Lsi11G012540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G012540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Expansin-like A1
Location	chr11 : 21170935 .. 21172464 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGGTTTCTCACCTTCCTCTTCTTGCTCGTCTCCTCTACGGCGGCTTCGTTTCCTCCCTGTAATCGTTGTGTTCATCAATCCAAAGCTGCTCATTATTACGAAGATTCACCTACTTCATGTAAAGATTTAGTTTTCTTTTCATTTCAATTGTACTTTTTGGAGGTTGACTAAGTTTTTACACCATTTATATATCATGAAAAGCTCATTTTTAATGGATGAATGATAAATGGCACTAATAAATTTATTTGTATGTGCTTGATTTGATGTAGATGGAGGTGCTTGTGGTTATGGAAATTTGGCATTGGAAATCTCTCAAGGATACTTTGCAGCTGCTGTCCCTTCCCTTTACAAGGGAGGAGCAGGTTGTGGCGCTTGCTATCAAGTATGAATCTTTGAACTAATACTTGGGTGCATCCTGAGCTACACTCATCTTTTTTCAGCCCACTCCAATGTAGAAAAAGCTCAAAAATATTTATAAAAAAAGGTTTGCTACATGGTAAACTGTGGTTGGACAATTGGGTGGACTGCAAAAAGATTGGTGCAACTCGTTGCACCCAACAATTTTCTTTTCCATCGATTTTCTTTCATTTGGGCAGTTTTTTTTTCCTTAAAACATTATTGATTGTGTTAGAGAATCGTTTGATCTTTTATAGGTAAGATGCAAGGACAAACGTCTATGCAATACAGCAGGGACTAAAATAGTTTTAACTGATCAAAATAATGATAATAGAACAGATATTGTTCTTGGTAAGAAAGCTTTCTCTGCAATGGCTTTAAAAGGAAAAGGTCAACAACTCTTGAATACGGGACTCGTCGATGTAGAATATAAGAGGTGATCCAATACAATATTTTTTTTTCTTAGTACAGGAAGATTCGAACCGCAGACTCTCATCGTCACTAACACATGTTTTATGTCAATTAAGTTATGCTCGCTTCGGCGATCGAATACATGGGTTAATTACTGGCTTTGTGTTTTATAATTACTGTTCATGTAATTGCAGGATACCTTGTGAATACAAAAATAAAAATCTGTTGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAGGCAGTTAACATAGCACAGGTTCGACTAATTTTCATTCTAAGCACTTAAAAAGTCATTTCAAACATACTCTTAATATATATACCAAATTCAATGTTGATTAACTCTGTACGTACATAATATCGATTTTCGTAGGTTGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATCAATGCTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAATAACTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTCTGTGCTCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGGTGATGGACAATGGAAATAAAGAAAATAGACTGGGAATTCT

mRNA sequence

ATGCTTTGGTTTCTCACCTTCCTCTTCTTGCTCGTCTCCTCTACGGCGGCTTCGTTTCCTCCCTGTAATCGTTGTGTTCATCAATCCAAAGCTGCTCATTATTACGAAGATTCACCTACTTCATGTAAAGATTTAGTTTTCTTTTCATTTCAATTGATACCTTGTGAATACAAAAATAAAAATCTGTTGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAGGCAGTTAACATAGCACAGGTTGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATCAATGCTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAATAACTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTCTGTGCTCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGGTGATGGACAATGGAAATAAAGAAAATAGACTGGGAATTCT

Coding sequence (CDS)

ATGCTTTGGTTTCTCACCTTCCTCTTCTTGCTCGTCTCCTCTACGGCGGCTTCGTTTCCTCCCTGTAATCGTTGTGTTCATCAATCCAAAGCTGCTCATTATTACGAAGATTCACCTACTTCATGTAAAGATTTAGTTTTCTTTTCATTTCAATTGATACCTTGTGAATACAAAAATAAAAATCTGTTGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAGGCAGTTAACATAGCACAGGTTGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATCAATGCTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAATAACTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTCTGTGCTCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGGTGATGGACAATGGAAATAA

Protein sequence

MLWFLTFLFLLVSSTAASFPPCNRCVHQSKAAHYYEDSPTSCKDLVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDIAFEYCPPWQCGDGQWK

Homology

[Close]

BLAST of Lsi11G012540 vs. Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.7e-37
Identity = 73/138 (52.90%), Postives = 92/138 (66.67%), Query Frame = 1


Query: 44  DLVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWR 103
           D +   ++ IPC+YK+KNL + V E S +P  L IKFLYQGGQTDI AV++AQVG   WR
Sbjct: 142 DALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWR 201

Query: 104 PMKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAG-SVLPADWKNGEIYDTGVQIN 163
            M R YGP+W I+  P G LQ R V+T  YD GKW+WA   VLPA+W+ G++YDTG +I 
Sbjct: 202 FMTRVYGPVWSIDRAPNGPLQFRAVVTGGYD-GKWVWADREVLPANWQPGQVYDTGARIA 261

Query: 164 DIAFEYCPPWQCGDGQWK 181
           D+A E C    C    WK
Sbjct: 262 DVARESC--LDCATLDWK 276

[Close]

BLAST of Lsi11G012540 vs. Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.8e-35
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 1


Query: 50  FQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNY 109
           ++ +PCEY++++L V+V E S  P  L I FLYQGGQTDI AV++AQVG   W+ M R +
Sbjct: 151 YKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREH 210

Query: 110 GPIWDINAVPEGGLQLRMVITSRYDNGKWIWAG-SVLPADWKNGEIYDTGVQINDIAFEY 169
           GP W +   P G LQ+R+V+T  YD GKW+WA   VLP  W+ GE+YDTGVQI DIA E 
Sbjct: 211 GPSWSMANAPPGPLQMRLVVTGGYD-GKWVWADREVLPRRWRAGEVYDTGVQITDIAQEG 270

Query: 170 CPPWQCGDGQWK 181
           C P  C   +WK
Sbjct: 271 CFP--CDTHEWK 279

[Close]

BLAST of Lsi11G012540 vs. Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 68/128 (53.12%), Postives = 90/128 (70.31%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVG-LPKWR 104
           +V   +Q +PC+Y NKN+ V+V E S KP YL IK LYQGGQT++ +++IAQVG  P W 
Sbjct: 132 IVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWG 191

Query: 105 PMKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQIND 164
            M R++G +W  + VP G +Q R V+T  YD GK IW+ SVLP++W+ G+IYD GVQI D
Sbjct: 192 YMTRSHGAVWVTDKVPTGAIQFRFVVTGGYD-GKMIWSQSVLPSNWEAGKIYDAGVQITD 251

Query: 165 IAFEYCPP 172
           IA E C P
Sbjct: 252 IAQEGCDP 258

[Close]

BLAST of Lsi11G012540 vs. Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.3e-34
Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   ++ +PC+Y NK + V+V E S  P YLAIK LYQGGQT++ A+ IAQVG   W  
Sbjct: 133 IVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSY 192

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           M R++G +W  + VP G LQ R V+T+ YD GK +W+  VLPA+W+ G+ YD GVQI DI
Sbjct: 193 MTRSHGAVWVTDKVPNGALQFRFVVTAGYD-GKMVWSQRVLPANWEAGKSYDAGVQITDI 252

Query: 165 AFEYCPPWQCGDGQW 180
           A E C P  C D  W
Sbjct: 253 AQEGCDP--CDDHIW 264

[Close]

BLAST of Lsi11G012540 vs. Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.8e-33
Identity = 68/133 (51.13%), Postives = 86/133 (64.66%), Query Frame = 1


Query: 50  FQLIPCEYK-NKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRN 109
           ++ +PCEY   +NL ++V E S  P  L+I+FLYQGGQTDI AV++A VG   W+ M R+
Sbjct: 146 YKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRD 205

Query: 110 YGPIWDINAVPEGGLQLRMVITSRYDNGKWIWA-GSVLPADWKNGEIYDTGVQINDIAFE 169
           YGP W     P G LQ R+V+T  YD GKW+WA G VLP  W  G +YD GVQI D+A E
Sbjct: 206 YGPAWSTAQAPAGPLQFRVVVTGGYD-GKWVWADGEVLPRRWTAGRVYDAGVQIADVAQE 265

Query: 170 YCPPWQCGDGQWK 181
            C P  C   +WK
Sbjct: 266 GCYP--CDTQEWK 275

[Close]

BLAST of Lsi11G012540 vs. TrEMBL
Match: A0A0A0K2Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019840 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-45
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 85  GQTDIQAVNIAQVGLPKWRPMKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSV 144
           G T    +N  +VGLPKWRPMKRNYG IWDIN VP+GGLQLRMV+TSRYDNGKWIWAGSV
Sbjct: 145 GSTKNYILNPQKVGLPKWRPMKRNYGGIWDINGVPKGGLQLRMVVTSRYDNGKWIWAGSV 204

Query: 145 LPADWKNGEIYDTGVQINDIAFEYCPPWQC-GDGQWK 181
           LP+DWKNGEIYDTGVQINDIA+EYCPPWQC GDGQWK
Sbjct: 205 LPSDWKNGEIYDTGVQINDIAYEYCPPWQCGGDGQWK 241

[Close]

BLAST of Lsi11G012540 vs. TrEMBL
Match: A0A0B0P1I4_GOSAR (Expansin-like A1 OS=Gossypium arboreum GN=F383_05840 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.5e-43
Identity = 83/135 (61.48%), Postives = 99/135 (73.33%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   ++ IPCEYKN+NL ++V E SHKPYYLAIK LYQGGQT+I A+++AQVG   W  
Sbjct: 129 IVDVEYKRIPCEYKNQNLAIRVEESSHKPYYLAIKLLYQGGQTEIVAIDVAQVGSSNWSF 188

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           M RNYG +WD + VP G LQ R V+TS YD GKW+WA +VLPADWK G  YD+GVQI DI
Sbjct: 189 MTRNYGAVWDASRVPNGALQFRFVVTSGYD-GKWVWAKNVLPADWKIGVTYDSGVQITDI 248

Query: 165 AFEYCPPWQCGDGQW 180
           A E C P  C DG W
Sbjct: 249 AQEGCSP--CDDGNW 260

[Close]

BLAST of Lsi11G012540 vs. TrEMBL
Match: V4SA67_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029088mg PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   ++ +PCEYKN+NL V+V E S KP YLA+K LYQGGQT++ A+++AQVG   W  
Sbjct: 127 VVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGY 186

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           M RNYG +WD + VP G LQ R V+TS YD GKWIWA +VLPADWK G IY++GVQI DI
Sbjct: 187 MSRNYGAVWDTSRVPNGALQFRFVVTSGYD-GKWIWAKNVLPADWKPGMIYNSGVQITDI 246

Query: 165 AFEYCPPWQCGDGQWK 181
           A E C   +CGDG WK
Sbjct: 247 AKEGCSESECGDGSWK 261

[Close]

BLAST of Lsi11G012540 vs. TrEMBL
Match: A0A067FLN8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024895mg PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   ++ +PCEYKN+NL V+V E S KP YLA+K LYQGGQT++ A+++AQVG   W  
Sbjct: 127 VVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGY 186

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           M RNYG +WD + VP G LQ R V+TS YD GKWIWA +VLPADWK G IY++GVQI DI
Sbjct: 187 MSRNYGAVWDTSRVPNGALQFRFVVTSGYD-GKWIWAKNVLPADWKPGMIYNSGVQITDI 246

Query: 165 AFEYCPPWQCGDGQWK 181
           A E C   +CGDG WK
Sbjct: 247 AKEGCSESECGDGSWK 261

[Close]

BLAST of Lsi11G012540 vs. TrEMBL
Match: A0A067FLH7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024895mg PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   ++ +PCEYKN+NL V+V E S KP YLA+K LYQGGQT++ A+++AQVG   W  
Sbjct: 53  VVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGY 112

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           M RNYG +WD + VP G LQ R V+TS YD GKWIWA +VLPADWK G IY++GVQI DI
Sbjct: 113 MSRNYGAVWDTSRVPNGALQFRFVVTSGYD-GKWIWAKNVLPADWKPGMIYNSGVQITDI 172

Query: 165 AFEYCPPWQCGDGQWK 181
           A E C   +CGDG WK
Sbjct: 173 AKEGCSESECGDGSWK 187

[Close]

BLAST of Lsi11G012540 vs. TAIR10
Match: AT3G45970.1 (AT3G45970.1 expansin-like A1)

HSP 1 Score: 147.5 bits (371), Expect = 7.8e-36
Identity = 68/128 (53.12%), Postives = 90/128 (70.31%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVG-LPKWR 104
           +V   +Q +PC+Y NKN+ V+V E S KP YL IK LYQGGQT++ +++IAQVG  P W 
Sbjct: 132 IVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWG 191

Query: 105 PMKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQIND 164
            M R++G +W  + VP G +Q R V+T  YD GK IW+ SVLP++W+ G+IYD GVQI D
Sbjct: 192 YMTRSHGAVWVTDKVPTGAIQFRFVVTGGYD-GKMIWSQSVLPSNWEAGKIYDAGVQITD 251

Query: 165 IAFEYCPP 172
           IA E C P
Sbjct: 252 IAQEGCDP 258

[Close]

BLAST of Lsi11G012540 vs. TAIR10
Match: AT4G38400.1 (AT4G38400.1 expansin-like A2)

HSP 1 Score: 145.6 bits (366), Expect = 3.0e-35
Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   ++ +PC+Y NK + V+V E S  P YLAIK LYQGGQT++ A+ IAQVG   W  
Sbjct: 133 IVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSY 192

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           M R++G +W  + VP G LQ R V+T+ YD GK +W+  VLPA+W+ G+ YD GVQI DI
Sbjct: 193 MTRSHGAVWVTDKVPNGALQFRFVVTAGYD-GKMVWSQRVLPANWEAGKSYDAGVQITDI 252

Query: 165 AFEYCPPWQCGDGQW 180
           A E C P  C D  W
Sbjct: 253 AQEGCDP--CDDHIW 264

[Close]

BLAST of Lsi11G012540 vs. TAIR10
Match: AT3G45960.2 (AT3G45960.2 expansin-like A3)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   +Q +PC Y  +NL V+V E S KP YLAIK LYQGGQT++  ++IA VG  +W  
Sbjct: 132 IVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSY 191

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           M R++G +W  + VP G LQ +  +T  YD GK +W+  VLPA+W +G IYD GVQI DI
Sbjct: 192 MSRSHGAVWATDKVPTGALQFKFTVTGGYD-GKTVWSKRVLPANWNSGRIYDAGVQITDI 251

Query: 165 AFEYC 170
           A E C
Sbjct: 252 AQEGC 255

[Close]

BLAST of Lsi11G012540 vs. TAIR10
Match: AT4G17030.1 (AT4G17030.1 expansin-like B1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-19
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   +Q IPC Y   NL+ ++ E S+ P+YLAI  LY GG  DI AV + Q    +WR 
Sbjct: 134 VVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRR 193

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNG--KWIWAGSVLPADWKNGEIYDTGV 160
           M+R +G + D+   P G L LR ++   Y +    WI + + +PADW  G  YD+ +
Sbjct: 194 MRRVFGAVHDLQNPPRGTLTLRFLV---YGSAGINWIQSPNAIPADWTAGATYDSNI 247

[Close]

BLAST of Lsi11G012540 vs. TAIR10
Match: AT1G65680.1 (AT1G65680.1 expansin B2)

HSP 1 Score: 57.8 bits (138), Expect = 8.2e-09
Identity = 30/111 (27.03%), Postives = 58/111 (52.25%), Query Frame = 1


Query: 50  FQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQ-VGLPKWRPMKRN 109
           ++ + C Y  K +  QV + S+   + A+   Y  G  +I  + + Q +   KW  M ++
Sbjct: 163 YKKVECNYIGKTVTFQVDKGSNANSF-AVLVAYVNGDGEIGRIELKQALDSDKWLSMSQS 222

Query: 110 YGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGV 160
           +G +W ++        L + +TS  ++GK + A +V+PA+W+ G IY + V
Sbjct: 223 WGAVWKLDVSSPLRAPLSLRVTS-LESGKTVVASNVIPANWQPGAIYKSNV 271

[Close]

BLAST of Lsi11G012540 vs. NCBI nr
Match: gi|449454380|ref|XP_004144933.1| (PREDICTED: expansin-like A1 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 1.3e-72
Identity = 124/137 (90.51%), Postives = 130/137 (94.89%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           LV   ++ IPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP
Sbjct: 132 LVDIEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 191

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           MKRNYG IWDIN VP+GGLQLRMV+TSRYDNGKWIWAGSVLP+DWKNGEIYDTGVQINDI
Sbjct: 192 MKRNYGGIWDINGVPKGGLQLRMVVTSRYDNGKWIWAGSVLPSDWKNGEIYDTGVQINDI 251

Query: 165 AFEYCPPWQC-GDGQWK 181
           A+EYCPPWQC GDGQWK
Sbjct: 252 AYEYCPPWQCGGDGQWK 268

[Close]

BLAST of Lsi11G012540 vs. NCBI nr
Match: gi|659094110|ref|XP_008447889.1| (PREDICTED: expansin-like A1 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 2.4e-71
Identity = 121/132 (91.67%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 50  FQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNY 109
           ++ IPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIA+VGLPKWRPMKRNY
Sbjct: 137 YKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAKVGLPKWRPMKRNY 196

Query: 110 GPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDIAFEYC 169
           G IWDIN VPEGGLQLRMV+TSRYDNGKWIWAGSVLP+ WKNGEIYDTGVQINDIA+EYC
Sbjct: 197 GAIWDINGVPEGGLQLRMVVTSRYDNGKWIWAGSVLPSGWKNGEIYDTGVQINDIAYEYC 256

Query: 170 PPWQC-GDGQWK 181
           PPWQC GDGQWK
Sbjct: 257 PPWQCGGDGQWK 268

[Close]

BLAST of Lsi11G012540 vs. NCBI nr
Match: gi|659094116|ref|XP_008447892.1| (PREDICTED: expansin-like A2 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 6.6e-53
Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   ++ + CEYK+KNLLVQV E+S+ P+YLAIKFLYQGGQTD+ AV+IAQVG  +W  
Sbjct: 128 VVDVEYKRVACEYKHKNLLVQVEEFSYNPFYLAIKFLYQGGQTDMVAVDIAQVGTSEWSH 187

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           MKR+YG +W+IN +PEG LQLRMV+TS YD GKW+WA SVLPADWK+G IYDTGVQINDI
Sbjct: 188 MKRSYGAVWEINNIPEGSLQLRMVVTSGYD-GKWVWAKSVLPADWKSGAIYDTGVQINDI 247

Query: 165 AFEYCPPWQCGDGQWK 181
           A E CPPWQCGD  WK
Sbjct: 248 AKESCPPWQCGDKPWK 262

[Close]

BLAST of Lsi11G012540 vs. NCBI nr
Match: gi|659094529|ref|XP_008448110.1| (PREDICTED: expansin-like A1 [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 7.6e-49
Identity = 85/136 (62.50%), Postives = 106/136 (77.94%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRP 104
           +V   ++ +PC YKNKNLLV++ EWS+KPYYLA+KFLYQGGQT+I++V+IAQVG   W  
Sbjct: 190 MVDIEYKRVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKSVDIAQVGRSDWEG 249

Query: 105 MKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDI 164
           +KRNYG IWD + VPEG LQLR+V+TS YDN  WIW    +PADWK+GE YDTG+QI +I
Sbjct: 250 LKRNYGAIWDTSKVPEGALQLRLVVTSGYDNENWIWTNYEIPADWKSGETYDTGIQIEEI 309

Query: 165 AFEYCPPWQCGDGQWK 181
           A E C P +CGD  WK
Sbjct: 310 AKESCSPRECGDRIWK 325

[Close]

BLAST of Lsi11G012540 vs. NCBI nr
Match: gi|659094104|ref|XP_008447886.1| (PREDICTED: expansin-like A1 isoform X1 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-46
Identity = 88/137 (64.23%), Postives = 107/137 (78.10%), Query Frame = 1


Query: 45  LVFFSFQLIPCEYKN-KNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWR 104
           +V   ++ +PCEY N +NLLV+V E S+ P+ LAIKFLYQGGQT++ AV+IAQVG   W 
Sbjct: 129 VVDVEYKRVPCEYPNYRNLLVRVEESSYNPFKLAIKFLYQGGQTEMVAVDIAQVGTSDWS 188

Query: 105 PMKRNYGPIWDINAVPEGGLQLRMVITSRYDNGKWIWAGSVLPADWKNGEIYDTGVQIND 164
            MKR+YG +W+ + VPEG LQLRMV+TS YD GKW+WA SVLPA+W+ G IYDTGVQI D
Sbjct: 189 HMKRSYGAVWETDNVPEGALQLRMVVTSGYD-GKWVWAKSVLPANWRAGAIYDTGVQIKD 248

Query: 165 IAFEYCPPWQCGDGQWK 181
           IA E CPPWQCGD  WK
Sbjct: 249 IAKESCPPWQCGDNPWK 264

The following BLAST results are available for this feature:

BLAST of Lsi11G012540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXLA3_ORYSJ	8.7e-37	52.90	Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1	[more]
EXLA1_ORYSJ	4.8e-35	53.03	Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1	[more]
EXLA1_ARATH	1.4e-34	53.13	Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1	[more]
EXLA2_ARATH	5.3e-34	50.37	Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1	[more]
EXLA2_ORYSJ	5.8e-33	51.13	Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1	[more]

BLAST of Lsi11G012540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2Q2_CUCSA	1.6e-45	83.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019840 PE=3 SV=1	[more]
A0A0B0P1I4_GOSAR	2.5e-43	61.48	Expansin-like A1 OS=Gossypium arboreum GN=F383_05840 PE=3 SV=1	[more]
V4SA67_9ROSI	1.3e-42	59.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029088mg PE=3 SV=1	[more]
A0A067FLN8_CITSI	1.3e-42	59.56	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024895mg PE=3 SV=1	[more]
A0A067FLH7_CITSI	1.3e-42	59.56	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024895mg PE=3 SV=1	[more]

BLAST of Lsi11G012540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45970.1	7.8e-36	53.13	expansin-like A1	[more]
AT4G38400.1	3.0e-35	50.37	expansin-like A2	[more]
AT3G45960.2	1.2e-33	50.40	expansin-like A3	[more]
AT4G17030.1	2.3e-19	38.46	expansin-like B1	[more]
AT1G65680.1	8.2e-09	27.03	expansin B2	[more]

BLAST of Lsi11G012540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454380\|ref\|XP_004144933.1\|	1.3e-72	90.51	PREDICTED: expansin-like A1 [Cucumis sativus]	[more]
gi\|659094110\|ref\|XP_008447889.1\|	2.4e-71	91.67	PREDICTED: expansin-like A1 [Cucumis melo]	[more]
gi\|659094116\|ref\|XP_008447892.1\|	6.6e-53	69.85	PREDICTED: expansin-like A2 [Cucumis melo]	[more]
gi\|659094529\|ref\|XP_008448110.1\|	7.6e-49	62.50	PREDICTED: expansin-like A1 [Cucumis melo]	[more]
gi\|659094104\|ref\|XP_008447886.1\|	1.6e-46	64.23	PREDICTED: expansin-like A1 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007117	Expansin_CBD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G012540.1	Lsi11G012540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007117	Expansin, cellulose-binding-like domain	GENE3D	G3DSA:2.60.40.760		coord: 53..161 score: 1.9
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Pollen_allerg_1	coord: 68..146 score: 8.6
IPR007117	Expansin, cellulose-binding-like domain	PROFILE	PS50843	EXPANSIN_CBD	coord: 74..157 score: 19
IPR007117	Expansin, cellulose-binding-like domain	unknown	SSF49590	PHL pollen allergen	coord: 67..156 score: 1.22
None	No IPR available	PANTHER	PTHR31692	FAMILY NOT NAMED	coord: 53..163 score: 3.1
None	No IPR available	PANTHER	PTHR31692:SF4	EXPANSIN-LIKE A1-RELATED	coord: 53..163 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G012540	Cla015778	Watermelon (97103) v1	lsiwmB106
Lsi11G012540	MELO3C013290	Melon (DHL92) v3.5.1	lsimeB096

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G012540	Bottle gourd (USVL1VR-Ls)	lsilsiB054
Lsi11G012540	Cucumber (Gy14) v1	cgylsiB122
Lsi11G012540	Cucurbita maxima (Rimu)	cmalsiB100
Lsi11G012540	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G012540	Cucurbita maxima (Rimu)	cmalsiB558
Lsi11G012540	Cucurbita moschata (Rifu)	cmolsiB080
Lsi11G012540	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G012540	Cucurbita moschata (Rifu)	cmolsiB542
Lsi11G012540	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G012540	Cucurbita pepo (Zucchini)	cpelsiB232
Lsi11G012540	Cucurbita pepo (Zucchini)	cpelsiB526
Lsi11G012540	Cucurbita pepo (Zucchini)	cpelsiB607
Lsi11G012540	Wild cucumber (PI 183967)	cpilsiB506
Lsi11G012540	Cucumber (Chinese Long) v2	culsiB494
Lsi11G012540	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G012540	Watermelon (Charleston Gray)	lsiwcgB102
Lsi11G012540	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G012540	Melon (DHL92) v3.6.1	lsimedB102
Lsi11G012540	Silver-seed gourd	carlsiB174
Lsi11G012540	Silver-seed gourd	carlsiB316
Lsi11G012540	Silver-seed gourd	carlsiB956
Lsi11G012540	Cucumber (Chinese Long) v3	cuclsiB529
Lsi11G012540	Watermelon (97103) v2	lsiwmbB086
Lsi11G012540	Wax gourd	lsiwgoB118