Lsi11G010050 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi11G010050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionATP-dependent DNA helicase MPH1
Locationchr11 : 16980604 .. 16981395 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTATGACAGAAAAGAGAACATGCACCCAGTGATATTTGATGACTTATGCAGAATGCTGATTGCTGCTTATGTACATTTCATTATTTAAATGATGGAATCAAAATTTGGCAGGCACATGTTTGGTGAAATATCTGGTTTGCTTAGTGATTGATGAAGCCCATCGAGCACTTGGGAATTACTCTTATTGTGTTGCAGTTCGTGAGGTCTGTTGTTCAGTTTGTACTGATTTTCCATTTCTGTTGGATCTTTCACTTTGAGTTTATTACTTTAATTTGCAAGGTTTGTATGCAGTTACCAGTATGATTTTGAATGTACAGTTAATGATGGTACCCGTGCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATGTAAGTTTCTATCAATTTTTTTTTTCCAGATTGTTCAGATTGTTCTATATATTCTAAATCAGTTGCATTTACTCAGCAAAGAAGCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTGATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAATTGATTCAAGTATGCAAACCATGTCTTTAAGTGAATGATGTTCTTTTATTGTAGATTTGATATTGTAGCTGTAAACTTGTAGGTTGCAATGGGAGAAGATGCTGTTGAGATAAATAATGAGCTCTTGGAAGTTATCCGTCCATTTGTGGCTAAACTTTGTTCAATAGGAATTCTCCAAAATAGAGATTATAGAACGGTATGGTACAAATCTTTTGATGCGCATTAG

mRNA sequence

ATGATGTATGACAGAAAAGAGAACATGCACCCAGTGATATTTGATGACTTATGCAGAATGCTGATTGCTGCTTATCCCATCGAGCACTTGGGAATTACTCTTATTGTGTTGCAGTTCGTGAGTTACCAGTATGATTTTGAATGTACAGTTAATGATGGTACCCGTGCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATTTGCATTTACTCAGCAAAGAAGCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTGATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAATTGATTCAAGTTGCAATGGGAGAAGATGCTGTTGAGATAAATAATGAGCTCTTGGAAGTTATCCGTCCATTTGTGGCTAAACTTTGTTCAATAGGAATTCTCCAAAATAGAGATTATAGAACGGTATGGTACAAATCTTTTGATGCGCATTAG

Coding sequence (CDS)

ATGATGTATGACAGAAAAGAGAACATGCACCCAGTGATATTTGATGACTTATGCAGAATGCTGATTGCTGCTTATCCCATCGAGCACTTGGGAATTACTCTTATTGTGTTGCAGTTCGTGAGTTACCAGTATGATTTTGAATGTACAGTTAATGATGGTACCCGTGCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATTTGCATTTACTCAGCAAAGAAGCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTGATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAATTGATTCAAGTTGCAATGGGAGAAGATGCTGTTGAGATAAATAATGAGCTCTTGGAAGTTATCCGTCCATTTGTGGCTAAACTTTGTTCAATAGGAATTCTCCAAAATAGAGATTATAGAACGGTATGGTACAAATCTTTTGATGCGCATTAG

Protein sequence

MMYDRKENMHPVIFDDLCRMLIAAYPIEHLGITLIVLQFVSYQYDFECTVNDGTRATKNTSLNCHTRICIYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDAH
BLAST of Lsi11G010050 vs. Swiss-Prot
Match: FANCM_MOUSE (Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 28/88 (31.82%), Postives = 46/88 (52.27%), Query Frame = 1

Query: 65  HTRICIYSAKK----QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDA 124
           H RI   SA      + +QQ+I NL I  ++ R E   D+ PY H+R++E + V +GE+ 
Sbjct: 226 HFRILALSATPGSDIKAVQQVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEEL 285

Query: 125 VEINNELLEVIRPFVAKLCSIGILQNRD 149
             I    ++++  F + L    +L  RD
Sbjct: 286 GAIQKTYIQILETFASSLIHRNVLMKRD 313

BLAST of Lsi11G010050 vs. Swiss-Prot
Match: FANCM_HUMAN (Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 28/88 (31.82%), Postives = 44/88 (50.00%), Query Frame = 1

Query: 65  HTRICIYSAKK----QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDA 124
           H RI   SA      + +QQ+I NL I  ++ R E   D+  Y H+RK+E + V +GE+ 
Sbjct: 238 HFRILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEEL 297

Query: 125 VEINNELLEVIRPFVAKLCSIGILQNRD 149
             I    ++++  F   L    +L  RD
Sbjct: 298 AAIQKTYIQILESFARSLIQRNVLMRRD 325

BLAST of Lsi11G010050 vs. Swiss-Prot
Match: MPH1_NEUCR (ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mph1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 1

Query: 76  QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFV 135
           +G+Q +IDNL IS ++ R E   D+  YVH R I  I     ++ +E+ +   + ++P V
Sbjct: 317 EGVQDVIDNLGISHVEIRTEESIDIRQYVHSRDINTITFDPSDEMMEVRDLFSKALKPLV 376

Query: 136 AKLCSIGILQNRD 149
            KL S  I   RD
Sbjct: 377 TKLSSQNIYYGRD 389

BLAST of Lsi11G010050 vs. Swiss-Prot
Match: MPH1_CHAGB (ATP-dependent DNA helicase MPH1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MPH1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.2e-06
Identity = 25/73 (34.25%), Postives = 39/73 (53.42%), Query Frame = 1

Query: 76  QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFV 135
           +G+Q IIDNL IS ++ R E   D+  YVH R I+ +     ++  E+     + ++P V
Sbjct: 349 EGVQDIIDNLGISHVEIRTEESIDIRQYVHSRNIDTVTFDPSDEMHEVRGLFSKALKPLV 408

Query: 136 AKLCSIGILQNRD 149
            KL +  I   RD
Sbjct: 409 DKLSAQNIYYGRD 421

BLAST of Lsi11G010050 vs. TrEMBL
Match: A0A0A0LMN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G395190 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.8e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI+N+LLEV+R
Sbjct: 121 SKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLEVMR 180

Query: 133 PFVAKLCSIGILQNRDYRTVWYKSFDAH 161
           PFVAKL SIGILQNRDYRTVWYKSFDAH
Sbjct: 181 PFVAKLRSIGILQNRDYRTVWYKSFDAH 208

BLAST of Lsi11G010050 vs. TrEMBL
Match: A5BQE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000236 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 61/81 (75.31%), Postives = 74/81 (91.36%), Query Frame = 1

Query: 71  YSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEV 130
           Y AK+Q IQ IIDNLHISTL+YR+ESDHDVSPYVH+R +ELI+VAMG+DA+EINN LLEV
Sbjct: 99  YPAKQQSIQNIIDNLHISTLEYRNESDHDVSPYVHNRNVELIEVAMGQDAIEINNVLLEV 158

Query: 131 IRPFVAKLCSIGILQNRDYRT 152
           IRPFV +LC++G+LQNRD +T
Sbjct: 159 IRPFVIRLCAVGVLQNRDLQT 179

BLAST of Lsi11G010050 vs. TrEMBL
Match: F6GY82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0075g00150 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.8e-28
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K+Q IQ IIDNLHISTL+YR+ESDHDVSPYVH+R +ELI+VAMG+DA+EINN LLEVIR
Sbjct: 83  SKQQSIQNIIDNLHISTLEYRNESDHDVSPYVHNRNVELIEVAMGQDAIEINNVLLEVIR 142

Query: 133 PFVAKLCSIGILQNRDYRTVWYK 156
           PFV +LC++G+LQNRD +T+  K
Sbjct: 143 PFVIRLCAVGVLQNRDLQTMMKK 165

BLAST of Lsi11G010050 vs. TrEMBL
Match: A0A0D2SDU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G139300 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 61/106 (57.55%), Postives = 83/106 (78.30%), Query Frame = 1

Query: 48  CTVNDGTRATKNTSLNCHTRI-CIYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHD 107
           C +   +      S N +  I C YSAK+  IQQIIDNL+ISTL+YR+E DHDVSPY+H+
Sbjct: 18  CKLQLSSHCVLKLSCNLNAYIGCHYSAKQPAIQQIIDNLYISTLEYRNEHDHDVSPYIHN 77

Query: 108 RKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV 153
           RKIELI+V +G+DA ++NN+LLE+IRP+VAKL + G++QNRDY+T+
Sbjct: 78  RKIELIEVPLGQDASDVNNKLLEIIRPYVAKLHANGLIQNRDYQTL 123

BLAST of Lsi11G010050 vs. TrEMBL
Match: A0A067KRB2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11177 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.1e-25
Identity = 55/79 (69.62%), Postives = 72/79 (91.14%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K+Q IQ IIDNLHISTL+YR+E D DVSPYVH+RKIE+I+VA+G+DAV++N +LLEVIR
Sbjct: 298 SKQQAIQHIIDNLHISTLEYRNEDDPDVSPYVHNRKIEMIEVALGKDAVDVNKQLLEVIR 357

Query: 133 PFVAKLCSIGILQNRDYRT 152
           P+VA+L +IG+L NRDY+T
Sbjct: 358 PYVARLSAIGLLHNRDYKT 376

BLAST of Lsi11G010050 vs. TAIR10
Match: AT1G35530.2 (AT1G35530.2 DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-21
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K Q IQ IIDNL ISTL+YR+ESDHDV PYVHDRK+E+I+V +G+DA +++  L  VIR
Sbjct: 274 SKTQAIQGIIDNLQISTLEYRNESDHDVCPYVHDRKLEVIEVPLGQDADDVSKRLFHVIR 333

Query: 133 PFVAKLCSIGILQNRDYRTV 153
           P+  +L + G+  NRD +T+
Sbjct: 334 PYAVRLKNFGVNLNRDIQTL 353

BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|700207934|gb|KGN63053.1| (hypothetical protein Csa_2G395190 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 8.3e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI+N+LLEV+R
Sbjct: 121 SKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLEVMR 180

Query: 133 PFVAKLCSIGILQNRDYRTVWYKSFDAH 161
           PFVAKL SIGILQNRDYRTVWYKSFDAH
Sbjct: 181 PFVAKLRSIGILQNRDYRTVWYKSFDAH 208

BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|778672808|ref|XP_011649875.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI+N+LLEV+R
Sbjct: 296 SKHQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLEVMR 355

Query: 133 PFVAKLCSIGILQNRDYRTV 153
           PFVAKL SIGILQNRDYRT+
Sbjct: 356 PFVAKLRSIGILQNRDYRTL 375

BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|659081092|ref|XP_008441147.1| (PREDICTED: Fanconi anemia group M protein isoform X3 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 72/80 (90.00%), Postives = 78/80 (97.50%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K QG+QQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI+N+LLEV+R
Sbjct: 296 SKHQGVQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLEVMR 355

Query: 133 PFVAKLCSIGILQNRDYRTV 153
           PFVAKL SIGILQNRDYRT+
Sbjct: 356 PFVAKLRSIGILQNRDYRTL 375

BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|659081094|ref|XP_008441148.1| (PREDICTED: Fanconi anemia group M protein isoform X4 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 72/80 (90.00%), Postives = 78/80 (97.50%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K QG+QQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI+N+LLEV+R
Sbjct: 296 SKHQGVQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLEVMR 355

Query: 133 PFVAKLCSIGILQNRDYRTV 153
           PFVAKL SIGILQNRDYRT+
Sbjct: 356 PFVAKLRSIGILQNRDYRTL 375

BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|659081087|ref|XP_008441145.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 72/80 (90.00%), Postives = 78/80 (97.50%), Query Frame = 1

Query: 73  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIR 132
           +K QG+QQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI+N+LLEV+R
Sbjct: 296 SKHQGVQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEIDNKLLEVMR 355

Query: 133 PFVAKLCSIGILQNRDYRTV 153
           PFVAKL SIGILQNRDYRT+
Sbjct: 356 PFVAKLRSIGILQNRDYRTL 375

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FANCM_MOUSE3.7e-0731.82Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3[more]
FANCM_HUMAN1.1e-0631.82Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2[more]
MPH1_NEUCR1.4e-0635.62ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR2... [more]
MPH1_CHAGB9.2e-0634.25ATP-dependent DNA helicase MPH1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 1... [more]
Match NameE-valueIdentityDescription
A0A0A0LMN2_CUCSA5.8e-3993.18Uncharacterized protein OS=Cucumis sativus GN=Csa_2G395190 PE=4 SV=1[more]
A5BQE3_VITVI1.6e-2875.31Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000236 PE=4 SV=1[more]
F6GY82_VITVI7.8e-2872.29Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0075g00150 PE=4 SV=... [more]
A0A0D2SDU6_GOSRA1.1e-2657.55Uncharacterized protein OS=Gossypium raimondii GN=B456_013G139300 PE=4 SV=1[more]
A0A067KRB2_JATCU8.1e-2569.62Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11177 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G35530.22.2e-2156.25 DEAD/DEAH box RNA helicase family protein [more]
Match NameE-valueIdentityDescription
gi|700207934|gb|KGN63053.1|8.3e-3993.18hypothetical protein Csa_2G395190 [Cucumis sativus][more]
gi|778672808|ref|XP_011649875.1|2.0e-3291.25PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus][more]
gi|659081092|ref|XP_008441147.1|2.6e-3290.00PREDICTED: Fanconi anemia group M protein isoform X3 [Cucumis melo][more]
gi|659081094|ref|XP_008441148.1|2.6e-3290.00PREDICTED: Fanconi anemia group M protein isoform X4 [Cucumis melo][more]
gi|659081087|ref|XP_008441145.1|2.6e-3290.00PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004386 helicase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G010050.1Lsi11G010050.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14025FAMILY NOT NAMEDcoord: 76..152
score: 1.5