Lsi11G011080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G011080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Myb family transcription factor family protein
Location	chr11 : 19289303 .. 19289548 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCAGCTCATGGTTCTGCAGGTCAATGGACTGCAAAGCAAAACAAAGCATTTGAAGAAGCTTTGGCAATGTATGATCAAGACACACCTGATAGATGGTTGAATGTTGCAAAGGCCATTGGTGGAAAAACTGAGGAGGAAGTTAAAAGGCATTACCAAGTTCTTGTGGAAGATGTTAAACATATTGAGTCTGGCAAAGTTCCTTTTCCTTACAGAAGTTCAAGAGCCAATAATTAG

mRNA sequence

ATGGCTTCAATGTCAGCTCATGGTTCTGCAGGTCAATGGACTGCAAAGCAAAACAAAGCATTTGAAGAAGCTTTGGCAATGTATGATCAAGACACACCTGATAGATGGTTGAATGTTGCAAAGGCCATTGGTGGAAAAACTGAGGAGGAAGTTAAAAGGCATTACCAAGTTCTTGTGGAAGATGTTAAACATATTGAGTCTGGCAAAGTTCCTTTTCCTTACAGAAGTTCAAGAGCCAATAATTAG

Coding sequence (CDS)

ATGGCTTCAATGTCAGCTCATGGTTCTGCAGGTCAATGGACTGCAAAGCAAAACAAAGCATTTGAAGAAGCTTTGGCAATGTATGATCAAGACACACCTGATAGATGGTTGAATGTTGCAAAGGCCATTGGTGGAAAAACTGAGGAGGAAGTTAAAAGGCATTACCAAGTTCTTGTGGAAGATGTTAAACATATTGAGTCTGGCAAAGTTCCTTTTCCTTACAGAAGTTCAAGAGCCAATAATTAG

Protein sequence

MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRANN

Homology

[Close]

BLAST of Lsi11G011080 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 5  SAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKH 64
          S  GS   W+AK+NKAFE ALA+YD+DTPDRW NVA+A+ G+T EEVK+HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGKVPFP-YRSSRAN 81
          IESGKVPFP YR++  N
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of Lsi11G011080 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-24
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 2  ASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVED 61
          +SMS+  S+G WTAKQNKAFE+ALA YDQDTP+RW NVAK +GGKT EEVKRHY++LV+D
Sbjct: 4  SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKHIESGKVPFP-YRSS 78
          +  IE+G VPFP YR+S
Sbjct: 64 INSIENGHVPFPNYRTS 79

[Close]

BLAST of Lsi11G011080 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-23
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 3  SMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDV 62
          SMS++GS G WT KQNKAFE ALA+YDQDTPDRW NVA+A+GGKT EE KR Y +LV D+
Sbjct: 5  SMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGKVPFP-YRSSRANN 82
          + IE+G VPFP Y+++  N+
Sbjct: 65 ESIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of Lsi11G011080 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-21
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MAS S   SA  WT K+NK FE ALA YDQDTPDRW NVA+A+GGK+ EEV+RHY++L+ 
Sbjct: 1  MASNSMSSSAS-WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIR 60

Query: 61 DVKHIESGKVPFPYRSSRANN 82
          DV  IESG+ P P   S  NN
Sbjct: 61 DVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Lsi11G011080 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.1e-21
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MAS S   S   WT  QNK FE ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY +LVE
Sbjct: 1  MASNS-RSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKHIESGKVPFP-YRSSRANN 82
          D+ +IE+G+VP P Y++  +N+
Sbjct: 61 DLINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Lsi11G011080 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-33
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MAS+SAHGS G WTAKQNKAFEEALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+E
Sbjct: 1  MASLSAHGS-GVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGKVPFPYRSSRAN 81
          DVKHIESGKVPFPYRSSR+N
Sbjct: 61 DVKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of Lsi11G011080 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.0e-28
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MASMS+HGS G WT  QNKAFE+ALA+YDQDTPDRWLNVAKA+GGKT EEVKRHY +LVE
Sbjct: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKHIESGKVPFPYRSSRANN 82
          DVK IESG+VPFPYR+S   N
Sbjct: 61 DVKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of Lsi11G011080 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.7e-28
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MASMSAHGS+  WTA +NKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQ+L+E
Sbjct: 1  MASMSAHGSSA-WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGKVPFPYRSS 78
          DV HIESG++PFPYR S
Sbjct: 61 DVNHIESGQIPFPYRKS 76

[Close]

BLAST of Lsi11G011080 vs. TrEMBL
Match: A0A059AND9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01273 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-25
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MAS S    +  WTAKQNKAFEEALA+YD+DTPDRW NVAKA+GGKT EEVKRHY++LVE
Sbjct: 1  MASSSMSRGSSSWTAKQNKAFEEALAVYDKDTPDRWHNVAKAVGGKTAEEVKRHYELLVE 60

Query: 61 DVKHIESGKVPFP-YRSSRANN 82
          DVKHIESG+VPFP YR++   N
Sbjct: 61 DVKHIESGRVPFPNYRTTGRGN 82

[Close]

BLAST of Lsi11G011080 vs. TrEMBL
Match: A0A067EDU4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034615mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-25
Identity = 56/80 (70.00%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 2  ASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVED 61
          +SMS+ GS+G WTA+QNKAFE ALA+YD+DTPDRW NVA+A+GGKT +EVK+HY++LVED
Sbjct: 4  SSMSSRGSSGSWTAEQNKAFERALAVYDKDTPDRWYNVARAVGGKTADEVKKHYELLVED 63

Query: 62 VKHIESGKVPFP-YRSSRAN 81
          +KHIESG VPFP YR+   N
Sbjct: 64 IKHIESGHVPFPKYRTPSGN 83

[Close]

BLAST of Lsi11G011080 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-25
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 2  ASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVED 61
          +SMS+  S+G WTAKQNKAFE+ALA YDQDTP+RW NVAK +GGKT EEVKRHY++LV+D
Sbjct: 4  SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKHIESGKVPFP-YRSS 78
          +  IE+G VPFP YR+S
Sbjct: 64 INSIENGHVPFPNYRTS 79

[Close]

BLAST of Lsi11G011080 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-24
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 3  SMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDV 62
          SMS++GS G WT KQNKAFE ALA+YDQDTPDRW NVA+A+GGKT EE KR Y +LV D+
Sbjct: 5  SMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGKVPFP-YRSSRANN 82
          + IE+G VPFP Y+++  N+
Sbjct: 65 ESIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of Lsi11G011080 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-22
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MAS S   S   WT  QNK FE ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY +LVE
Sbjct: 1  MASNS-RSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKHIESGKVPFP-YRSSRANN 82
          D+ +IE+G+VP P Y++  +N+
Sbjct: 61 DLINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Lsi11G011080 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 97.4 bits (241), Expect = 4.2e-21
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MAS S+  S+  WT+KQNK FE ALA+YD+DTPDRW NVAKA+G K+ EEVKRHY +LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKHIESGKVPFP 74
          D+ +IE   VP P
Sbjct: 61 DLMNIEQDLVPLP 72

[Close]

BLAST of Lsi11G011080 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 89.7 bits (221), Expect = 8.7e-19
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MAS S   S   WTA+++K FE ALA +D+DTPDRW  +A+A+GGK+ EEVKRHY++L+ 
Sbjct: 1  MASSSM--STSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLR 60

Query: 61 DVKHIESGKVPFP-YRSS 78
          DV  IESG+ P P YR++
Sbjct: 61 DVNDIESGRYPQPRYRNT 76

[Close]

BLAST of Lsi11G011080 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-33
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MAS+SAHGS G WTAKQNKAFEEALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+E
Sbjct: 1  MASLSAHGS-GVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGKVPFPYRSSRAN 81
          DVKHIESGKVPFPYRSSR+N
Sbjct: 61 DVKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of Lsi11G011080 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 5.9e-33
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MASMSAHGS G WTAKQNKAFE+ALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+E
Sbjct: 1  MASMSAHGS-GVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGKVPFPYRSSRAN 81
          DVKHIESGKVPFPYR+SR N
Sbjct: 61 DVKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of Lsi11G011080 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MASMS+HGS G WT KQNKAFE+ALA+YDQDTPDRWLNVAKA+GGKT EEVKRHY +LVE
Sbjct: 1  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKHIESGKVPFPYRSSRANN 82
          DVK IESG+VPFPYR+S   N
Sbjct: 61 DVKFIESGQVPFPYRTSGDGN 80

[Close]

BLAST of Lsi11G011080 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 5.7e-28
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MASMS+HGS G WT  QNKAFE+ALA+YDQDTPDRWLNVAKA+GGKT EEVKRHY +LVE
Sbjct: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKHIESGKVPFPYRSSRANN 82
          DVK IESG+VPFPYR+S   N
Sbjct: 61 DVKFIESGQVPFPYRTSGGGN 80

[Close]

BLAST of Lsi11G011080 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 9.7e-28
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVE 60
          MASMSAHGS+  WTA +NKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQ+L+E
Sbjct: 1  MASMSAHGSSA-WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGKVPFPYRSS 78
          DV HIESG++PFPYR S
Sbjct: 61 DVNHIESGQIPFPYRKS 76

The following BLAST results are available for this feature:

BLAST of Lsi11G011080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAD_ANTMA	2.2e-24	66.23	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL1_ARATH	5.0e-24	70.13	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL2_ARATH	3.2e-23	65.00	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RADL3_ARATH	3.0e-21	61.73	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL6_ARATH	5.1e-21	62.20	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]

BLAST of Lsi11G011080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K344_CUCSA	1.1e-33	91.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1	[more]
A0A0A0K348_CUCSA	4.0e-28	79.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1	[more]
A0A0A0K3K0_CUCSA	6.7e-28	80.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1	[more]
A0A059AND9_EUCGR	1.1e-25	73.17	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01273 PE=4 SV=1	[more]
A0A067EDU4_CITSI	1.4e-25	70.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034615mg PE=4 SV=1	[more]

BLAST of Lsi11G011080 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	2.8e-25	70.13	RAD-like 1	[more]
AT2G21650.1	1.8e-24	65.00	Homeodomain-like superfamily protein	[more]
AT1G75250.1	2.9e-22	62.20	RAD-like 6	[more]
AT1G19510.1	4.2e-21	64.38	RAD-like 5	[more]
AT2G18328.1	8.7e-19	56.41	RAD-like 4	[more]

BLAST of Lsi11G011080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466805\|ref\|XP_004151116.1\|	1.5e-33	91.25	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|659092351\|ref\|XP_008447025.1\|	5.9e-33	90.00	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|659092346\|ref\|XP_008447024.1\|	1.9e-28	80.25	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|778725458\|ref\|XP_004151125.2\|	5.7e-28	79.01	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|778725452\|ref\|XP_011658943.1\|	9.7e-28	80.52	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017877	Myb-like_dom
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G011080.1	Lsi11G011080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 11..58 score: 1.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 score: 2.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 12..65 score: 1.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 11..67 score: 6.95
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 5..59 score: 6
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 13..72 score: 1.1
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 13..72 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G011080	Wax gourd	lsiwgoB115
Lsi11G011080	Wax gourd	lsiwgoB128
Lsi11G011080	Bottle gourd (USVL1VR-Ls)	lsilsiB021
Lsi11G011080	Cucumber (Gy14) v1	cgylsiB146
Lsi11G011080	Cucumber (Gy14) v1	cgylsiB610
Lsi11G011080	Cucurbita maxima (Rimu)	cmalsiB103
Lsi11G011080	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G011080	Cucurbita maxima (Rimu)	cmalsiB514
Lsi11G011080	Cucurbita maxima (Rimu)	cmalsiB562
Lsi11G011080	Cucurbita moschata (Rifu)	cmolsiB090
Lsi11G011080	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G011080	Cucurbita moschata (Rifu)	cmolsiB500
Lsi11G011080	Cucurbita moschata (Rifu)	cmolsiB545
Lsi11G011080	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G011080	Cucurbita pepo (Zucchini)	cpelsiB231
Lsi11G011080	Cucurbita pepo (Zucchini)	cpelsiB532
Lsi11G011080	Cucurbita pepo (Zucchini)	cpelsiB605
Lsi11G011080	Melon (DHL92) v3.5.1	lsimeB086
Lsi11G011080	Wild cucumber (PI 183967)	cpilsiB097
Lsi11G011080	Wild cucumber (PI 183967)	cpilsiB506
Lsi11G011080	Cucumber (Chinese Long) v2	culsiB494
Lsi11G011080	Melon (DHL92) v3.5.1	lsimeB096
Lsi11G011080	Watermelon (Charleston Gray)	lsiwcgB085
Lsi11G011080	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G011080	Watermelon (97103) v1	lsiwmB106
Lsi11G011080	Watermelon (97103) v1	lsiwmB111
Lsi11G011080	Cucumber (Gy14) v2	cgyblsiB090
Lsi11G011080	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G011080	Melon (DHL92) v3.6.1	lsimedB090
Lsi11G011080	Melon (DHL92) v3.6.1	lsimedB102
Lsi11G011080	Silver-seed gourd	carlsiB157
Lsi11G011080	Silver-seed gourd	carlsiB290
Lsi11G011080	Silver-seed gourd	carlsiB809
Lsi11G011080	Cucumber (Chinese Long) v3	cuclsiB109
Lsi11G011080	Cucumber (Chinese Long) v3	cuclsiB529
Lsi11G011080	Watermelon (97103) v2	lsiwmbB080
Lsi11G011080	Watermelon (97103) v2	lsiwmbB086