa012217mg [Prunus persica])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-37
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREVRE
Sbjct: 85  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRE 144

Query: 61  CQAKARGIPYKKKKKKITSTSQTKGGN 88
           CQAKARGIPYKKKKKK    S +KGGN
Sbjct: 145 CQAKARGIPYKKKKKK---PSPSKGGN 168

[Close]

BLAST of Lsi11G015730 vs. NCBI nr
Match: gi|567215797|ref|XP_006411528.1| (hypothetical protein EUTSA_v10017308mg [Eutrema salsugineum])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-37
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREVRE
Sbjct: 79  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRE 138

Query: 61  CQAKARGIPYKKKKKKITSTSQTKGGN 88
           CQAKARGIPYKKKKKK  +T    GG+
Sbjct: 139 CQAKARGIPYKKKKKKKPTTEMGGGGD 165

[Close]

BLAST of Lsi11G015730 vs. NCBI nr
Match: gi|697100904|ref|XP_009593391.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Nicotiana tomentosiformis])

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-37
Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 1


Query: 1   MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRE 60
           +FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREV+E
Sbjct: 81  IFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVKE 140

Query: 61  CQAKARGIPYKKKKKKITSTSQTKG 86
           CQ+KARGIPYKKKKKKI  +S +KG
Sbjct: 141 CQSKARGIPYKKKKKKIGGSSDSKG 165

The following BLAST results are available for this feature:

BLAST of Lsi11G015730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH10_ARATH	7.2e-38	89.53	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=...	[more]
G1L7_ORYSJ	2.0e-32	75.00	Protein G1-like7 OS=Oryza sativa subsp. japonica GN=G1L7 PE=1 SV=1	[more]
G1L7_ORYSI	2.0e-32	75.00	Protein G1-like7 OS=Oryza sativa subsp. indica GN=OsI_10694 PE=3 SV=1	[more]
LSH9_ARATH	1.0e-31	79.75	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana GN=LSH9 PE=1 ...	[more]
G1L8_ORYSJ	1.3e-31	76.54	Protein G1-like8 OS=Oryza sativa subsp. japonica GN=G1L8 PE=1 SV=1	[more]

BLAST of Lsi11G015730 vs. TrEMBL


Match Name	E-value	Identity	Description
V4P135_EUTSA	1.1e-37	89.66	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017308mg PE=4 SV=1	[more]
M5WSR1_PRUPE	1.1e-37	91.95	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012217mg PE=4 SV=1	[more]
A0A0A0K2D1_CUCSA	2.5e-37	87.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G048120 PE=4 SV=1	[more]
A0A078J0L4_BRANA	4.2e-37	90.59	BnaA05g34250D protein OS=Brassica napus GN=BnaA05g34250D PE=4 SV=1	[more]
M4CKH6_BRARP	4.2e-37	90.59	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Lsi11G015730 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42610.1	4.0e-39	89.53	Protein of unknown function (DUF640)	[more]
AT4G18610.1	5.6e-33	79.75	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.1e-31	78.67	Protein of unknown function (DUF640)	[more]
AT1G07090.1	9.0e-31	70.73	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.2e-30	76.00	Protein of unknown function (DUF640)	[more]

BLAST of Lsi11G015730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110586\|ref\|XP_008455303.1\|	1.9e-38	86.81	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo]	[more]
gi\|698425917\|ref\|XP_009786006.1\|	9.4e-38	90.59	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Nicotiana sylvestri...	[more]
gi\|595926982\|ref\|XP_007215057.1\|	1.6e-37	91.95	hypothetical protein PRUPE_ppa012217mg [Prunus persica]	[more]
gi\|567215797\|ref\|XP_006411528.1\|	1.6e-37	89.66	hypothetical protein EUTSA_v10017308mg [Eutrema salsugineum]	[more]
gi\|697100904\|ref\|XP_009593391.1\|	2.7e-37	89.41	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Nicotiana tomentosi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015730.1	Lsi11G015730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 2..60 score: 1.5
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 1..74 score: 45
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 1..82 score: 4.9
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED	coord: 1..82 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G015730	MELO3C018723.2	Melon (DHL92) v3.6.1	lsimedB101
Lsi11G015730	Cla97C02G043610	Watermelon (97103) v2	lsiwmbB083
Lsi11G015730	Bhi10G000831	Wax gourd	lsiwgoB129
Lsi11G015730	Bhi05G001634	Wax gourd	lsiwgoB116
Lsi11G015730	Cp4.1LG05g15160	Cucurbita pepo (Zucchini)	cpelsiB606
Lsi11G015730	Cp4.1LG15g08330	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G015730	Cp4.1LG04g02970	Cucurbita pepo (Zucchini)	cpelsiB526
Lsi11G015730	CsGy7G004310	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G015730	Carg19134	Silver-seed gourd	carlsiB659
Lsi11G015730	CsaV3_7G005680	Cucumber (Chinese Long) v3	cuclsiB529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G015730	Watermelon (97103) v2	lsiwmbB101
Lsi11G015730	Wax gourd	lsiwgoB114
Lsi11G015730	Cucurbita moschata (Rifu)	cmolsiB080
Lsi11G015730	Wild cucumber (PI 183967)	cpilsiB505
Lsi11G015730	Cucumber (Chinese Long) v2	culsiB494
Lsi11G015730	Melon (DHL92) v3.5.1	lsimeB095
Lsi11G015730	Watermelon (Charleston Gray)	lsiwcgB114
Lsi11G015730	Watermelon (97103) v1	lsiwmB097