Lsi11G014850 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G014850
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr11 : 23355819 .. 23359797 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGAGGCGAGGAGATAGAGAAGTATGGGTATTTTAGTAAATGTCTTATGGTTTTGGCGCTCAAGTTTTTTTGGGGTTGAAAAAGGAGGGATTCACGAAGTCGTCGTGATTTCGAGTTGGGCTATGAAATTCAGCCCATAGTTTGTGAGATTTCGGGCCGATTCTGATTTCTGACCCAAAATTCAACTGGATTGGGCCTTAATAATGGGCCCTCTGATATGGGCTTGTATTCGTTTCCCTTTTTTTCGGAGCCGATATGACCCAACTTTTCGAATCTTGAGTGTTGGTATTTGACATTCAATCCGAAATGAGGCAAATTATGGACAAAACTATATATTAAGCATGTTAGGTGGCAAGTTTGAATTCTATCAACTCTCATGTTTCAAAACTTTAAATTAGTAAATATGACCTAATAGATAAAGACACTAGTTACAATTCCCAACAAATTATAGTTGTTATATATAGATTTGGGCTCGGACAACTACGAGCATAATTCACTGTTATTTCATACGAATGTTCATTAAAAAAAAAAAATGAAGGTTGGACTGGTTAAAAAATAAAATAAAATACTTCTTTTAAAAAAGATGAATAATAAAAAACTTAGAGACTTGCTTGATGTTTGGTAAAGTTCATAGGCATATAAATATTGAACTAAAATTTTATATACTTATTAAAAAAACTATAGTTCAAGAATTTATTTAACACAAATTTTAAAATTTAGGGACTATATCTATTTTATTTGTTTAACCATCACGAGTAACCTAATTTGCAATACCTGATATTTAATATTCTACAAATTTTTAAAATTTGTATATATTATTGAATAATTAACTTAGTCAGAATCCAATGAATTACATAATAAATAGATTTTAGCAAACACAACAAAGGAAAGAAACAGAAAAGCAAAATATTAATATGGAGAATACAAAATTAGGAATAAACACTGAGTAACTTTAACACCCTCTCTCAAACTCAAGGTGGTAGAGTGATGATCAACTTGAGTTTGTGAAGCGATGGACCGATGAATGACATAAACTAAAAAGAACTTCCGAATTAAATCACGACATATATAGGCTGGAAACAAAGATTCTTATAGAAGATTTAAAACAGAACCCACGAATAACTTCTAGACTGGAAACAGATATCTAGATAGAGATCTAAAACAGGGCCTACAAAGAACCAATTTGAAACCGAATAAAGATCTACGAACGCATATTTGAAAACATAACACATAACATAACAGATACCCCAAAAGATCCAAAATTGAAACAGAGATTGAAACACATTAATGAAAAACAAATGACTAAATGGAAGAATCAACTAAGCATGATGAGTGGATCTAAACAGTTGAGGTGCTATACATATCTGGACGACGAGAGTGGGACTTGTGGTAGTGTACGAATTTGTGACAGAGGTAGAAATCGGGCAAAGCACCAATGCAGACTGAAAAATCTAGAGCTCTGATACCATGTGAATTTTGTATATAATATTGAATAATTAACTTAATCAAAATACAATGGATTACATAATAATTAAAATCCAAAAGAGACAACAAATGAAAGAAACATAAAAGGAAAATACTAATATGAATACAAAATTAGGAATAAATACTAAATAACTTTAACAATTTGTATTGTACAACCAGCACATTTTTCATAAAATTGGTCCAAGTGCATGCAAGCCGGTATGAAGACGGGCGTATATTAAACAAAAATCCATTTTATAATTCATAATTGTTTTTAATATTAAACAAAAATCCATTTTACAATTTTTTTTTTTTTTTTTTCTGGCTCCTACATATCCACAAGGTGCACGCAGCAAAACAAAAAGAAAATTTAGATGTCGTTGGAAGAGAGGAAAAAGGTCCATCTCAGTATATGTATATATAATTGACTTTTTTCTTCTTTTTGTTAGTACATAAAATTGATATCTGTATTAATTTAATTTGTTTTTAAAACACTAGCCAACTTTTGGCCTAAATCTGAAATCGTACGACGGTGGGTGTAAAAGAAATGCCATTTTCAGCGACGGCTTGAATCTCCTATTTATTTCTCCTCCGATGGCCAACTGTGTATGATATTTTCCAATCAGCAAAAGTTACCTTCAAAACATGAATGGCGCCGGCATCACTATCGCCATTGAGATCGTCCTGCAAATCATTAAAAAAATTCAAGATTTAAAATTATGCCTCTATGTTAAAATACTTATTTTCAATTTTTAAATCATTCAAAAGTTTAAGGGTAAATTACACTTTTGGTCTTTGAGGTTTTAAGTTTGATGTCTATTTAGTTCTTAAGGTTTCAAAAACAACATTCTAGTCCTTGAGATTTGAAAAATCATTTTAAATTGTCTCTAGAGTTAATTGACTGTTAGTTGACCGAAAGGATGATGTGGCAGTTAATTAGAAATGAGATTTTAATGATTTGTCACATTTAAAACGAGTTTGCAAAAAAATATTAATTTATATTATTTGTTTATCTTAATTATGCACATTTTCTCTTTTCTCTGAATCCATGCTTTGCTCCTGTTATTCTTTGTCTTCCCCCTCCTCCTTCACCATATTTTGCGCCATCGTGATAATTGTTGTCTTTGTCTGTAGCATCATCATCATTCTTCCATTCTCTAGAAACCAACTTATTAAAAAAAAAAATCGTATATTTCCTTAGACCTTACTTTCACTCCATCTCCTTTATTTTTCTCGCATTTTCTTTACTTACCACACTCTTCCAATCAGTCAATTCAATACAAATTATTCAAATAATAAAAAGGAAACATACTCCAATTTTGAAGTTAAATTTAGATTGACATAAATTACCCAACTATTACTACTAATTATTGGAAAAAAATAACACAACCAATAACATGATTATATTACTTAAAAATGATGAACATTGTTGATTTTTAGGGGTGAGCATCGGTCGGTTCTTGTTGGTTTTGGGATGTCTGGGACATCGGTCAACCCGCCCAACAAGCCTAACGAATTGGGGGAGAAAAAAAAAGAGAACGAGGAAGATATGTAAAAAAAAACATGAAAAAGAGAGAGGTTGGAGGAAGAAAAAAGAGGTGAAGAAGAAAATAAGAAAAAGGGAACATGAAAACGAAATAATCAAGATTAAGAAGAAAAAAATGAAGAAGAAATGGAGAAAGAGAGAGAGAGGGTTTCATTTGAGAGGGAAAAACAAGGAAATGGAGAAGAAGAGAAATGAAGAAAGAGATGGAGAAGAGAGAGGGAGTGGCTAAGAGTCAGCCAACAAAGCATGTTTTCCAAGTCATTCCTCTTTGAGATAGGGGTTAACCATATGTGGCTATGAGTTAGCTGAATTAGGCATCACATTTTCCCTCACTAAAAGAAGCCCAACACAATTTTGATTGTTCGTAAATAATTTTGAAAACCAAACCATCATAATTTGTCAATATTTTGAATTCTTCCAAAATGTCTTCACAAAAACCTGTCTGACTTGTCCAAGTCTCAGCAAGAAGACAACCAATAAAGCATCAAATTACACATCTTTTTCCTCATCTTTTACCAATCATGGACTTGGACATGAAGAAACTACAAGACATTTTATTTGTTGAATTGGAGAAGAACATGTATGGATTGTGTTTCACTAGCTCATTCGTTATCCTTACCTTCTTTATGAGTGAATTCATGTTCGCTCACTTCCTATCTATTCTACTACTCATAAATATTAGAAGGAAACGGCTTCAGATACAATCATGGCTAGTGTTGTGTGCCAAGTTCACAGTGGAATAATAGAGAAAATAGCACCATGCAGAGGATATGTTCAAGGGGAAGTTAAATGTAAGGTGCAAGTAAAGAAGCTAAAACTCAACTGGTCTCTCCCATGTTGGTCTATAGCACCAAGGATCAATCTTCGGACTTCGGCATATGAGATGACTACAATCGAACCAAAGGTAACTATGTTTAGGGATGTACATCTTTCTTCTATCATATATTCTGAAGCTGTGACATAG

mRNA sequence

ATGAGAGGAGGCGAGGAGATAGAGAAGTATGGGGGTGAGCATCGGTCGGTTCTTGTTGGTTTTGGGATGTCTGGGACATCGAAGGAAACGGCTTCAGATACAATCATGGCTAGTGTTGTGTGCCAAGTTCACAGTGGAATAATAGAGAAAATAGCACCATGCAGAGGATATGTTCAAGGGGAAGTTAAATGTAAGGTGCAAGTAAAGAAGCTAAAACTCAACTGGTCTCTCCCATGTTGGTCTATAGCACCAAGGATCAATCTTCGGACTTCGGCATATGAGATGACTACAATCGAACCAAAGGTAACTATGTTTAGGGATGTACATCTTTCTTCTATCATATATTCTGAAGCTGTGACATAG

Coding sequence (CDS)

ATGAGAGGAGGCGAGGAGATAGAGAAGTATGGGGGTGAGCATCGGTCGGTTCTTGTTGGTTTTGGGATGTCTGGGACATCGAAGGAAACGGCTTCAGATACAATCATGGCTAGTGTTGTGTGCCAAGTTCACAGTGGAATAATAGAGAAAATAGCACCATGCAGAGGATATGTTCAAGGGGAAGTTAAATGTAAGGTGCAAGTAAAGAAGCTAAAACTCAACTGGTCTCTCCCATGTTGGTCTATAGCACCAAGGATCAATCTTCGGACTTCGGCATATGAGATGACTACAATCGAACCAAAGGTAACTATGTTTAGGGATGTACATCTTTCTTCTATCATATATTCTGAAGCTGTGACATAG

Protein sequence

MRGGEEIEKYGGEHRSVLVGFGMSGTSKETASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVTMFRDVHLSSIIYSEAVT
Homology
[Close]
BLAST of Lsi11G014850 vs. NCBI nr
Match: gi|659110762|ref|XP_008455397.1| (PREDICTED: beta-amylase-like isoform X1 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 4.8e-23
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 

Query: 31  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRT 90
           ASDTIMAS VCQVHSGII++IA    + QG+VKCKVQVK LKLNWSLPCWS APRINLRT
Sbjct: 2   ASDTIMASFVCQVHSGIIKRIA----HGQGDVKCKVQVKNLKLNWSLPCWSRAPRINLRT 61

Query: 91  SAYEMTTIEPKVT 104
            AYEMTTIEP+V+
Sbjct: 62  PAYEMTTIEPEVS 70

[Close]
BLAST of Lsi11G014850 vs. NCBI nr
Match: gi|778723865|ref|XP_011658712.1| (PREDICTED: beta-amylase isoform X1 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 3.1e-22
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 31  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRT 90
           ASDTIMAS VCQVHSGII++IA    +VQGEVKCK+QVK LK NWSLPCWSIAPRINLRT
Sbjct: 2   ASDTIMASFVCQVHSGIIKRIA----HVQGEVKCKLQVKNLKPNWSLPCWSIAPRINLRT 61

Query: 91  SAYEMTTIEPKVT 104
            AYE TTIE +V+
Sbjct: 62  PAYETTTIEQEVS 70

The following BLAST results are available for this feature:
BLAST of Lsi11G014850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi11G014850 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi11G014850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi11G014850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110762|ref|XP_008455397.1|4.8e-2379.45PREDICTED: beta-amylase-like isoform X1 [Cucumis melo][more]
gi|778723865|ref|XP_011658712.1|3.1e-2278.08PREDICTED: beta-amylase isoform X1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G014850.1Lsi11G014850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G014850Cla97C02G028050Watermelon (97103) v2lsiwmbB086
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G014850Melon (DHL92) v3.6.1lsimedB095
Lsi11G014850Melon (DHL92) v3.6.1lsimedB096
Lsi11G014850Melon (DHL92) v3.6.1lsimedB101
Lsi11G014850Melon (DHL92) v3.6.1lsimedB126
Lsi11G014850Silver-seed gourdcarlsiB028
Lsi11G014850Silver-seed gourdcarlsiB307
Lsi11G014850Silver-seed gourdcarlsiB584
Lsi11G014850Silver-seed gourdcarlsiB659
Lsi11G014850Silver-seed gourdcarlsiB795
Lsi11G014850Cucumber (Chinese Long) v3cuclsiB009
Lsi11G014850Cucumber (Chinese Long) v3cuclsiB110
Lsi11G014850Cucumber (Chinese Long) v3cuclsiB453
Lsi11G014850Cucumber (Chinese Long) v3cuclsiB529
Lsi11G014850Watermelon (97103) v2lsiwmbB073
Lsi11G014850Watermelon (97103) v2lsiwmbB089
Lsi11G014850Watermelon (97103) v2lsiwmbB092
Lsi11G014850Wax gourdlsiwgoB131
Lsi11G014850Wax gourdlsiwgoB118
Lsi11G014850Wax gourdlsiwgoB127
Lsi11G014850Wax gourdlsiwgoB130
Lsi11G014850Bottle gourd (USVL1VR-Ls)lsilsiB022
Lsi11G014850Bottle gourd (USVL1VR-Ls)lsilsiB048
Lsi11G014850Bottle gourd (USVL1VR-Ls)lsilsiB049
Lsi11G014850Cucumber (Gy14) v1cgylsiB021
Lsi11G014850Cucumber (Gy14) v1cgylsiB072
Lsi11G014850Cucumber (Gy14) v1cgylsiB237
Lsi11G014850Cucurbita maxima (Rimu)cmalsiB091
Lsi11G014850Cucurbita maxima (Rimu)cmalsiB198
Lsi11G014850Cucurbita maxima (Rimu)cmalsiB472
Lsi11G014850Cucurbita maxima (Rimu)cmalsiB513
Lsi11G014850Cucurbita maxima (Rimu)cmalsiB561
Lsi11G014850Cucurbita maxima (Rimu)cmalsiB785
Lsi11G014850Cucurbita moschata (Rifu)cmolsiB080
Lsi11G014850Cucurbita moschata (Rifu)cmolsiB188
Lsi11G014850Cucurbita moschata (Rifu)cmolsiB457
Lsi11G014850Cucurbita moschata (Rifu)cmolsiB499
Lsi11G014850Cucurbita moschata (Rifu)cmolsiB544
Lsi11G014850Cucurbita moschata (Rifu)cmolsiB581
Lsi11G014850Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G014850Cucurbita pepo (Zucchini)cpelsiB233
Lsi11G014850Cucurbita pepo (Zucchini)cpelsiB526
Lsi11G014850Cucurbita pepo (Zucchini)cpelsiB606
Lsi11G014850Wild cucumber (PI 183967)cpilsiB011
Lsi11G014850Wild cucumber (PI 183967)cpilsiB099
Lsi11G014850Wild cucumber (PI 183967)cpilsiB430
Lsi11G014850Wild cucumber (PI 183967)cpilsiB505
Lsi11G014850Cucumber (Chinese Long) v2culsiB012
Lsi11G014850Cucumber (Chinese Long) v2culsiB099
Lsi11G014850Cucumber (Chinese Long) v2culsiB494
Lsi11G014850Melon (DHL92) v3.5.1lsimeB088
Lsi11G014850Melon (DHL92) v3.5.1lsimeB090
Lsi11G014850Melon (DHL92) v3.5.1lsimeB095
Lsi11G014850Melon (DHL92) v3.5.1lsimeB119
Lsi11G014850Watermelon (Charleston Gray)lsiwcgB104
Lsi11G014850Watermelon (Charleston Gray)lsiwcgB089
Lsi11G014850Watermelon (Charleston Gray)lsiwcgB097
Lsi11G014850Watermelon (Charleston Gray)lsiwcgB100
Lsi11G014850Watermelon (97103) v1lsiwmB093
Lsi11G014850Watermelon (97103) v1lsiwmB099
Lsi11G014850Watermelon (97103) v1lsiwmB100
Lsi11G014850Watermelon (97103) v1lsiwmB102
Lsi11G014850Cucumber (Gy14) v2cgyblsiB092
Lsi11G014850Cucumber (Gy14) v2cgyblsiB462