Lsi11G015140 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G015140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Wound-responsive family protein
Location	chr11 : 23570445 .. 23570702 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAACAAGAGCTTGGGTTGTAGCCACCACTGTGGGCGTCGTGGAAGCCTTAAAGGATCAAGGAATTTGCCGATGGAATCAAACCATTAGATCGGCGCATCAATACGCTAAAAATCATGTCAGATCGGTGCCTCAGGCCACCAGATTGACTGGCTCTTCCGCCGCCGTGGTTTCCGGCAAGCAACAGCAGAAGCAATCGGAAGAATCTTTTAGAACCGTCATGTATTTGAGCTGTTGGGGTCCCAATTAA

mRNA sequence

ATGAGTTCATCAACAAGAGCTTGGGTTGTAGCCACCACTGTGGGCGTCGTGGAAGCCTTAAAGGATCAAGGAATTTGCCGATGGAATCAAACCATTAGATCGGCGCATCAATACGCTAAAAATCATGTCAGATCGGTGCCTCAGGCCACCAGATTGACTGGCTCTTCCGCCGCCGTGGTTTCCGGCAAGCAACAGCAGAAGCAATCGGAAGAATCTTTTAGAACCGTCATGTATTTGAGCTGTTGGGGTCCCAATTAA

Coding sequence (CDS)

ATGAGTTCATCAACAAGAGCTTGGGTTGTAGCCACCACTGTGGGCGTCGTGGAAGCCTTAAAGGATCAAGGAATTTGCCGATGGAATCAAACCATTAGATCGGCGCATCAATACGCTAAAAATCATGTCAGATCGGTGCCTCAGGCCACCAGATTGACTGGCTCTTCCGCCGCCGTGGTTTCCGGCAAGCAACAGCAGAAGCAATCGGAAGAATCTTTTAGAACCGTCATGTATTTGAGCTGTTGGGGTCCCAATTAA

Protein sequence

MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTGSSAAVVSGKQQQKQSEESFRTVMYLSCWGPN

Homology

[Close]

BLAST of Lsi11G015140 vs. TrEMBL
Match: A0A0A0K296_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046660 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.4e-29
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60
          MSSS RAW+VA +VGVVEALKDQGICRWN TIRSAHQYAKNHVRSVPQATRLTGSSAAVV
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60

Query: 61 SGKQQQKQSEESFRT 76
          S KQQQKQSEES RT
Sbjct: 61 SSKQQQKQSEESLRT 75

[Close]

BLAST of Lsi11G015140 vs. TrEMBL
Match: A0A0D2RIR4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G205800 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTG-SSAAV 60
          MSS++RAW+VA ++G VEALKDQGICRWN T+RSA Q+AKNH+RS  QA  L+  SSAA+
Sbjct: 1  MSSTSRAWIVAASIGAVEALKDQGICRWNYTVRSAVQHAKNHMRSASQAKNLSSQSSAAI 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
            G +Q KQSEE+ RTVMYLSCWGPN
Sbjct: 61 SKGLRQSKQSEEALRTVMYLSCWGPN 86

[Close]

BLAST of Lsi11G015140 vs. TrEMBL
Match: A0A0D2N5Q5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G205900 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTG-SSAAV 60
          MSSS+RAW+VA ++G VEALKDQGICRWN T+RS  Q+AKNHVRS  QA  L+  SSAA+
Sbjct: 1  MSSSSRAWIVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
            G  + KQSEES RTVMYLSCWGPN
Sbjct: 61 SKGLNKSKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of Lsi11G015140 vs. TrEMBL
Match: A0A0D2PKH2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G206000 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.3e-25
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTG-SSAAV 60
          MSS++RAWVVA ++G VEALKDQGICRWN T+RS  Q+AKNHVRS  QA  L+  SSAA+
Sbjct: 1  MSSTSRAWVVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
            G  + KQSEES RTVMYLSCWGPN
Sbjct: 61 SKGLNKYKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of Lsi11G015140 vs. TrEMBL
Match: A0A0B0NEB0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15200 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-24
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTG-SSAAV 60
          MSS++RAW+ A ++G VEALKDQGICRWN T RS  Q+AKNHVRS  QA  L+  SSAA+
Sbjct: 1  MSSTSRAWIAAASIGAVEALKDQGICRWNYTARSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
            G  Q KQSEES RTVMYLSCWGPN
Sbjct: 61 SKGLLQSKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of Lsi11G015140 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-22
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQ-GICRWNQTIRSAHQYAKNHVRSVPQATRLTGSSAAV 60
          MSS+++ W+VA ++G VEALKDQ G+CRWN  IRSA+QY +N++RSV QA +L+ SS   
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSS--- 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
          +    + KQ+EES RTVMYLSCWGP+
Sbjct: 61 IDYTNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Lsi11G015140 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-22
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQ-GICRWNQTIRSAHQYAKNHVRSVPQATRLTGS--SA 60
          MSS+++AW VA ++G VEALKDQ G+CRWN  +RS +Q+ +N+VRSV Q  R + S  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 AVVSG--KQQQKQSEESFRTVMYLSCWGPN 86
          AV S    ++ K++EES RTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Lsi11G015140 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 1


Query: 7  AWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSV-----PQATRLTGSSAAVVS 66
          +W VAT +  VE LKDQG+ RWN   R  H+ A   VR++     P     + S+ ++ S
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 67 GKQQQKQSEESFRTVMYLSCWGP 85
                  E SF   M LSC+GP
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of Lsi11G015140 vs. NCBI nr
Match: gi|778723985|ref|XP_011658732.1| (PREDICTED: uncharacterized protein LOC101213259 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-36
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60
          MSSS RAW+VA +VGVVEALKDQGICRWN TIRSAHQYAKNHVRSVPQATRLTGSSAAVV
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S KQQQKQSEES RTVMYLSCWGPN
Sbjct: 61 SSKQQQKQSEESLRTVMYLSCWGPN 85

[Close]

BLAST of Lsi11G015140 vs. NCBI nr
Match: gi|659110683|ref|XP_008455356.1| (PREDICTED: uncharacterized protein LOC103495543 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60
          MSSS RAW+VA +VGVVEALKDQGICRWN TIRSAHQYA+NHVRSVPQATRLTGSSAAVV
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYARNHVRSVPQATRLTGSSAAVV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S K QQKQSEES RTVMYLSCWGPN
Sbjct: 61 SSKPQQKQSEESLRTVMYLSCWGPN 85

[Close]

BLAST of Lsi11G015140 vs. NCBI nr
Match: gi|700188345|gb|KGN43578.1| (hypothetical protein Csa_7G046660 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 9.2e-29
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60
          MSSS RAW+VA +VGVVEALKDQGICRWN TIRSAHQYAKNHVRSVPQATRLTGSSAAVV
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60

Query: 61 SGKQQQKQSEESFRT 76
          S KQQQKQSEES RT
Sbjct: 61 SSKQQQKQSEESLRT 75

[Close]

BLAST of Lsi11G015140 vs. NCBI nr
Match: gi|659110681|ref|XP_008455355.1| (PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-25
Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTGSSAAVV 60
          MS S + WVVA +VGVVEALKDQGICRWN TIRS  QYAKNHVRS+ QA +L+  SAA V
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SGKQQQKQSEESFRTVMYLSCWGPN 86
          S   + KQSEES RTVMYLSCWGPN
Sbjct: 61 S-DHRWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of Lsi11G015140 vs. NCBI nr
Match: gi|823159828|ref|XP_012479750.1| (PREDICTED: uncharacterized protein LOC105794909 [Gossypium raimondii])

HSP 1 Score: 122.9 bits (307), Expect = 2.8e-25
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1


Query: 1  MSSSTRAWVVATTVGVVEALKDQGICRWNQTIRSAHQYAKNHVRSVPQATRLTG-SSAAV 60
          MSS++RAW+VA ++G VEALKDQGICRWN T+RSA Q+AKNH+RS  QA  L+  SSAA+
Sbjct: 1  MSSTSRAWIVAASIGAVEALKDQGICRWNYTVRSAVQHAKNHMRSASQAKNLSSQSSAAI 60

Query: 61 VSGKQQQKQSEESFRTVMYLSCWGPN 86
            G +Q KQSEE+ RTVMYLSCWGPN
Sbjct: 61 SKGLRQSKQSEEALRTVMYLSCWGPN 86

The following BLAST results are available for this feature:

BLAST of Lsi11G015140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G015140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K296_CUCSA	6.4e-29	90.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046660 PE=4 SV=1	[more]
A0A0D2RIR4_GOSRA	1.9e-25	68.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G205800 PE=4 SV=1	[more]
A0A0D2N5Q5_GOSRA	1.9e-25	69.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G205900 PE=4 SV=1	[more]
A0A0D2PKH2_GOSRA	4.3e-25	69.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G206000 PE=4 SV=1	[more]
A0A0B0NEB0_GOSAR	2.1e-24	68.60	Uncharacterized protein OS=Gossypium arboreum GN=F383_15200 PE=4 SV=1	[more]

BLAST of Lsi11G015140 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	1.4e-22	58.14	Wound-responsive family protein	[more]
AT4G10270.1	4.0e-22	57.78	Wound-responsive family protein	[more]
AT4G33560.1	5.0e-09	37.35	Wound-responsive family protein	[more]

BLAST of Lsi11G015140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778723985\|ref\|XP_011658732.1\|	2.0e-36	91.76	PREDICTED: uncharacterized protein LOC101213259 [Cucumis sativus]	[more]
gi\|659110683\|ref\|XP_008455356.1\|	2.3e-35	89.41	PREDICTED: uncharacterized protein LOC103495543 [Cucumis melo]	[more]
gi\|700188345\|gb\|KGN43578.1\|	9.2e-29	90.67	hypothetical protein Csa_7G046660 [Cucumis sativus]	[more]
gi\|659110681\|ref\|XP_008455355.1\|	2.1e-25	72.94	PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo]	[more]
gi\|823159828\|ref\|XP_012479750.1\|	2.8e-25	68.60	PREDICTED: uncharacterized protein LOC105794909 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015140.1	Lsi11G015140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..84 score: 1.0
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..85 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G015140	Wax gourd	lsiwgoB116
Lsi11G015140	Wax gourd	lsiwgoB129
Lsi11G015140	Wax gourd	lsiwgoB130
Lsi11G015140	Bottle gourd (USVL1VR-Ls)	lsilsiB024
Lsi11G015140	Bottle gourd (USVL1VR-Ls)	lsilsiB048
Lsi11G015140	Bottle gourd (USVL1VR-Ls)	lsilsiB049
Lsi11G015140	Cucumber (Gy14) v1	cgylsiB021
Lsi11G015140	Cucumber (Gy14) v1	cgylsiB237
Lsi11G015140	Cucurbita maxima (Rimu)	cmalsiB091
Lsi11G015140	Cucurbita maxima (Rimu)	cmalsiB198
Lsi11G015140	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G015140	Cucurbita maxima (Rimu)	cmalsiB561
Lsi11G015140	Cucurbita maxima (Rimu)	cmalsiB785
Lsi11G015140	Cucurbita moschata (Rifu)	cmolsiB080
Lsi11G015140	Cucurbita moschata (Rifu)	cmolsiB188
Lsi11G015140	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G015140	Cucurbita moschata (Rifu)	cmolsiB544
Lsi11G015140	Cucurbita moschata (Rifu)	cmolsiB581
Lsi11G015140	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G015140	Cucurbita pepo (Zucchini)	cpelsiB526
Lsi11G015140	Cucurbita pepo (Zucchini)	cpelsiB606
Lsi11G015140	Wild cucumber (PI 183967)	cpilsiB011
Lsi11G015140	Wild cucumber (PI 183967)	cpilsiB430
Lsi11G015140	Wild cucumber (PI 183967)	cpilsiB505
Lsi11G015140	Cucumber (Chinese Long) v2	culsiB012
Lsi11G015140	Cucumber (Chinese Long) v2	culsiB494
Lsi11G015140	Melon (DHL92) v3.5.1	lsimeB090
Lsi11G015140	Melon (DHL92) v3.5.1	lsimeB095
Lsi11G015140	Melon (DHL92) v3.5.1	lsimeB119
Lsi11G015140	Watermelon (Charleston Gray)	lsiwcgB104
Lsi11G015140	Watermelon (Charleston Gray)	lsiwcgB089
Lsi11G015140	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G015140	Watermelon (97103) v1	lsiwmB093
Lsi11G015140	Watermelon (97103) v1	lsiwmB099
Lsi11G015140	Watermelon (97103) v1	lsiwmB100
Lsi11G015140	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G015140	Melon (DHL92) v3.6.1	lsimedB096
Lsi11G015140	Melon (DHL92) v3.6.1	lsimedB101
Lsi11G015140	Melon (DHL92) v3.6.1	lsimedB126
Lsi11G015140	Silver-seed gourd	carlsiB028
Lsi11G015140	Silver-seed gourd	carlsiB584
Lsi11G015140	Silver-seed gourd	carlsiB659
Lsi11G015140	Silver-seed gourd	carlsiB795
Lsi11G015140	Cucumber (Chinese Long) v3	cuclsiB009
Lsi11G015140	Cucumber (Chinese Long) v3	cuclsiB453
Lsi11G015140	Cucumber (Chinese Long) v3	cuclsiB529
Lsi11G015140	Watermelon (97103) v2	lsiwmbB073
Lsi11G015140	Watermelon (97103) v2	lsiwmbB086
Lsi11G015140	Watermelon (97103) v2	lsiwmbB092