Lsi11G012570 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi11G012570
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr11 : 21194039 .. 21195271 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTAACCCTAAAGAATTTTCTTAATTAATTAGCAAAATTAATGGCTTGGTTATTTCTTGGTTTTCTCTTTCTCTTTTTAATTTCTTCTACTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATGTAAAAATAAATAAATAATATTTTTAGTTACCTTTCTTTGAATAATAATTGCATTAAGATTTTGTTATAATTAATATGGGTTGGTTTATCTTATCCATTTGGAACAGATGGAGGAGCATGTGGTTATGGCAATATGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTACAGACAAGGAGCTGGTTGTGGCGCTTGCTATCAGGTCATTATTTCCTTTTCTTTTCATTTCTATTTCTTTTTATTTTATTTTTTAGTACGAAAGTGAAAGCGAAAGTGTAAATTGGAGATCGAACCTCCGACTTTAAGGAAAGTTATATAGATTTTTTTATGAAAAGTTGACAACTAATTACTAGCTATAGTGTATATTAAAGGGTAGTATATTAAATTTTCGTCGATATATCGGTATTTTCTTAAGTTCATAGATTCGACATTTACATAAGGGATGAATCGATATTTCTATTATATTGTGAAAAAATCAATGAAACATAATAATAATAATAATAATAATAATAACACCACCATATAACCAAATATAATATAAATAATAAACATTTTAATTTATAGCAAAGTATAAAAGATATTTACAAGTATAGAAATATTTTACTGTCTATCAACGATATACCACGACAGACTATAAATTTTTTCTATATTTGTAAATAGTTTGATATTTTTTATGTTTATAATAATTTCTCAAATATTTATTTAGTAATTTAAATAATTTTTAAAATTCCTTTTCGTTTTTATTAATTTTTCATAAATATTCATCAATATCGACATATTATATCAATATTTTTATCGATATTTTTATAAAATTGAAATCTCAATATTTTCATGGATATCGACATTTCAAACCTTATTATTAATTTTTTTTTTTAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCGTAGGGGCTAAAGTGGTATTGACAGATCAAAATAACGATAACGTGACAGATCTTGTTCTTAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGTAG

mRNA sequence

AATTAACCCTAAAGAATTTTCTTAATTAATTAGCAAAATTAATGGCTTGGTTATTTCTTGGTTTTCTCTTTCTCTTTTTAATTTCTTCTACTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGAGCATGTGGTTATGGCAATATGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTACAGACAAGGAGCTGGTTGTGGCGCTTGCTATCAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGTAG

Coding sequence (CDS)

ATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGAGCATGTGGTTATGGCAATATGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTACAGACAAGGAGCTGGTTGTGGCGCTTGCTATCAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGTAG

Protein sequence

MLVIVVFINLKLATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
BLAST of Lsi11G012570 vs. TrEMBL
Match: A0A0A0K2Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019890 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-07
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYK 87
           CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGVVDVEYK
Sbjct: 84  CNTIGTKVVLTD---QNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYK 134

BLAST of Lsi11G012570 vs. TrEMBL
Match: A0A0A0K0R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019850 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN++   + L      + + V  L +S +AFFTMALNGKG+DLLNLGVVDVEYKR
Sbjct: 84  CNTVGTKVVLTD---QNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKR 135

BLAST of Lsi11G012570 vs. NCBI nr
Match: gi|659094116|ref|XP_008447892.1| (PREDICTED: expansin-like A2 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1

Query: 56  LAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Sbjct: 104 LVLSKRAFFTMALNGKGADLLNLGVVDVEYKR 135

BLAST of Lsi11G012570 vs. NCBI nr
Match: gi|700188076|gb|KGN43309.1| (hypothetical protein Csa_7G019890 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-07
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYK 87
           CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGVVDVEYK
Sbjct: 84  CNTIGTKVVLTD---QNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYK 134

BLAST of Lsi11G012570 vs. NCBI nr
Match: gi|778730065|ref|XP_004144934.2| (PREDICTED: expansin-like A2 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN++   + L      + + V  L +S +AFFTMALNGKG+DLLNLGVVDVEYKR
Sbjct: 86  CNTVGTKVVLTD---QNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKR 137

BLAST of Lsi11G012570 vs. NCBI nr
Match: gi|700188072|gb|KGN43305.1| (hypothetical protein Csa_7G019850 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN++   + L      + + V  L +S +AFFTMALNGKG+DLLNLGVVDVEYKR
Sbjct: 84  CNTVGTKVVLTD---QNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKR 135

BLAST of Lsi11G012570 vs. NCBI nr
Match: gi|659094104|ref|XP_008447886.1| (PREDICTED: expansin-like A1 isoform X1 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 8.6e-06
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1

Query: 33  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR 88
           CN++   + L      + + V  L +S++AFFTMAL+GKG+DLLNLGVVDVEYKR
Sbjct: 85  CNTVGTKVVLTD---QNNDNVTDLVLSQKAFFTMALSGKGSDLLNLGVVDVEYKR 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K2Q9_CUCSA3.2e-0761.11Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019890 PE=4 SV=1[more]
A0A0A0K0R8_CUCSA2.7e-0656.36Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019850 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659094116|ref|XP_008447892.1|2.7e-0793.75PREDICTED: expansin-like A2 [Cucumis melo][more]
gi|700188076|gb|KGN43309.1|4.5e-0761.11hypothetical protein Csa_7G019890 [Cucumis sativus][more]
gi|778730065|ref|XP_004144934.2|3.8e-0656.36PREDICTED: expansin-like A2 [Cucumis sativus][more]
gi|700188072|gb|KGN43305.1|3.8e-0656.36hypothetical protein Csa_7G019850 [Cucumis sativus][more]
gi|659094104|ref|XP_008447886.1|8.6e-0654.55PREDICTED: expansin-like A1 isoform X1 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005576 extracellular region
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G012570.1Lsi11G012570.1mRNA