Lsi11G010580 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi11G010580
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionChloroplast envelope membrane protein
Locationchr11 : 18352128 .. 18354814 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGGATTGATATTAGTCTGGATACAACAAAATAATTCTATTAGATCTAATGTAAAAAACCAGATTTGAATGATCCTGTATTAAGAGTTAAATTGGCTAAGGGTATGGGTCATAATTATTACGGAGAACCGACATGGCTCAGTGATCTTTTATATATTTTTTCAATAGTAATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATAATTGGTGAACCCATAGATCCATTTGCAACTCCTTTGGAAATATTGCCGAAATGGTATTTCTTTCTCATATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATAGTTTCAAATACTTCATAATAGCATTCATCTGACTTGTAATAGAACTTATATTTGATATAAATATTAGTAGTGTAGAGAGTTAACGAATGAAGTGAGTTCATTAAAAAATCAAAGACGAAAAAATGGCAAAAATGAAAGCGTTCATTCCCCTTTTATATCTTGCATCTATAGTATTTTTGCCCTGGTGGATCTCTCTTTCATTTAATAAAAGCCTAGAATCTTAGGTTACTAATTGGTGGAATACTGGTCAATCTGAATTTTTTTAATGATATTCAAGAAAATAGTATTATAAAAAAAAGTTATACAATTAGAGGAACTCTTTCTCTTGGACGAAATGCTAAAAGAATATCCAGAAATACATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAACGATCCAATTGATCAAGATGCACAATGAGGATCGTATCCATACGATTTTGCACTTCTCGACAAATATAATTTGTTTTGTTATTCTAAGTGGTTATTCTATTCTTGGTAATGAAGAACTTGTTATTGTTAACTCTTGGGTTCAAGAGTTTTTATATAACTTAATCGACACAATAAAAACTTTTTCTATTCTTTTATTAACTTATTTATGTATAGAATTCCATTCGCCCCATGGTTGGGAACTAATGATCGGATCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCAACTTCGTTTCCACTTTTCCAGTCATTCTTAACACAATTTTTAAATATTGGATCTTCCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATTCAATGAATGACTAAACAATCTAATGTTTGTTTACTTTGTACATAAGTAAAACATTCAAAATTGTACTTATTCCTTCTACCCATCCCGAAAGATGCCTCCTATATTCGAGTAACATTTTTTAGTAAATAGCATGCCCCTCAACTTTTCAAAAGTTTCAAAAATACTCTAACTCAAAAAAGTTCAAATATATCTTCACCGAAATTATGAACAGAAACTGTTAATACCTCGTTGCAAAAATAAATTTAAAATAAAAAGAAAGTTTAAAATTGTTCCTAACATTAATATGGTGATTAATTTATTTGAAGTTTTCTTAAGTTCGAAAAGAATGAACTTTAAACAAATTATAAAAATATTTTCATTCTTTTCATATATCAATTCTTAGGTTACACCAATTTTCTCATCAACCAAAATTTTAAGTTAAAACACAAAATCTCATAAAATCTCACAAAATTCTAAAATCAAAATCTCCCCTTAAACACACTCAACTGCTAACGTTTTTTTTTTTTTTTTTTTTTTTNACATGGCTCAGTGATCTTTTATATATTTTTTCAATAGTAATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATAATTGGTGAACCCATAGATCCATTTGCAACTCCTTTGGAAATATTGCCGAAATGGTATTTCTTTCTCATATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATAGTTTCAAATACTTCATAATAGCATTCATCTGACTTGTAATAGAACTTATATTTGATATAAATATTAGTAGTGTAGAGAGTTAACGAATGAAGTGAGTTCATTAAAAAATCAAAGACGAAAAAATGGCAAAAATGAAAGCGTTCATTCCCCTTTTATATCTTGCATCTATAGTATTTTTGCCCTGGTGGATCTCTCTTTCATTTAATAAAAGCCTAGAATCTTAGGTTACTAATTGGTGGAATACTGGTCAATCTGAATTTTTTTAATGATATTCAAGAAAATAGTATTATAAAAAAAAGTTATACAATTAGAGGAACTCTTTCTCTTGGACGAAATGCTAAAAGAATATCCAGAAATACATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAACGATCCAATTGATCAAGATGCACAATGAGGATCGTATCCATACGATTTTGCACTTCTCGACAAATATAATTTGTTTTGTTATTCTAAGTGGTTATTCTATTCTTGGTAATGAAGAACTTGTTATTGTTAACTCTTGGGTTCAAGAGTTTTTATATAACTTAATCGACACAATAAAAACTTTTTCTATTCTTTTATTAACTTATTTATGTATAGAATTCCATTCGCCCCATGGTTGGGAACTAATGATCGGATCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCAACTTCGTTTCCACTTTTCCAGTCATTCTTAACACAATTTTTAAATATTGGATCTTCCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATTCAATGAATGACTAA

mRNA sequence

ATGGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATAATTGGTGAACCCATAGATCCATTTGCAACTCCTTTGGAAATATTGCCGAAATGGTATTTCTTTCTCATATTTCAAATACTTCGTACAGTGCCAAATAAAGAGTTAACGAATGAAGTGAGTTCATTAAAAAATCAAAGACGAAAAAATGGCAAAAATGAAAGCGTTCATTCCCCTTTTATATCTTGCATCTATAAGGAACTCTTTCTCTTGGACGAAATGCTAAAAGAATATCCAGAAATACATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAACGATCCAATTGATCAAGATGCACAATGAGGATCGTATCCATACGATTTTGCACTTCTCGACAAATATAATTTGTTTTGTTATTCTAAGTGGTTATTCTATTCTTGGTAATGAAGAACTTGTTATTGTTAACTCTTGGGTTCAAGAGTTTTTATATAACTTAATCGACACAATAAAAACTTTTTCTATTCTTTTATTAACTTATTTATGTATAGAATTCCATTCGCCCCATGGTTGGGAACTAATGATCGGATCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCAACTTCGTTTCCACTTTTCCAGTCATTCTTAACACAATTTTTAAATATTGGATCTTCCGTTATTTAAATCGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATAATTGGTGAACCCATAGATCCATTTGCAACTCCTTTGGAAATATTGCCGAAATGGTATTTCTTTCTCATATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATATGTAGAGAGTTAACGAATGAAGTGAGTTCATTAAAAAATCAAAGACGAAAAAATGGCAAAAATGAAAGCGTTCATTCCCCTTTTATATCTTGCATCTATAAGGAACTCTTTCTCTTGGACGAAATGCTAAAAGAATATCCAGAAATACATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAACGATCCAATTGATCAAGATGCACAATGAGGATCGTATCCATACGATTTTGCACTTCTCGACAAATATAATTTGTTTTGTTATTCTAAGTGGTTATTCTATTCTTGGTAATGAAGAACTTGTTATTGTTAACTCTTGGGTTCAAGAGTTTTTATATAACTTAATCGACACAATAAAAACTTTTTCTATTCTTTTATTAACTTATTTATGTATAGAATTCCATTCGCCCCATGGTTGGGAACTAATGATCGGATCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCAACTTCGTTTCCACTTTTCCAGTCATTCTTAACACAATTTTTAAATATTGGATCTTCCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATTCAATGAATGACTAA

Coding sequence (CDS)

ATGGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATAATTGGTGAACCCATAGATCCATTTGCAACTCCTTTGGAAATATTGCCGAAATGGTATTTCTTTCTCATATTTCAAATACTTCGTACAGTGCCAAATAAAGAGTTAACGAATGAAGTGAGTTCATTAAAAAATCAAAGACGAAAAAATGGCAAAAATGAAAGCGTTCATTCCCCTTTTATATCTTGCATCTATAAGGAACTCTTTCTCTTGGACGAAATGCTAAAAGAATATCCAGAAATACATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAACGATCCAATTGATCAAGATGCACAATGAGGATCGTATCCATACGATTTTGCACTTCTCGACAAATATAATTTGTTTTGTTATTCTAAGTGGTTATTCTATTCTTGGTAATGAAGAACTTGTTATTGTTAACTCTTGGGTTCAAGAGTTTTTATATAACTTAATCGACACAATAAAAACTTTTTCTATTCTTTTATTAACTTATTTATGTATAGAATTCCATTCGCCCCATGGTTGGGAACTAATGATCGGATCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCAACTTCGTTTCCACTTTTCCAGTCATTCTTAACACAATTTTTAAATATTGGATCTTCCGTTATTTAAATCGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATAATTGGTGAACCCATAGATCCATTTGCAACTCCTTTGGAAATATTGCCGAAATGGTATTTCTTTCTCATATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATATGTAGAGAGTTAACGAATGAAGTGAGTTCATTAAAAAATCAAAGACGAAAAAATGGCAAAAATGAAAGCGTTCATTCCCCTTTTATATCTTGCATCTATAAGGAACTCTTTCTCTTGGACGAAATGCTAAAAGAATATCCAGAAATACATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAACGATCCAATTGATCAAGATGCACAATGAGGATCGTATCCATACGATTTTGCACTTCTCGACAAATATAATTTGTTTTGTTATTCTAAGTGGTTATTCTATTCTTGGTAATGAAGAACTTGTTATTGTTAACTCTTGGGTTCAAGAGTTTTTATATAACTTAATCGACACAATAAAAACTTTTTCTATTCTTTTATTAACTTATTTATGTATAGAATTCCATTCGCCCCATGGTTGGGAACTAATGATCGGATCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTATATCCAACTTCGTTTCCACTTTTCCAGTCATTCTTAACACAATTTTTAAATATTGGATCTTCCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATTCAATGAATGACTAA

Protein sequence

MGTIACNVGLAVLEPSIIGEPIDPFATPLEILPKWYFFLIFQILRTVPNKELTNEVSSLKNQRRKNGKNESVHSPFISCIYKELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGYSILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGFSHNDQIISNFVSTFPVILNTIFKYWIFRYLNRTIACNVGLAVLEPSIIGEPIDPFATPLEILPKWYFFLIFQILRTVPNKLLGVLLICRELTNEVSSLKNQRRKNGKNESVHSPFISCIYKELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGYSILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGFSHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND
BLAST of Lsi11G010580 vs. Swiss-Prot
Match: CEMA_CUCSA (Chloroplast envelope membrane protein OS=Cucumis sativus GN=cemA PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 6.3e-82
Identity = 153/166 (92.17%), Postives = 158/166 (95.18%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRI I KETIQLIKMHNEDRIHTILHFSTNIICFVILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIAISKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS+ VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHS+ND
Sbjct: 184 SHNDQIISSLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSLND 229

BLAST of Lsi11G010580 vs. Swiss-Prot
Match: CEMA_GOSHI (Chloroplast envelope membrane protein OS=Gossypium hirsutum GN=cemA PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 7.0e-81
Identity = 151/180 (83.89%), Postives = 163/180 (90.56%), Query Frame = 1

Query: 308 KNESVHSPFISCIYKELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILH 367
           + +S+   FI    +ELFLLDEM+KEYPE HLQKLRIGI KETIQLIK+HNED IHTILH
Sbjct: 52  QEKSILEQFIEV--EELFLLDEMIKEYPETHLQKLRIGIQKETIQLIKLHNEDHIHTILH 111

Query: 368 FSTNIICFVILSGYSILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHG 427
           FSTN+ICFVILSGYSILGNEEL+I+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHG
Sbjct: 112 FSTNLICFVILSGYSILGNEELLILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHG 171

Query: 428 WELMIGSVYKDFGFSHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 487
           WELMIGS+YKDFGF+HNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 172 WELMIGSIYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. Swiss-Prot
Match: CEMA_GOSBA (Chloroplast envelope membrane protein OS=Gossypium barbadense GN=cemA PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.0e-80
Identity = 150/180 (83.33%), Postives = 162/180 (90.00%), Query Frame = 1

Query: 308 KNESVHSPFISCIYKELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILH 367
           + +S+   FI    +ELFLLDEM+KEYPE HLQKLRIGI KETIQLIK+HNED IHTILH
Sbjct: 52  QEKSILEQFIEV--EELFLLDEMIKEYPETHLQKLRIGIQKETIQLIKLHNEDHIHTILH 111

Query: 368 FSTNIICFVILSGYSILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHG 427
           FSTN+ICFVILSGYSILGNEEL+I+NSW QEFLYNL DTIK FSILLLT LCI FHSPHG
Sbjct: 112 FSTNLICFVILSGYSILGNEELLILNSWAQEFLYNLSDTIKAFSILLLTDLCIGFHSPHG 171

Query: 428 WELMIGSVYKDFGFSHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 487
           WELMIGS+YKDFGF+HNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 172 WELMIGSIYKDFGFTHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. Swiss-Prot
Match: CEMA_MANES (Chloroplast envelope membrane protein OS=Manihot esculenta GN=cemA PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.9e-78
Identity = 159/233 (68.24%), Postives = 179/233 (76.82%), Query Frame = 1

Query: 256 FATPLEILPKWYFFLIFQILRTVPNKLLGVLLI-CRELTNEVSSLKNQRRKNGKNESVHS 315
           + T +  LP W  FL         NK L   +I C   +   + L + + K     S+  
Sbjct: 14  YLTSIVFLPWWVSFLF--------NKSLESWIINCCNTSKSETFLNDIQEK-----SILE 73

Query: 316 PFISCIYKELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIIC 375
            F+    ++L  L+E++KEYPE HLQK RIGI+KETIQLIKMHNEDRIHTILHFSTNIIC
Sbjct: 74  KFMEL--EDLVRLNEIIKEYPETHLQKFRIGIHKETIQLIKMHNEDRIHTILHFSTNIIC 133

Query: 376 FVILSGYSILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGS 435
           F+ILSGYSIL NEEL+I+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGS
Sbjct: 134 FIILSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGS 193

Query: 436 VYKDFGFSHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           VYKDFGF+HNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 194 VYKDFGFAHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 231

BLAST of Lsi11G010580 vs. Swiss-Prot
Match: CEMA_VITVI (Chloroplast envelope membrane protein OS=Vitis vinifera GN=cemA PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.9e-78
Identity = 148/180 (82.22%), Postives = 162/180 (90.00%), Query Frame = 1

Query: 308 KNESVHSPFISCIYKELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILH 367
           + +S+   FI    +ELFLLDEM+KE PE HLQKLR+GI+KETIQLIKM+NED IHTILH
Sbjct: 52  QEKSILEKFIEL--EELFLLDEMIKECPETHLQKLRMGIHKETIQLIKMYNEDPIHTILH 111

Query: 368 FSTNIICFVILSGYSILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHG 427
           FSTNIICFVILSGYSILGNEEL+I+NSW+Q+FLYNL DTIK FSILLLT LCI FHSPHG
Sbjct: 112 FSTNIICFVILSGYSILGNEELLILNSWIQQFLYNLSDTIKAFSILLLTDLCIGFHSPHG 171

Query: 428 WELMIGSVYKDFGFSHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 487
           WELMIGSVYKDFGF+HNDQIIS  VSTFPVIL+TI KYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 172 WELMIGSVYKDFGFAHNDQIISGLVSTFPVILDTILKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. TrEMBL
Match: X2F1U1_LAGSI (envelope membrane protein, chloroplastic OS=Lagenaria siceraria GN=cemA PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 7.5e-82
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. TrEMBL
Match: A0A0S2IE38_9ROSI (CemA OS=Cucurbita argyrosperma GN=cemA PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 9.8e-82
Identity = 155/166 (93.37%), Postives = 159/166 (95.78%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICF+ILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFIILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. TrEMBL
Match: A0A0S2IGQ1_CUCPE (CemA OS=Cucurbita pepo subsp. pepo GN=cemA PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 9.8e-82
Identity = 155/166 (93.37%), Postives = 159/166 (95.78%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICF+ILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFIILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. TrEMBL
Match: A0A0S2IF82_9ROSI (CemA OS=Cucurbita lundelliana GN=cemA PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 9.8e-82
Identity = 155/166 (93.37%), Postives = 159/166 (95.78%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICF+ILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFIILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. TrEMBL
Match: A0A0S2IDY0_9ROSI (CemA OS=Cucurbita argyrosperma var. palmeri GN=cemA PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 9.8e-82
Identity = 155/166 (93.37%), Postives = 159/166 (95.78%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICF+ILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFIILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. TAIR10
Match: ATCG00530.1 (ATCG00530.1 CemA-like proton extrusion protein-related)

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-71
Identity = 130/166 (78.31%), Postives = 147/166 (88.55%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELF LDEM+KEYPE +LQ+ R+GI+KETIQ IK+HNE  IHTILHFSTN+I FVILSGY
Sbjct: 64  EELFQLDEMIKEYPETNLQQFRLGIHKETIQFIKIHNEYNIHTILHFSTNLISFVILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           S  G E+L I+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIG +YKDFGF
Sbjct: 124 SFWGKEKLFILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGYIYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           +H +QI+S  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYH++ND
Sbjct: 184 AHYEQILSGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHAIND 229

BLAST of Lsi11G010580 vs. TAIR10
Match: ATCG00730.1 (ATCG00730.1 photosynthetic electron transfer D)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-22
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1

Query: 234 TIACNVGLAVLEPSIIGEPIDPFATPLEILPKWYFFLIFQILRTVPNKLLGVLLI 289
           TIACNVGLAVLEPS+IGEP DPFATPLEILP+WYFF +FQILRTVPNKLLGVLL+
Sbjct: 47  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLM 101

BLAST of Lsi11G010580 vs. TAIR10
Match: AT4G31040.1 (AT4G31040.1 CemA-like proton extrusion protein-related)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-09
Identity = 28/88 (31.82%), Postives = 51/88 (57.95%), Query Frame = 1

Query: 398 EFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGFSHNDQIISNFVSTFPV 457
           + + N+ DT K F I+L+T + + +HS  GWE ++  + + +G       I+ F+   PV
Sbjct: 348 KIINNISDTGKAFLIILITDIFLGYHSESGWETLLEIIMEHYGLEVEQSTITIFICLVPV 407

Query: 458 ILNTIFKYWIFRYLNRVSPSLVVIYHSM 486
           I++   K W+F++L R+SP +  I+  M
Sbjct: 408 IMDACVKLWLFKFLPRLSPRVSNIFQEM 435

BLAST of Lsi11G010580 vs. NCBI nr
Match: gi|595645240|gb|AHM88703.1| (chloroplast envelope membrane protein (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 312.8 bits (800), Expect = 1.1e-81
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. NCBI nr
Match: gi|952954401|gb|ALO21765.1| (cemA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 155/166 (93.37%), Postives = 159/166 (95.78%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICF+ILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFIILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TIFKYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTIFKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. NCBI nr
Match: gi|952954755|gb|ALO22113.1| (cemA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 310.1 bits (793), Expect = 7.0e-81
Identity = 154/166 (92.77%), Postives = 158/166 (95.18%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICF+ILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFIILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TI KYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTILKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. NCBI nr
Match: gi|346578203|ref|YP_004841795.1| (chloroplast envelope membrane protein [Cucumis melo subsp. melo])

HSP 1 Score: 308.1 bits (788), Expect = 2.7e-80
Identity = 154/166 (92.77%), Postives = 157/166 (94.58%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIH ILHFSTNIICFVILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHMILHFSTNIICFVILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEELVI+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELVILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TI KYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTILKYWIFRYLNRVSPSLVVIYHSMND 229

BLAST of Lsi11G010580 vs. NCBI nr
Match: gi|952954800|gb|ALO22157.1| (cemA (plastid) [Cucurbita foetidissima])

HSP 1 Score: 307.4 bits (786), Expect = 4.5e-80
Identity = 153/166 (92.17%), Postives = 157/166 (94.58%), Query Frame = 1

Query: 322 KELFLLDEMLKEYPEIHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFVILSGY 381
           +ELFLLDEMLKEYPE HLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICF+ILSGY
Sbjct: 64  EELFLLDEMLKEYPETHLQKLRIGIYKETIQLIKMHNEDRIHTILHFSTNIICFIILSGY 123

Query: 382 SILGNEELVIVNSWVQEFLYNLIDTIKTFSILLLTYLCIEFHSPHGWELMIGSVYKDFGF 441
           SILGNEEL I+NSWVQEFLYNL DTIK FSILLLT LCI FHSPHGWELMIGSVYKDFGF
Sbjct: 124 SILGNEELGILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGF 183

Query: 442 SHNDQIISNFVSTFPVILNTIFKYWIFRYLNRVSPSLVVIYHSMND 488
           SHNDQIIS  VSTFPVIL+TI KYWIFRYLNRVSPSLVVIYHSMND
Sbjct: 184 SHNDQIISGLVSTFPVILDTILKYWIFRYLNRVSPSLVVIYHSMND 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CEMA_CUCSA6.3e-8292.17Chloroplast envelope membrane protein OS=Cucumis sativus GN=cemA PE=3 SV=1[more]
CEMA_GOSHI7.0e-8183.89Chloroplast envelope membrane protein OS=Gossypium hirsutum GN=cemA PE=3 SV=1[more]
CEMA_GOSBA2.0e-8083.33Chloroplast envelope membrane protein OS=Gossypium barbadense GN=cemA PE=3 SV=1[more]
CEMA_MANES1.9e-7868.24Chloroplast envelope membrane protein OS=Manihot esculenta GN=cemA PE=3 SV=1[more]
CEMA_VITVI1.9e-7882.22Chloroplast envelope membrane protein OS=Vitis vinifera GN=cemA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
X2F1U1_LAGSI7.5e-8293.98envelope membrane protein, chloroplastic OS=Lagenaria siceraria GN=cemA PE=3 SV=... [more]
A0A0S2IE38_9ROSI9.8e-8293.37CemA OS=Cucurbita argyrosperma GN=cemA PE=3 SV=1[more]
A0A0S2IGQ1_CUCPE9.8e-8293.37CemA OS=Cucurbita pepo subsp. pepo GN=cemA PE=3 SV=1[more]
A0A0S2IF82_9ROSI9.8e-8293.37CemA OS=Cucurbita lundelliana GN=cemA PE=3 SV=1[more]
A0A0S2IDY0_9ROSI9.8e-8293.37CemA OS=Cucurbita argyrosperma var. palmeri GN=cemA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00530.13.1e-7178.31ATCG00530.1 CemA-like proton extrusion protein-related[more]
ATCG00730.12.7e-2289.09ATCG00730.1 photosynthetic electron transfer D[more]
AT4G31040.12.0e-0931.82 CemA-like proton extrusion protein-related[more]
Match NameE-valueIdentityDescription
gi|595645240|gb|AHM88703.1|1.1e-8193.98chloroplast envelope membrane protein (chloroplast) [Lagenaria siceraria][more]
gi|952954401|gb|ALO21765.1|1.4e-8193.37cemA (plastid) [Cucurbita argyrosperma][more]
gi|952954755|gb|ALO22113.1|7.0e-8192.77cemA (plastid) [Cucurbita ficifolia][more]
gi|346578203|ref|YP_004841795.1|2.7e-8092.77chloroplast envelope membrane protein [Cucumis melo subsp. melo][more]
gi|952954800|gb|ALO22157.1|4.5e-8092.17cemA (plastid) [Cucurbita foetidissima][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0009055electron carrier activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR005798Cyt_b/b6_C
IPR004282CemA
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G010580.1Lsi11G010580.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004282Chloroplast envelope membrane protein, CemAPFAMPF03040CemAcoord: 80..234
score: 9.2E-48coord: 320..487
score: 2.3
IPR005798Cytochrome b/b6, C-terminalPFAMPF00032Cytochrom_B_Ccoord: 253..289
score: 2.5E-9coord: 22..51
score: 3.
IPR005798Cytochrome b/b6, C-terminalPROFILEPS51003CYTB_CTERcoord: 1..50
score: 9.314coord: 252..288
score: 10
IPR005798Cytochrome b/b6, C-terminalunknownSSF81648a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 3..51
score: 3.66E-13coord: 213..288
score: 1.96
NoneNo IPR availableunknownCoilCoilcoord: 49..69
scor
NoneNo IPR availableGENE3DG3DSA:1.10.287.980coord: 254..289
score: 5.4E-11coord: 23..50
score: 1.
NoneNo IPR availableGENE3DG3DSA:1.20.5.510coord: 1..21
score: 1.6E-6coord: 234..252
score: 2.
NoneNo IPR availablePANTHERPTHR33650FAMILY NOT NAMEDcoord: 320..487
score: 9.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G010580Bottle gourd (USVL1VR-Ls)lsilsiB021
Lsi11G010580Cucumber (Gy14) v1cgylsiB146
Lsi11G010580Cucumber (Gy14) v1cgylsiB361
Lsi11G010580Cucurbita maxima (Rimu)cmalsiB092
Lsi11G010580Cucurbita maxima (Rimu)cmalsiB472
Lsi11G010580Cucurbita maxima (Rimu)cmalsiB562
Lsi11G010580Cucurbita maxima (Rimu)cmalsiB784
Lsi11G010580Cucurbita moschata (Rifu)cmolsiB089
Lsi11G010580Cucurbita moschata (Rifu)cmolsiB457
Lsi11G010580Cucurbita moschata (Rifu)cmolsiB545
Lsi11G010580Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G010580Cucurbita pepo (Zucchini)cpelsiB533
Lsi11G010580Cucurbita pepo (Zucchini)cpelsiB605
Lsi11G010580Wild cucumber (PI 183967)cpilsiB097
Lsi11G010580Wild cucumber (PI 183967)cpilsiB435
Lsi11G010580Wild cucumber (PI 183967)cpilsiB507
Lsi11G010580Cucumber (Chinese Long) v2culsiB102
Lsi11G010580Cucumber (Chinese Long) v2culsiB495
Lsi11G010580Melon (DHL92) v3.5.1lsimeB097
Lsi11G010580Melon (DHL92) v3.5.1lsimeB120
Lsi11G010580Watermelon (Charleston Gray)lsiwcgB090
Lsi11G010580Watermelon (Charleston Gray)lsiwcgB097
Lsi11G010580Watermelon (97103) v1lsiwmB088
Lsi11G010580Watermelon (97103) v1lsiwmB106
Lsi11G010580Cucumber (Gy14) v2cgyblsiB090
Lsi11G010580Cucumber (Gy14) v2cgyblsiB463
Lsi11G010580Melon (DHL92) v3.6.1lsimedB127
Lsi11G010580Melon (DHL92) v3.6.1lsimedB103
Lsi11G010580Silver-seed gourdcarlsiB186
Lsi11G010580Silver-seed gourdcarlsiB599
Lsi11G010580Silver-seed gourdcarlsiB809
Lsi11G010580Cucumber (Chinese Long) v3cuclsiB109
Lsi11G010580Cucumber (Chinese Long) v3cuclsiB530
Lsi11G010580Watermelon (97103) v2lsiwmbB086
Lsi11G010580Wax gourdlsiwgoB115