Lsi11G011680 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGTCACTAATGAGGAAGTATGCACATGTTGAGAGAAACTTGAAAGACTTAGAGGACCTTGGTTGTACTGTTTTGTATGGAGTGGATGCAAGAACAATGAGCCACCATCCACTTCTTTGCCTCAAGTTATTTGATCGGATCGTCTTCAACTTTTCACATGCGGGTTTTTACTTTGGAGGAGAGAAAAATGTGATTTAAATCATGTGAGTTTTGTTTGATAACGATTTCGTTTTTAGTTTTCATTTTTTTTATATGCTTGGAGGGGGGGGGGAGGTGTTAGTTTTTAATATTGATGATAGTTTAACTTCAATGGCTTTGTATTTGATAGGCTTCACAGGGATGTGGTGAGAGGATTTTTGAGTAATGCAAAGGAAATGGTGGCTGAAAATGGTGAAATTCACATTACCCACAAGACCTCATATCCTTACAATGAATGGAAGATTGAGAAACTAGCAGCAGAGGTAGGTCTCGTTCGGATCGGGTGGGCGTATTTTTGTAAAGAGGACTATTCAGGTTATGAAAATAAGAGAGGTGCCGGGACAGATAGCGATGCAGCATTCCTCATTGGATCATGCAGCACGTTC AGTCACTAATGAGGAAGTATGCACATGTTGAGAGAAACTTGAAAGACTTAGAGGACCTTGGTTGTACTGTTTTGTATGGAGTGGATGCAAGAACAATGAGCCACCATCCACTTCTTTGCCTCAAGTTATTTGATCGGATCGTCTTCAACTTTTCACATGCGGGTTTTTACTTTGGAGGAGAGAAAAATTTTAACTTCAATGGCTTTGTATTTGATAGGCTTCACAGGGATGTGGTGAGAGGATTTTTGAGTAATGCAAAGGAAATGGTGGCTGAAAATGGTGAAATTCACATTACCCACAAGACCTCATATCCTTACAATGAATGGAAGATTGAGAAACTAGCAGCAGAGGTAGGTCTCGTTCGGATCGGGTGGGCGTATTTTTGTAAAGAGGACTATTCAGGTTATGAAAATAAGAGAGGTGCCGGGACAGATAGCGATGCAGCATTCCTCATTGGATCATGCAGCACGTTC ATGAGGAAGTATGCACATGTTGAGAGAAACTTGAAAGACTTAGAGGACCTTGGTTGTACTGTTTTGTATGGAGTGGATGCAAGAACAATGAGCCACCATCCACTTCTTTGCCTCAAGTTATTTGATCGGATCGTCTTCAACTTTTCACATGCGGGTTTTTACTTTGGAGGAGAGAAAAATTTTAACTTCAATGGCTTTGTATTTGATAGGCTTCACAGGGATGTGGTGAGAGGATTTTTGAGTAATGCAAAGGAAATGGTGGCTGAAAATGGTGAAATTCACATTACCCACAAGACCTCATATCCTTACAATGAATGGAAGATTGAGAAACTAGCAGCAGAGGTAGGTCTCGTTCGGATCGGGTGGGCGTATTTTTGTAAAGAGGACTATTCAGGTTATGAAAATAAGAGAGGTGCCGGGACAGATAGCGATGCAGCATTCCTCATTGGATCATGCAGCACGTTC MRKYAHVERNLKDLEDLGCTVLYGVDARTMSHHPLLCLKLFDRIVFNFSHAGFYFGGEKNFNFNGFVFDRLHRDVVRGFLSNAKEMVAENGEIHITHKTSYPYNEWKIEKLAAEVGLVRIGWAYFCKEDYSGYENKRGAGTDSDAAFLIGSCSTF
BLAST of Lsi11G011680 vs. Swiss-Prot
Match: Y4648_ARATH (Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.2e-28 Identity = 69/154 (44.81%), Postives = 93/154 (60.39%), Query Frame = 1
BLAST of Lsi11G011680 vs. Swiss-Prot
Match: BMT5_SCHPO (25S rRNA (uridine-N(3))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bmt5 PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07 Identity = 38/139 (27.34%), Postives = 66/139 (47.48%), Query Frame = 1
BLAST of Lsi11G011680 vs. TrEMBL
Match: A0A0D2VFN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G149800 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 2.1e-38 Identity = 84/154 (54.55%), Postives = 102/154 (66.23%), Query Frame = 1
BLAST of Lsi11G011680 vs. TrEMBL
Match: V4UII5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010347mg PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 3.1e-37 Identity = 78/155 (50.32%), Postives = 103/155 (66.45%), Query Frame = 1
BLAST of Lsi11G011680 vs. TrEMBL
Match: A0A0S3T8Z6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G063400 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 2.6e-36 Identity = 83/155 (53.55%), Postives = 103/155 (66.45%), Query Frame = 1
BLAST of Lsi11G011680 vs. TrEMBL
Match: A0A0L9VP26_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g237100 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 2.6e-36 Identity = 83/155 (53.55%), Postives = 103/155 (66.45%), Query Frame = 1
BLAST of Lsi11G011680 vs. TrEMBL
Match: A0A0L9VN55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g236800 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 7.5e-36 Identity = 81/155 (52.26%), Postives = 101/155 (65.16%), Query Frame = 1
BLAST of Lsi11G011680 vs. TAIR10
Match: AT1G55790.1 (AT1G55790.1 Domain of unknown function (DUF2431)) HSP 1 Score: 143.3 bits (360), Expect = 1.3e-34 Identity = 71/155 (45.81%), Postives = 97/155 (62.58%), Query Frame = 1
BLAST of Lsi11G011680 vs. TAIR10
Match: AT4G26485.1 (AT4G26485.1 Domain of unknown function (DUF2431)) HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29 Identity = 69/154 (44.81%), Postives = 93/154 (60.39%), Query Frame = 1
BLAST of Lsi11G011680 vs. TAIR10
Match: AT5G56060.1 (AT5G56060.1 Domain of unknown function (DUF2431)) HSP 1 Score: 125.6 bits (314), Expect = 2.7e-29 Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 1
BLAST of Lsi11G011680 vs. TAIR10
Match: AT5G56075.1 (AT5G56075.1 Domain of unknown function (DUF2431)) HSP 1 Score: 109.4 bits (272), Expect = 2.0e-24 Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 1
BLAST of Lsi11G011680 vs. TAIR10
Match: AT5G25030.1 (AT5G25030.1 Domain of unknown function (DUF2431)) HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18 Identity = 57/155 (36.77%), Postives = 84/155 (54.19%), Query Frame = 1
BLAST of Lsi11G011680 vs. NCBI nr
Match: gi|823257772|ref|XP_012461569.1| (PREDICTED: uncharacterized protein At4g26485-like [Gossypium raimondii]) HSP 1 Score: 166.8 bits (421), Expect = 3.0e-38 Identity = 84/154 (54.55%), Postives = 102/154 (66.23%), Query Frame = 1
BLAST of Lsi11G011680 vs. NCBI nr
Match: gi|763814697|gb|KJB81549.1| (hypothetical protein B456_013G149800 [Gossypium raimondii]) HSP 1 Score: 166.8 bits (421), Expect = 3.0e-38 Identity = 84/154 (54.55%), Postives = 102/154 (66.23%), Query Frame = 1
BLAST of Lsi11G011680 vs. NCBI nr
Match: gi|659094511|ref|XP_008448100.1| (PREDICTED: uncharacterized protein At4g26485-like [Cucumis melo]) HSP 1 Score: 166.0 bits (419), Expect = 5.2e-38 Identity = 85/153 (55.56%), Postives = 103/153 (67.32%), Query Frame = 1
BLAST of Lsi11G011680 vs. NCBI nr
Match: gi|567921392|ref|XP_006452702.1| (hypothetical protein CICLE_v10010347mg [Citrus clementina]) HSP 1 Score: 162.9 bits (411), Expect = 4.4e-37 Identity = 78/155 (50.32%), Postives = 103/155 (66.45%), Query Frame = 1
BLAST of Lsi11G011680 vs. NCBI nr
Match: gi|920716391|gb|KOM56479.1| (hypothetical protein LR48_Vigan10g237100 [Vigna angularis]) HSP 1 Score: 159.8 bits (403), Expect = 3.7e-36 Identity = 83/155 (53.55%), Postives = 103/155 (66.45%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |