Lsi11G010620 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G010620
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDNA-directed RNA polymerase subunit alpha
Locationchr11 : 18452240 .. 18462615 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGGCATATGGTTGAACAAAAAGAGGTGAAATTTTGCATTTTTTTAATACCAAATCCCCCTTGAGCTTCTACCTTCCTTCTCACCAATTACGCTTAGAGTTTTTCTTGCTTCATTTTTCACTTCCGAGGTACCTCTTATTATGAGTTTGTTTCATCATTCTATGTTATTTCATTATGCTTGAATGATGGGTAAAAAGGATATGTGTGACTTTTCCCTTCCCTTCTTATTTTGTCATTTTCTGTTTTTTTTTTAAGGGCAGGGTGTACGAGGCAATAGAAAACCCTTGATGTAGGCATTTATTGGGAGCTTTGTTTTTTCCATTTAAGTTTAGTTTTTCGTATGTTTTGTTTGGCATGTAGGGGAGGTTGTGAGTTTTGTGACCTTTCAAATTTATCTTTTTTTTGAATTATTTCATTACTTTTTGGTGTAATTTCCCTGAACTAGTTTTTGAGCATTCTCTTATGGGTGATTGATTTGCAGCTTTGGCATGCATTCTAGCAGGAACAATAAACTCCAAAATGGGATAAAGAACATGGTAAGTAATTTGTTTCCACTTCTTGCTTGGTCTGTGATGCTTAGTACATGTAGATGTAGGAAACTTATGGGTCATTTGAGCTAGCATGATAATAGTTTTCTCCTTATATGCTCGCATCTATTGGATTGAGTACCTAATAGGACATGTTTATATTGTTTGTTTAAAACATTGGCTTCATGGTTCATCTTAAATATCCTTATGCGTCACTTGTTGGATTCCTACCTCCTATTTTATCCATTCATTTAATTATTTTCTTGGTTTTATGTTTTGAAACAAAATTACGTTTGAATTGTGTTTGCAGATGTCAATAAAACCTTATTTGAAACCATTGAAATTCTGCCTTGTTGGTAAAAAGTGGATTAGAATGGACTTTAGGGTAGCTTGATTTCATATTGGTGCAATTGTAGTTTCCCATTGTGCTTTTCAAATTCCCTTTGAAAACTAAGGTCTATTACAGTATGACCTTCTAGTTCTTGTTTTGAGTTAGTCTCTTTCTTTATTGGTAAGGAGTTTGGTATTGCAAACCATAAAAAAATTTCATATGTTTGAGAAATGCTCTATGATATTTGTCTTTGTTTTTATTACATTAGTGCATTTTTTCTTATGTGTTATTGTTGGCTCTTTAATTTTCCCTGTTGGTATCCACATTAATGATTGGATGAAAACTAGAGATAAGGTTTAAGTATGTGTGAGTTTTGATATTGGTGTTTCAACTTTTATAATCAGTATAATTGTGAGTTTCCTTGTACCTCTTGATTGCAATTTTGTGATGTTTCTTTGTTTCTTCTTGAGATTTGGTTATAATGGCATTTCTTCTAGTGCATCTTTCTTTTTTAGTTAACAAATATAGCTTCCATTAAACAGACATGAAAATCTATTTATTTTCATCTCTACTGTAGTTAATTTGTTGGGAAAAAGTTGTCGCATCTCCTCAATTCAACAATCTTGTTGCCTTTTTTTATTCTTCTTTTTCTATAGAATAAAACCTCTAAAACAGAATTCTTTCTCATTTATTTGGTTTTAAGAACACACACCTTTATTTGGTTTCAAGAACATGCACACTGATTTCAGCACATGAACTTAGGTTTGTCTTGATGAAAAGCCAAGGCTGGAATGGACTCCCTTAAGCTTCATCAAAGATTTGTTGAAGCTGTCGACCTTGGTGGAGCAGATAGTTCATTTTTTTTCTATTTAATTAAACCATTTCATTTTTCTTTCAGTTTCACTAATTTAATTTTAGTTTTTTAAATTTTTGCAGAGGCCACACCTAAGAGCTTGATGATAGTGATGGGAATCAATGGCCTTAGTCTTTACCATCTCAAGAGCCATTTAGAGGTTTTTTGTTTCAATCAATTTCTATTCTATATCTTATCATATGAAATCCTCATTTCTTATTTTGTATTAGAAATACAGGTTGGGAAAAAACCAACAGTCTGAAACCAATGCTCAAATCATAACAACTCATTGGGTTGTTCTTTTTTGGTTTCTTCTATTTGTTTGTGCATCTATTTTATGAAAGTAATGTGGAATTGACTCATATTTTCTTGTTTTAAGCTTCCTACATTTTTTTTTATTGAATAGAATAATAATGTTTAAATAAGATTACTGGTCGGCTTTTGCTCTTGTAAGATATTAGGTTTGAAGTGATGCTTAGGCATCTTTTGGAACTTTTTAGGCACTTCTAGGATGGTTTTGAAACTCAAAGAAACACTGGATACTTTTTAGATTGTTTTAAGAGTCAAAATATCACTTACATATGTTTTAGGAACTTTTAATATCCTCTGATGGGTAGGTTGTGGTTTTGAGAGTGAAAGTTTTATGTTGGTCTAATCCTTCTCTTTTTAGCTATACACATTAATTGTCCATATAATATGATGTTTTATTCTGATGAGATTTGATAATCACATATGAGTGAGTTTTTCCATGAACAATAACTTTCCTTTATACTTATGTGTAACTTGTTGATAGAAATACTAAATAATGAAATGCAATATGATATTTTTAAGATCGAGAACTTACACAAGAAGGTAAGTGTCATTTACGACATATTTTATTACAAATTGATTTCGTGTATGCATATCTTTTTAGAGGTTTGGCAATTGCACTAGCCACATGTTACAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAAAAAAAAAAAAAAAAAAATATAAGACTATCACATTTAATTTGATGACATTTATCTTCATGAGTGGTGAATGACTTTGCATATATATAGTGCCAAAGTATAGAATCTTATGTCAAATATCAATACACAGCTTGCACTGAGGTTCACTCTCTTTTCCATTTTGTTTTCCTCTGTCGACTTTTGGAATCTGGTACAATTTTTTAAGTTAGTTGTCATAGCACATTCATGTATGCATAACTTGATGTAGCAAATGAATTAGGCTTCCAAAAGAAGATTAGTTTTGACTAACTGTTGGCTCTAGCTCTTTCCATCTCTAGTTTGGATTGGTATGCTATGTTTTTGTGCTTTATAATGCTTCTTATTCTTGGTGGGACTTCATTAGGATTGTTGTGATTTTCTTGATTTCCTTTGTACTGGTGGCTTTTAATGCATAAATCAAGTTCACTTGCATGACGTGGGTGATTTTTGTTGGCTATTGTAAGCAATTTGGCATGGATATTTCACTATATTTACTATACATGGTGCCATTATTGAACTTTTCATAAGAGAATGTTCCAAGATTTTTCGTGGGCACTGTTGGATATTGCTGTTGAATTGAAATATATATGTGTTGAAGTATTGTTAAATATTGATGTTGATCATTAAAACACGGATAGTAGCCTTTTCATATGATAGTCACAGATGTTTAATAAGGAAATAAACAACAATTTTTAGAAATGATTTTGTTGGCAAAATTTGGTAGAAAATTGAGAAGAATGAATCTTTGTTTTTAACAAATATGGATTGATACAACTTTAAGTTTGTTTGATGCTTGAACGGGGGAAAATGTGTTTATGAGCTGGGAAAGTGAAACAAAAATCGTGGTTTTCATATACTTTTTCAACGGCTACGCTATGATAAATTTTTATTTATCCTAAAGGCTTAAAATCTATTGTTATAGTAAATTTAACCATTTAATTCATCTTAAATGCATTTTGATTTTACCTTCTTGCTACAAGAAAAATGTGTTGTCTGATTTTCTTTTATAATGTTATTGTAAAAATTAATATATACTCATCATTTGATTGTCTACCATTCTTTTATTTCAGAAGGTCAATTCCGAGAGCATATTTTATGAATTGGATGAAATAGATGGCACAAGTGATACCATCATAGTATGAGTTATATTTAACATCAGAAAATCACTCCATTTAGATCTTTTACTCATATTTTTCCTTTTTAATTTAATTTCTCTTGAGATTCTTGATTTTTTTATTTTTTATTTATTTATTTTTTTTTTTGGTGGGGGGTTAATTTCATTATCTCTTGATTCTCTTCATTGCCATTGATAGTTAATTATTTGTTTTAACTTTTGGATAGGAAATAACTTAAGAAGTTGTTCTACCGAGATCAAGACCTCAAGACCCTTCTTCACATTGACTCCATCAAAACATTGTAAGCTACATTTGCCTTATAAATTTGTTGCCGTTGATATATAGTTGTGACTGATGATGTCCTTGTTATTTTCTTCATTTGATACATAATCACATCTTCATTGTATGTACTAATGTTGGTATATCCTTGAAGGAGGGGGAGCTTGTCCTAAAAATTTTTTGGCTTCATTTGGATGTAATCCATTGAAAGTGTCATTGTTCATAGATATCTTGTTTTCTGCATTGATTGAAGACTAGTTATTTTCTTATAATTTATTTTGTCTTTGCTGCAGTTTCTTGTGCTACACAGGTTTGAAGCTCTTAAACCCTTGTTGTTCTCAACATCTCTTTTTGTTGCTTGTTCTCTTTCAGGTAATTTTCTCTTTCTAATCTTCAACCCTCTATACTAATTCCCCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCTGGTTTTTTTGTCCTTTGCTTTTTGTTAGAGAATAATACCCAAATGATGTTTCGTCGTTCAAATTGAAGAATGAACATTCTTAATTGTATTACATGCATGACTGTTCCGATTTTTCTGTTATTTTTCACAGATTTTTCCTAGCTTCATTGTTGAGAGAAGGCTATCGGTTATTGCTGTTGAAACTGATGTGAATGAAAGTCTTTAGTGTGGTTTTCTTTTTAATGTTGACCAGTTGAATACTCTGAGTCTTGTGAGATAAATTCATGGAAACTTGAAAACTAGAATTTGAGTTGTTTAATTTTTATTTGTTTGTTTGTTTTTTTCTTTTTATTGTTGTCAAGTTGTTCTGCTTATTTACAGTTTCTGCTTATTTTTTATTAGTTAAATCTCATGCACAAGGTAAAGCGTCAGCATGTTGATATCCTTATTACATGTAGTTAACTATGAAATGCACCTTCTTTTTCATATTTCATAATCAAAATCAAGAAAAGGTCATCTTTACTAATTGTCATGAAGAAGCAATGCTTTAGAGATGCTAAATTTGGGTGACCAATCAAATGCTTAAGCACCTTTAAGATGCATATATAGTTTCAAGTTATTGTAAGCTTATGTTTAACCAAGTAATACCCTTGACTTTACTCTTCTTTTTTTTTTGTTGATTAATCAATCACTCATTGTAGTTTTTGAGCTAGTGAAGCAAGTTGTGTGCATATGAACTTTAAAGTTTAATCTGAATCTTGTAGGTTGCTGTTTTTGAAGAAATTATAAAGGGAAGGTGAGGGGTCGATCTCTTTTACCCCTTCGATCTCTTTTCCCCCTTTGGTGAGTTGTTGCTTCTATCTTCTATGTTTTTAATTTTATACCAGTCATGATTCTAACCAAATTAATTCGATCAACTAAAACGCATTTGATGAAAGAATTTGAGGTGAATTAGATGGTAAATATATGTTTTTTTTTCAGGACTCAAGGATAAGAGATTGGTCAAATAGTTAGGATGTGAAGATTAAATGTTGCACCACATTAAAAAAATGAACACTAAGTGATACATATGTATCTTAGAAATTAAAGAAAACCAAGGCTATTTTTATTTTATTTACTATAACGTAATTTGAAGAACATTGCAACCTGTAAAAAAAAAGGTTGTATATGTATGTGGAGTGTTCTAGTGATTGAAGTAGGACATTATGAGTGATATATAAATTTAGGCCCTTGAAAATTATTTTGTTGTAATATTGCATTTGATTACATTAAATATGTATATAATTGAAGTTGATGTTTACTTATATAAAATGCTATATAAAAATATATGACTTGATTAAAATTGGCTATCACGGTGAAATTAAAAGTGTTATATGTTATTATAGCATTTTTAGTAAAAAATGCTATTAAAAATCGATCATGAAATTTTTTACTACTATAAAAAAGGCTATTAAAAGTTAACAATAGCATTAATATTAAGCAATTGAAAATGAACTTATATAGCATTGAAAAAAAATGCTATGGAAAGTTAGGACATTCAATAACATTGGCTACGACAGCATGTCTAAAAATGCTATAGAAAGTCTTTTATAGTATTTTTCTACTGCTATAAAACACGCTTTAAAAGAACTTGTATAACGTTTTTTACTGTTATAAAAGACTTTCTATAGCATTTTTTGTGAACGCTATGAAAAGTTTCCATAACATCAAATATATGCTATTGAAAGTTAATTCTTTATGGGCTACGACTGCATTTCAAAAACGCTATGAAAAGTCTATGATAACACTTTTTTAATGTTATTGTATGTGATATTTGTTGTAGTGTACTTTCGTGATGTCACAAAGTCAGACTATGTTTTATATTCTTTTTTCGATTTCTTTATACATTTTTAATTCAACTTTTTGTAACCTCTTTTTCAAATTGATTAAGTTTTATCTAATTCTTTTTCAAATTTTTAATACATTTAGAGATTTGTATTCCTATCGCGATTTATCTATTTTTTGTTCATGCATTTTTTGTTTATATTATTACTATTTATATAATTTCTATTTTTAAAATGTAATATAATAATAATAATATATCATTGGTATATAAACTGTAAAATTTCGAGATTTTGTGAATTTAAATTAATTATCTCAAATTATTGGATTTTGTTTCCTTTCAATTTTTTTTTTTGTTTTATAATCAAATTTTAATATAATTCAAATCTATAAAAAGTAAAACTAAATAAATAAGGAAATAAAATGAAAAAATGAAAAAAGAAAAAAATGTAAGCAACAATTCTTTCTCTGTTCTTCTATCATTGTTGCAGCAGAATACCATACTACCAACAGGTTAAGGTGTTTTTTTTTTCTTCATTTTTGCAGCAATATATTAATGACCTGGAAAATACAGTTGATTTAGCTATTTTTAGATTTATTTTAGGCGGATGGGGGGAATTCACGAAAGAAAAGTGGCCCATTTCAGTTTAGGGTTTAGAAAATGGCCTCGCCGATTTTGAAAAGCTTGTGTTTTTCGGCTTCTGGAGCTGAAAAGTCATAAATCCAAATGTAGAAACTCTTTTTCTATCTCGGTATAATGAATTTCAAGCATCAGTGGGCCATTTTCTTCTCTTTGAACACTTTTCGTCAACAGAATCAACCCCAAGTTAGTGTTGTTGGTTGGATTTTAGGATAGTCTCAAGGGTTTCATTGTGTTTCAGAATGTGAGGGTGATTTCTATGGTATTTTGTTGGATTAAATGTAATGTATGCTGAGGTGATCTCGGTATATCTTCTCACTTTTAGGGTAAAAAAGAAAAAAAAAATTGATTTTTGGTTGATTCTTAAGAAAATTGTTTTTATTAATTCAAAAGCTATTTTGAAGAGATAGTTGAAAAGAGTATATATAAAATGAAATATTAAATCAATTTTAAATAATGATTTAATCATTATTATCAAATTTTCTAACCATTTATATATGTATGCTTATTCACTAAAGTAAAAATTTTATCTTCTTGAGCAAAGGATTTTGGGCATGTTTTAGCAGGCAAACCGAAAATTAATAGATAATAATTAAATATGGAAAGCTAAGCAATTGGCGTCATTTAGAACCAAATTTCATTATAATTAAGCATCTCCACCAATCGGGCTGTTTGGGTGGAATCATTTTTACAACGGAGAAAGGGTTCCTTCCCAAGTTCGGCTTTAAGTACGGCTTGCACCGTTTTCTTCAGTTTGAGGCTATCGTCAGGGACAATCCCACCCTTTTCAAGGGCACTAACTAAGTCAACATTTTTCTTCATATTCAAAGCCAACTGGAAGTACATGGCTTGGCTGAATTGAGTTTGTGAGCAAGTGCCGTGCTTGTTCCACTCGTATGTCCAGAACCATTCAAACCCATGTCTATCTAATAAGTTTGGCCATTCTACACTCAATTGAGCTGTAAGATGTGAAATCTGAGAAAAAAAAAAAAATTAGAATCACAATTAATTTGAGATTTAGAGAGTGTTTAGATTTACCTTATCAGCTTCGAAATTAGAATCACAATCAATCAGGTAGGATTGACCATTTTGAGGCCAGAGGCCATGAATAGTGAATTTCGTTGGTACATTATCGACATCGCATGGTTGTATTTTACAAAGGGCCTCCGGCCATTGTTGAACAAAAAAGAAGTGGGTAAAAACCTGGCCTTGAACTCGAATAAGAATGAGAAGAAGGATGGTGAAGAGAAGAGTTTTTTTCTTCATCATATTTTGAAAACAAACCTATTGCAACCAAGGAAAAACATGAGAATGGAAGTAAGGCATAGCAAAACGTGTTTATATAGAAGAGGGTAAAAGAATAGGAATATATATAATAATATAATATTATTATTATTAATTCTTATTATTCTTATTATTCTTATTATTCTACCAAAACAACTAAACCCTAAACCCTTATTTGGTAAGACCCACAAATAGAGAAAAATTGTGTCCCTTGATTAATCAATTATTTTTTGCAATGTTTTCAACTAACTACTTTCATAAAGAGAGTTCCAAAATTGAGTTCAAACTAAAAATTAACCTGAGATAATCTTACCAGATTTAAAAATCCTTTATCACCATGCAAATAAAAACAAGTAACAATGTTAAATAAAAATCAAATCTAAATAAAAATATAAATGATATGATATATTCCATTTGATGTGATAAATAAAAATTAAATCAATTAATGATTTAAATAATATTTTAACATGAAAATTAGGTTAATCAAAGATAGTTACACATTGTTTAATCTCTATAATTTAAATTTACTTGTATGTCTATATAAGATATACCATCAAATAGAAGGAACCATTCAAAAGTTTCTCCCCTTTTAGATATTTATTAGTATCTTGTAATTTTAATTAATTTTTGTTAAAATAAAATATTTTTAATGTGTAATAATAATATTCTTTTGGAAGTTATTTTTTCACAAATACAAATTAACTTGATGCATTTTATAGAAGCATATTCGTTTACCCACCTCCTTGAGGAATATTTTTGATAGTGATGTTTACCCATCTCACATGGTTTTGTCTCCCTCCAACTCTTTTGATTAAAAATAAAAATTATTACTCCTAAAATTTGGTAATAGCTACAATTATACCTTAAACTTTTAATTTTAAAAATTGAATCCTTAAACTTAAATGAGTGTTAAAATTAGGTCAAATTGGACATTCAAACTTATATATTTGTATAAATTGTAACATTTGTATCAATTTGAGAATTCAATTTTTATCATTTGTGGGTCTAATTTTTACTATTATTATACGCTTTAGGATTTAACTTTAATGCTTGTATGAGTTTAGGAACCCAATTTTTACCGTTGAAAGTTTAAGAATTTAATTGCAACTACTATCCTATTTTGGAAGTGATTTTTGTAATTTACCTAAATTATTATACAACCATTAATGGAATATAGGCTTGGGAGCTTTTTCCTCAATTTTGTATATTCTTTTTAAAAGTTAAATTCAATTTAATATTTTGTCATTTTCAAAAAAGTATATAACCTAAAGTGATTTTTGTGGCACCTACAATCAAATTTCAAAATGAAAGAAATTGTATTGAGAAGTAATTTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTAGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGATAATACACAGCATATAGCTAACCTGACGGAGCCAATTAATTTGTGTATTGAATTAAAAATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCA

mRNA sequence

TGAGGCATATGGTTGAACAAAAAGAGGTGAAATTTTGCATTTTTTTAATACCAAATCCCCCTTGAGCTTCTACCTTCCTTCTCACCAATTACGCTTAGAGTTTTTCTTGCTTCATTTTTCACTTCCGAGCTTTGGCATGCATTCTAGCAGGAACAATAAACTCCAAAATGGGATAAAGAACATGGTTTGTCTTGATGAAAAGCCAAGGCTGGAATGGACTCCCTTAAGCTTCATCAAAGATTTGTTGAAGCTGTCGACCTTGAGGCCACACCTAAGAGCTTGATGATAGTGATGGGAATCAATGGCCTTAGTCTTTACCATCTCAAGAGCCATTTAGAGAAGGTCAATTCCGAGAGCATATTTTATGAATTGGATGAAATAGATGGCACAAGTGATACCATCATAAAGTTGTTCTACCGAGATCAAGACCTCAAGACCCTTCTTCACATTGACTCCATCAAAACATTTTTCTTGTGCTACACAGGTTTGAAGCTCTTAAACCCTTGTTGTTCTCAACATCTCTTTTTGTTGCTTGTTCTCTTTCAGATTTTTCCTAGCTTCATTGTTGAGAGAAGGCTATCGGTTATTGCTGTTGAAACTGATTTAAATCTCATGCACAAGGTAAAGCGTCAGCATGATAGTCTCAAGGGTTTCATTGTGTTTCAGAATGTGAGGGTGATTTCTATGATTTACCTTATCAGCTTCGAAATTAGAATCACAATCAATCAGGTAGGATTGACCATTTTGAGGCCAGAGGCCATGAATAGTGAATTTCGTTGGTACATTATCGACATCGCATGGTTGTATTTTACAAAGGGCCTCCGGCCATTGTTGAACAAAAAAGAAGTGGGTAAAAACCTGGCCTTGAACTCGAATAAGAATGAGAAGAAGGATGGTGAAGAGAAGAAAATTGTATTGAGAAGTAATTTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTAGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGATAATACACAGCATATAGCTAACCTGACGGAGCCAATTAATTTGTGTATTGAATTAAAAATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCA

Coding sequence (CDS)

ATGGACTCCCTTAAGCTTCATCAAAGATTTGTTGAAGCTGTCGACCTTGAGGCCACACCTAAGAGCTTGATGATAGTGATGGGAATCAATGGCCTTAGTCTTTACCATCTCAAGAGCCATTTAGAGAAGGTCAATTCCGAGAGCATATTTTATGAATTGGATGAAATAGATGGCACAAGTGATACCATCATAAAGTTGTTCTACCGAGATCAAGACCTCAAGACCCTTCTTCACATTGACTCCATCAAAACATTTTTCTTGTGCTACACAGGTTTGAAGCTCTTAAACCCTTGTTGTTCTCAACATCTCTTTTTGTTGCTTGTTCTCTTTCAGATTTTTCCTAGCTTCATTGTTGAGAGAAGGCTATCGGTTATTGCTGTTGAAACTGATTTAAATCTCATGCACAAGGTAAAGCGTCAGCATGATAGTCTCAAGGGTTTCATTGTGTTTCAGAATGTGAGGGTGATTTCTATGATTTACCTTATCAGCTTCGAAATTAGAATCACAATCAATCAGGTAGGATTGACCATTTTGAGGCCAGAGGCCATGAATAGTGAATTTCGTTGGTACATTATCGACATCGCATGGTTGTATTTTACAAAGGGCCTCCGGCCATTGTTGAACAAAAAAGAAGTGGGTAAAAACCTGGCCTTGAACTCGAATAAGAATGAGAAGAAGGATGGTGAAGAGAAGAAAATTGTATTGAGAAGTAATTTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTAGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGATAATACACAGCATATAGCTAACCTGACGGAGCCAATTAATTTGTGTATTGAATTAAAAATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCA

Protein sequence

MDSLKLHQRFVEAVDLEATPKSLMIVMGINGLSLYHLKSHLEKVNSESIFYELDEIDGTSDTIIKLFYRDQDLKTLLHIDSIKTFFLCYTGLKLLNPCCSQHLFLLLVLFQIFPSFIVERRLSVIAVETDLNLMHKVKRQHDSLKGFIVFQNVRVISMIYLISFEIRITINQVGLTILRPEAMNSEFRWYIIDIAWLYFTKGLRPLLNKKEVGKNLALNSNKNEKKDGEEKKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Homology
[Close]
BLAST of Lsi11G010620 vs. Swiss-Prot
Match: RPOA_CUCSA (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-35
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGY IQTPNNFQDA
Sbjct: 152 ERNRGYHIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. Swiss-Prot
Match: RPOA_MORIN (DNA-directed RNA polymerase subunit alpha OS=Morus indica GN=rpoA PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.6e-33
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP  VTAQDIILPPSVEIVDNTQHIANLTEPI LCIEL+I
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPITLCIELQI 151

Query: 291 ERNRGYRIQTPNNFQD 307
           ERNRGYRI+TPNNFQ+
Sbjct: 152 ERNRGYRIKTPNNFQN 167

[Close]
BLAST of Lsi11G010620 vs. Swiss-Prot
Match: RPOA_SOYBN (DNA-directed RNA polymerase subunit alpha OS=Glycine max GN=rpoA PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASIC KGP  VTAQDIILPPSVEIVDNTQHIAN+TEP+NLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQD 307
           ERNRGYRI+T  NFQD
Sbjct: 152 ERNRGYRIKTLKNFQD 167

[Close]
BLAST of Lsi11G010620 vs. Swiss-Prot
Match: RPOA_EUCGG (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus GN=rpoA PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.2e-31
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTR+ASICVKGP CVTAQDIILP SVEIVDNTQ+IANLTEPINLCI L+I
Sbjct: 92  KEIVLRSNLYGTRNASICVKGPGCVTAQDIILPTSVEIVDNTQYIANLTEPINLCIGLQI 151

Query: 291 ERNRGYRIQTPNNFQD 307
           ERNRGY I+TP NFQD
Sbjct: 152 ERNRGYHIKTPKNFQD 167

[Close]
BLAST of Lsi11G010620 vs. Swiss-Prot
Match: RPOA_LIRTU (DNA-directed RNA polymerase subunit alpha OS=Liriodendron tulipifera GN=rpoA PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.6e-30
Identity = 63/76 (82.89%), Postives = 73/76 (96.05%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRS+LYGTRDASICV+GPR VTAQDII PPSVEIVD TQHIA+LTEPI+LCIEL+I
Sbjct: 92  KEIVLRSHLYGTRDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQI 151

Query: 291 ERNRGYRIQTPNNFQD 307
           ER+RGYR++TPNN+QD
Sbjct: 152 ERDRGYRMKTPNNYQD 167

[Close]
BLAST of Lsi11G010620 vs. TrEMBL
Match: X2F117_LAGSI (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.4e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. TrEMBL
Match: X2F1W9_LAGSI (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.4e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. TrEMBL
Match: X2EY31_LAGSI (RNA polymerase alpha subunit (Fragment) OS=Lagenaria siceraria GN=rpoA PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.4e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. TrEMBL
Match: X2EY79_LAGSI (RNA polymerase alpha subunit (Fragment) OS=Lagenaria siceraria GN=rpoA PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.4e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. TrEMBL
Match: X2EZ57_LAGSI (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.4e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. TAIR10
Match: ATCG00740.1 (ATCG00740.1 RNA polymerase subunit alpha)

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-28
Identity = 57/75 (76.00%), Postives = 68/75 (90.67%), Query Frame = 1 

Query: 232 KIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIE 291
           +IVLRSNLYGTR+A ICV+GP  +TA+DIILPP+VEI+DNTQHIA LTEPI+LCIELKIE
Sbjct: 93  EIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIE 152

Query: 292 RNRGYRIQTPNNFQD 307
           RNRGY ++  NNF+D
Sbjct: 153 RNRGYSLKMSNNFED 167

[Close]
BLAST of Lsi11G010620 vs. TAIR10
Match: AT5G18240.1 (AT5G18240.1 myb-related protein 1)

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-08
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 

Query: 6  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK 44
          LH+RFVEAV+      +ATPK++M VMGI GL+LYHLKSHL+K
Sbjct: 54 LHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQK 96

[Close]
BLAST of Lsi11G010620 vs. TAIR10
Match: AT3G04030.3 (AT3G04030.3 Homeodomain-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 

Query: 6  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK 44
          LH+RF+EAV+      +ATPK++M VMGI GL+LYHLKSHL+K
Sbjct: 54 LHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQK 96

[Close]
BLAST of Lsi11G010620 vs. TAIR10
Match: AT1G79430.2 (AT1G79430.2 Homeodomain-like superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-07
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 3  SLKLHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK 44
          +++LH+RFV+AV       +ATPK++M VMG+ GL+LYHLKSHL+K
Sbjct: 40 TVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQK 85

[Close]
BLAST of Lsi11G010620 vs. TAIR10
Match: AT3G12730.1 (AT3G12730.1 Homeodomain-like superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-07
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 5  KLHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK 44
          +LH+RFV+AV       +ATPK++M VMG+ GL+LYHLKSHL+K
Sbjct: 31 ELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQK 74

[Close]
BLAST of Lsi11G010620 vs. NCBI nr
Match: gi|595647453|gb|AHM90879.1| (RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. NCBI nr
Match: gi|595645831|gb|AHM89284.1| (RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. NCBI nr
Match: gi|595647753|gb|AHM91174.1| (RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. NCBI nr
Match: gi|595647692|gb|AHM91114.1| (RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

[Close]
BLAST of Lsi11G010620 vs. NCBI nr
Match: gi|595647812|gb|AHM91232.1| (RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 231 KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 290
           K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI
Sbjct: 92  KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKI 151

Query: 291 ERNRGYRIQTPNNFQDA 308
           ERNRGYRIQTPNNFQDA
Sbjct: 152 ERNRGYRIQTPNNFQDA 168

The following BLAST results are available for this feature:
BLAST of Lsi11G010620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOA_CUCSA1.3e-3594.81DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1[more]
RPOA_MORIN7.6e-3390.79DNA-directed RNA polymerase subunit alpha OS=Morus indica GN=rpoA PE=3 SV=1[more]
RPOA_SOYBN1.1e-3188.16DNA-directed RNA polymerase subunit alpha OS=Glycine max GN=rpoA PE=3 SV=1[more]
RPOA_EUCGG4.2e-3186.84DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus... [more]
RPOA_LIRTU4.6e-3082.89DNA-directed RNA polymerase subunit alpha OS=Liriodendron tulipifera GN=rpoA PE=... [more]
BLAST of Lsi11G010620 vs. TrEMBL
Match NameE-valueIdentityDescription
X2F117_LAGSI7.4e-3597.40DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV... [more]
X2F1W9_LAGSI7.4e-3597.40DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV... [more]
X2EY31_LAGSI7.4e-3597.40RNA polymerase alpha subunit (Fragment) OS=Lagenaria siceraria GN=rpoA PE=4 SV=1[more]
X2EY79_LAGSI7.4e-3597.40RNA polymerase alpha subunit (Fragment) OS=Lagenaria siceraria GN=rpoA PE=4 SV=1[more]
X2EZ57_LAGSI7.4e-3597.40DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV... [more]
BLAST of Lsi11G010620 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00740.12.7e-2876.00ATCG00740.1 RNA polymerase subunit alpha[more]
AT5G18240.19.0e-0865.12 myb-related protein 1[more]
AT3G04030.31.2e-0762.79 Homeodomain-like superfamily protein[more]
AT1G79430.21.5e-0756.52 Homeodomain-like superfamily protein[more]
AT3G12730.12.6e-0759.09 Homeodomain-like superfamily protein[more]
BLAST of Lsi11G010620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595647453|gb|AHM90879.1|1.1e-3497.40RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria][more]
gi|595645831|gb|AHM89284.1|1.1e-3497.40RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria][more]
gi|595647753|gb|AHM91174.1|1.1e-3497.40RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria][more]
gi|595647692|gb|AHM91114.1|1.1e-3497.40RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria][more]
gi|595647812|gb|AHM91232.1|1.1e-3497.40RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003899DNA-directed RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR011262DNA-dir_RNA_pol_insert
IPR009057Homeobox-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G010620.1Lsi11G010620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 5..44
score: 2.
IPR011262DNA-directed RNA polymerase, insert domainGENE3DG3DSA:2.170.120.12coord: 231..303
score: 1.3
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 224..297
score: 2.
IPR011262DNA-directed RNA polymerase, insert domainunknownSSF56553Insert subdomain of RNA polymerase alpha subunitcoord: 231..303
score: 9.42
NoneNo IPR availablePANTHERPTHR32108FAMILY NOT NAMEDcoord: 231..306
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G010620Bottle gourd (USVL1VR-Ls)lsilsiB021
Lsi11G010620Cucumber (Gy14) v1cgylsiB146
Lsi11G010620Cucumber (Gy14) v1cgylsiB361
Lsi11G010620Cucurbita maxima (Rimu)cmalsiB092
Lsi11G010620Cucurbita maxima (Rimu)cmalsiB472
Lsi11G010620Cucurbita maxima (Rimu)cmalsiB562
Lsi11G010620Cucurbita maxima (Rimu)cmalsiB784
Lsi11G010620Cucurbita moschata (Rifu)cmolsiB089
Lsi11G010620Cucurbita moschata (Rifu)cmolsiB457
Lsi11G010620Cucurbita moschata (Rifu)cmolsiB545
Lsi11G010620Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G010620Cucurbita pepo (Zucchini)cpelsiB533
Lsi11G010620Cucurbita pepo (Zucchini)cpelsiB605
Lsi11G010620Wild cucumber (PI 183967)cpilsiB097
Lsi11G010620Wild cucumber (PI 183967)cpilsiB435
Lsi11G010620Wild cucumber (PI 183967)cpilsiB507
Lsi11G010620Cucumber (Chinese Long) v2culsiB102
Lsi11G010620Cucumber (Chinese Long) v2culsiB495
Lsi11G010620Melon (DHL92) v3.5.1lsimeB097
Lsi11G010620Melon (DHL92) v3.5.1lsimeB120
Lsi11G010620Watermelon (Charleston Gray)lsiwcgB090
Lsi11G010620Watermelon (Charleston Gray)lsiwcgB097
Lsi11G010620Watermelon (97103) v1lsiwmB106
Lsi11G010620Cucumber (Gy14) v2cgyblsiB090
Lsi11G010620Cucumber (Gy14) v2cgyblsiB463
Lsi11G010620Melon (DHL92) v3.6.1lsimedB127
Lsi11G010620Melon (DHL92) v3.6.1lsimedB103
Lsi11G010620Silver-seed gourdcarlsiB186
Lsi11G010620Silver-seed gourdcarlsiB599
Lsi11G010620Silver-seed gourdcarlsiB809
Lsi11G010620Cucumber (Chinese Long) v3cuclsiB109
Lsi11G010620Cucumber (Chinese Long) v3cuclsiB530
Lsi11G010620Watermelon (97103) v2lsiwmbB086
Lsi11G010620Wax gourdlsiwgoB115
Lsi11G010620Wax gourdlsiwgoB128