Lsi11G010050 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTATGACAGAAAAGAGAACATGCACCCAGTGATATTTGATGACTTATGCAGAATGCTGATTGCTGCTTATGTACATTTCATTATTTAAATGATGGAATCAAAATTTGGCAGGCACATGTTTGGTGAAATATCTGGTTTGCTTAGTGATTGATGAAGCCCATCGAGCACTTGGGAATTACTCTTATTGTGTTGCAGTTCGTGAGGTCTGTTGTTCAGTTTGTACTGATTTTCCATTTCTGTTGGATCTTTCACTTTGAGTTTATTACTTTAATTTGCAAGGTTTGTATGCAGTTACCAGTATGATTTTGAATGTACAGTTAATGATGGTACCCGTGCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATGTAAGTTTCTATCAATTTTTTTTTTCCAGATTGTTCAGATTGTTCTATATATTCTAAATCAGTTGCATTTACTCAGCAAAGAAGCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTGATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAATTGATTCAAGTATGCAAACCATGTCTTTAAGTGAATGATGTTCTTTTATTGTAGATTTGATATTGTAGCTGTAAACTTGTAGGTTGCAATGGGAGAAGATGCTGTTGAGATAAATAATGAGCTCTTGGAAGTTATCCGTCCATTTGTGGCTAAACTTTGTTCAATAGGAATTCTCCAAAATAGAGATTATAGAACGGTATGGTACAAATCTTTTGATGCGCATTAG ATGATGTATGACAGAAAAGAGAACATGCACCCAGTGATATTTGATGACTTATGCAGAATGCTGATTGCTGCTTATCCCATCGAGCACTTGGGAATTACTCTTATTGTGTTGCAGTTCGTGAGTTACCAGTATGATTTTGAATGTACAGTTAATGATGGTACCCGTGCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATTTGCATTTACTCAGCAAAGAAGCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTGATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAATTGATTCAAGTTGCAATGGGAGAAGATGCTGTTGAGATAAATAATGAGCTCTTGGAAGTTATCCGTCCATTTGTGGCTAAACTTTGTTCAATAGGAATTCTCCAAAATAGAGATTATAGAACGGTATGGTACAAATCTTTTGATGCGCATTAG ATGATGTATGACAGAAAAGAGAACATGCACCCAGTGATATTTGATGACTTATGCAGAATGCTGATTGCTGCTTATCCCATCGAGCACTTGGGAATTACTCTTATTGTGTTGCAGTTCGTGAGTTACCAGTATGATTTTGAATGTACAGTTAATGATGGTACCCGTGCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATTTGCATTTACTCAGCAAAGAAGCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTGATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAATTGATTCAAGTTGCAATGGGAGAAGATGCTGTTGAGATAAATAATGAGCTCTTGGAAGTTATCCGTCCATTTGTGGCTAAACTTTGTTCAATAGGAATTCTCCAAAATAGAGATTATAGAACGGTATGGTACAAATCTTTTGATGCGCATTAG MMYDRKENMHPVIFDDLCRMLIAAYPIEHLGITLIVLQFVSYQYDFECTVNDGTRATKNTSLNCHTRICIYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDAH
BLAST of Lsi11G010050 vs. Swiss-Prot
Match: FANCM_MOUSE (Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3) HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07 Identity = 28/88 (31.82%), Postives = 46/88 (52.27%), Query Frame = 1
BLAST of Lsi11G010050 vs. Swiss-Prot
Match: FANCM_HUMAN (Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06 Identity = 28/88 (31.82%), Postives = 44/88 (50.00%), Query Frame = 1
BLAST of Lsi11G010050 vs. Swiss-Prot
Match: MPH1_NEUCR (ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mph1 PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 1
BLAST of Lsi11G010050 vs. Swiss-Prot
Match: MPH1_CHAGB (ATP-dependent DNA helicase MPH1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MPH1 PE=3 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 9.2e-06 Identity = 25/73 (34.25%), Postives = 39/73 (53.42%), Query Frame = 1
BLAST of Lsi11G010050 vs. TrEMBL
Match: A0A0A0LMN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G395190 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 5.8e-39 Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1
BLAST of Lsi11G010050 vs. TrEMBL
Match: A5BQE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000236 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28 Identity = 61/81 (75.31%), Postives = 74/81 (91.36%), Query Frame = 1
BLAST of Lsi11G010050 vs. TrEMBL
Match: F6GY82_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0075g00150 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 7.8e-28 Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 1
BLAST of Lsi11G010050 vs. TrEMBL
Match: A0A0D2SDU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G139300 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26 Identity = 61/106 (57.55%), Postives = 83/106 (78.30%), Query Frame = 1
BLAST of Lsi11G010050 vs. TrEMBL
Match: A0A067KRB2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11177 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 8.1e-25 Identity = 55/79 (69.62%), Postives = 72/79 (91.14%), Query Frame = 1
BLAST of Lsi11G010050 vs. TAIR10
Match: AT1G35530.2 (AT1G35530.2 DEAD/DEAH box RNA helicase family protein ) HSP 1 Score: 99.4 bits (246), Expect = 2.2e-21 Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1
BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|700207934|gb|KGN63053.1| (hypothetical protein Csa_2G395190 [Cucumis sativus]) HSP 1 Score: 168.7 bits (426), Expect = 8.3e-39 Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1
BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|778672808|ref|XP_011649875.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus]) HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32 Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 1
BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|659081092|ref|XP_008441147.1| (PREDICTED: Fanconi anemia group M protein isoform X3 [Cucumis melo]) HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32 Identity = 72/80 (90.00%), Postives = 78/80 (97.50%), Query Frame = 1
BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|659081094|ref|XP_008441148.1| (PREDICTED: Fanconi anemia group M protein isoform X4 [Cucumis melo]) HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32 Identity = 72/80 (90.00%), Postives = 78/80 (97.50%), Query Frame = 1
BLAST of Lsi11G010050 vs. NCBI nr
Match: gi|659081087|ref|XP_008441145.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]) HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32 Identity = 72/80 (90.00%), Postives = 78/80 (97.50%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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