Lsi11G005060 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G005060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	TIR-NBS-LRR disease resistance protein
Location	chr11 : 5392323 .. 5393656 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAGTTGGTTTATGAGAAAATTTCCATCATCAACATCAGAATATACATGGTTAGTAATAACTTCTTCTCCAACATTTAGTACTTCCTTGGAGATGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGTTGTGAAATGTCCTGAGGTCACTGTAACTATAAGAAGCTGTGGTGTTCATCTCACTGAAGAGGTCCATGGAATACAAAATGATGTCAAGGGGCCAAGGGTAATTTATACAGATTTTGATCAATCGGACGAATTGTCGAGCTGGTGAGTGAGATTACTGAATGTTTTAACAATGCTTGATTAGTTGTCCTGTTTTACTTTTTGGAACGGCATTATTTTGTCTATTTGAGGATATGATTCATCTAAACTAGTCTCTCTAAAACACGGTTTATCTAAAATCTATTTCTATAGTATATCCATAATTGTTTTGTAATAAGATTTAAGGTTCTTACTATTAAACCATTTCAAACCGAGCATTCGTTAGAGTTTTCGAAATTATTTGTTGTTGTTATTATTTATTCTAAAACTTTATTGCCACTGTTTTGCTCGTAATGTGTTTCTTGTGTATGATGTTCATAATGGCACAGGGATGTTCTCAAATCCCTTGCTCAAGAAGCCTCCGCGACAGATTGGAATGCAGTGTATCATGCAGAAAACTTTCCAGTTGAAATTGATTCCAAAATGCAACAACATATGAATTTTCCCTTACATGTAACTTCTAGGGGTATTTGGTGGCCCGTAATGGGATGGGAATGTAATTTAATGTAATTCAAAATCCAAAATCCATGTTTGGATTGAGCGTTTTGGATCTGATTTGTAATACAAAACTCATTTCGTTTCAATAGTTTTTAATCCAACCCTCTTTCTCATCATTTTCATGCTTCACAATCTCATTTTCGTTCTGTCTTCGATTGTTCATGCTTTTCAACACTTTTTTAATTCTCAGTAATCTTGATTACACTTCAGCTTGAGTACGTGGCATGGAAGGCATAGCAGAGACAAGACTCGCCAAATCTACAATCGACAAAGTTGAAAGTACTTCCTTTGGGAGAAACGAAAGGAAAAACTCCTTCGGGAGAAAGGAGCGGATTTCTTGGTGTCGATGACAATGGATTCCATGGCACATCATCAGCCATTTTAAGGCCAAAAATATCTTAGAATTTTTGACGATGGTGATAGATATGGAGATCTAAATGCAGTGGCTCATGAAACTGATCATATGTTTCCTTAAACAGGGTATAAAAGAAGATGATATTAGAGAAGAGCCTTATTGGAATTACATACAAAAGATGTTAACATTTATGGAAGGGGAATTCTTTTGTTAG

mRNA sequence

CCAAAGTTGGTTTATGAGAAAATTTCCATCATCAACATCAGAATATACATGGTTAGTAATAACTTCTTCTCCAACATTTAGTACTTCCTTGGAGATGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGTTGTGAAATGTCCTGAGGTCACTGTAACTATAAGAAGCTGTGGTGTTCATCTCACTGAAGAGGTCCATGGAATACAAAATGATGTCAAGGGGCCAAGGGTAATTTATACAGATTTTGATCAATCGGACGAATTGTCGAGCTGGGATGTTCTCAAATCCCTTGCTCAAGAAGCCTCCGCGACAGATTGGAATGCAGTGTATCATGCAGAAAACTTTCCAGGTATAAAAGAAGATGATATTAGAGAAGAGCCTTATTGGAATTACATACAAAAGATGTTAACATTTATGGAAGGGGAATTCTTTTGTTAG

Coding sequence (CDS)

ATGAGAAAATTTCCATCATCAACATCAGAATATACATGGTTAGTAATAACTTCTTCTCCAACATTTAGTACTTCCTTGGAGATGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGTTGTGAAATGTCCTGAGGTCACTGTAACTATAAGAAGCTGTGGTGTTCATCTCACTGAAGAGGTCCATGGAATACAAAATGATGTCAAGGGGCCAAGGGTAATTTATACAGATTTTGATCAATCGGACGAATTGTCGAGCTGGGATGTTCTCAAATCCCTTGCTCAAGAAGCCTCCGCGACAGATTGGAATGCAGTGTATCATGCAGAAAACTTTCCAGGTATAAAAGAAGATGATATTAGAGAAGAGCCTTATTGGAATTACATACAAAAGATGTTAACATTTATGGAAGGGGAATTCTTTTGTTAG

Protein sequence

MRKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKCPEVTVTIRSCGVHLTEEVHGIQNDVKGPRVIYTDFDQSDELSSWDVLKSLAQEASATDWNAVYHAENFPGIKEDDIREEPYWNYIQKMLTFMEGEFFC

Homology

[Close]

BLAST of Lsi11G005060 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-43
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 1


Query: 1    MRKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKCPEVTVTIRSCGVHLTEE 60
            MRKFPSSTSEYTWLV TSSPTFSTSLEMN+WN V VWFEVVKC E TVTI+ CGVHLTEE
Sbjct: 1140 MRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEE 1199

Query: 61   VHGIQNDVKGPRVIYTDFDQSDELSSWDVLKSLAQEASA-TDWNAVYHAENFP 113
            VHGIQNDVKGP V+YT FDQ D+L S DV+KS  QE SA +D NA+ HAENFP
Sbjct: 1200 VHGIQNDVKGPGVVYTVFDQLDKLPSRDVIKSFGQEVSAKSDCNAMLHAENFP 1252

[Close]

BLAST of Lsi11G005060 vs. TrEMBL
Match: A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-15
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 2    RKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKC-PEVTVTIRSCGVHLTEE 61
            R F  S SEY WLV TS      S+E+NDWN V+VWFEV +   EV  TI   GVH+TEE
Sbjct: 1044 RPFLPSKSEYMWLVTTSLAL--GSMEVNDWNKVLVWFEVHEAHSEVNATITRYGVHVTEE 1103

Query: 62   VHGIQNDVKGPRVIYTDFDQSDELSSWDV----LKSLAQEASA-TDWNAVYHAENF 112
            +H IQ DVK P V Y DF Q ++L S D+    LK   +E S  ++  A+ +A N+
Sbjct: 1104 LHAIQTDVKWPMVNYADFYQLEKLQSLDIEELLLKRFFEEMSCWSNSQAMLYAANY 1157

[Close]

BLAST of Lsi11G005060 vs. TrEMBL
Match: E7CHD3_CUCSA (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = 1


Query: 6   SSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKC-PEVTVTIRSCGVHLTEEVHGI 65
           SS  EY WLV TS      S+E+NDWN V+VWFEV +   EV  TI   GVH+TEE+H I
Sbjct: 701 SSEREYMWLVTTSLAL--GSMEVNDWNKVLVWFEVHEAHSEVNATITRYGVHVTEELHAI 760

Query: 66  QNDVKGPRVIYTDFDQSDELSSWDV----LKSLAQEASA-TDWNAVYHAENF 112
           Q DVK P V Y DF Q ++L S D+    LK   +E S  ++  A+ +A N+
Sbjct: 761 QTDVKWPMVNYADFYQLEKLQSLDIEELLLKRFFEEMSCWSNSQAMLYAANY 810

[Close]

BLAST of Lsi11G005060 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 54/119 (45.38%), Postives = 69/119 (57.98%), Query Frame = 1


Query: 2    RKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKCP-EVTVTIRSCGVHLTEE 61
            R F  S SEY WL+ TS      S+E+NDWN V+VWFEV +   EV  TI  CGVH+TEE
Sbjct: 1152 RPFLPSKSEYMWLLTTSLAW--GSMEVNDWNKVMVWFEVHEVHGEVNATITRCGVHVTEE 1211

Query: 62   VHGIQNDVKGPRVIYTDFDQSDELSSWDV----LKSLAQEASATDWN----AVYHAENF 112
            +  IQ D K P V Y DF Q ++L S D+    LK   +E S   W+     ++HA N+
Sbjct: 1212 LPAIQTDAKWPMVNYADFYQLEKLQSLDIEHLLLKRFFEEMSC--WSNCKAIMFHAANY 1266

[Close]

BLAST of Lsi11G005060 vs. TrEMBL
Match: D9I8I4_CUCSA (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 47/86 (54.65%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 2    RKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKC-PEVTVTIRSCGVHLTEE 61
            R F  S SEY WLV TS      S+E+NDWN V+VWFEV +   EV  TI   GVH+TEE
Sbjct: 1052 RPFLPSKSEYMWLVTTSLAL--GSMEVNDWNKVLVWFEVHEAHSEVNATITRYGVHVTEE 1111

Query: 62   VHGIQNDVKGPRVIYTDFDQSDELSS 87
            +H IQ DVK P V Y DF Q ++L S
Sbjct: 1112 LHAIQTDVKWPMVNYADFYQLEKLQS 1135

[Close]

BLAST of Lsi11G005060 vs. NCBI nr
Match: gi|659070453|ref|XP_008455171.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 5.8e-44
Identity = 92/113 (81.42%), Postives = 98/113 (86.73%), Query Frame = 1


Query: 1    MRKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKCPEVTVTIRSCGVHLTEE 60
            MRKFPSSTSEYTWLV TSSPTFSTSLEMN+WN V VWFEVVKC EVTVTI+ CGVHLTEE
Sbjct: 1138 MRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEE 1197

Query: 61   VHGIQNDVKGPRVIYTDFDQSDELSSWDVLKSLAQEASA-TDWNAVYHAENFP 113
            VHGIQNDVKGP VIYT FDQ D+L S DV+KS AQE SA +D NA+ HAENFP
Sbjct: 1198 VHGIQNDVKGPGVIYTVFDQPDKLPSRDVVKSFAQEVSAKSDCNAILHAENFP 1250

[Close]

BLAST of Lsi11G005060 vs. NCBI nr
Match: gi|700205747|gb|KGN60866.1| (hypothetical protein Csa_2G020890 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 1


Query: 1    MRKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKCPEVTVTIRSCGVHLTEE 60
            MRKFPSSTSEYTWLV TSSPTFSTSLEMN+WN V VWFEVVKC E TVTI+ CGVHLTEE
Sbjct: 1140 MRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEE 1199

Query: 61   VHGIQNDVKGPRVIYTDFDQSDELSSWDVLKSLAQEASA-TDWNAVYHAENFP 113
            VHGIQNDVKGP V+YT FDQ D+L S DV+KS  QE SA +D NA+ HAENFP
Sbjct: 1200 VHGIQNDVKGPGVVYTVFDQLDKLPSRDVIKSFGQEVSAKSDCNAMLHAENFP 1252

[Close]

BLAST of Lsi11G005060 vs. NCBI nr
Match: gi|778666709|ref|XP_011648797.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 1


Query: 1    MRKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKCPEVTVTIRSCGVHLTEE 60
            MRKFPSSTSEYTWLV TSSPTFSTSLEMN+WN V VWFEVVKC E TVTI+ CGVHLTEE
Sbjct: 1140 MRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEE 1199

Query: 61   VHGIQNDVKGPRVIYTDFDQSDELSSWDVLKSLAQEASA-TDWNAVYHAENFP 113
            VHGIQNDVKGP V+YT FDQ D+L S DV+KS  QE SA +D NA+ HAENFP
Sbjct: 1200 VHGIQNDVKGPGVVYTVFDQLDKLPSRDVIKSFGQEVSAKSDCNAMLHAENFP 1252

[Close]

BLAST of Lsi11G005060 vs. NCBI nr
Match: gi|659070449|ref|XP_008455151.1| (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-17
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 1


Query: 2    RKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKC-PEVTVTIRSCGVHLTEE 61
            R F  S SEY WLV TS      S+E+NDWN V+VWFEV +   EV  TI  CGVH+TEE
Sbjct: 1109 RPFLPSKSEYMWLVTTSLAW--GSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEE 1168

Query: 62   VHGIQNDVKGPRVIYTDFDQSDELSSWDV----LKSLAQEAS--ATDWNAVYHAENF 112
            +HGIQ DVK P V Y DF Q ++L S D+    LKS  +  S  +    A+ HA N+
Sbjct: 1169 LHGIQMDVKWPMVNYADFYQLEKLQSLDIEDLLLKSFLETVSCLSNSKAAMLHAGNY 1223

[Close]

BLAST of Lsi11G005060 vs. NCBI nr
Match: gi|659070451|ref|XP_008455159.1| (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-17
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 1


Query: 2    RKFPSSTSEYTWLVITSSPTFSTSLEMNDWNDVIVWFEVVKC-PEVTVTIRSCGVHLTEE 61
            R F  S SEY WLV TS      S+E+NDWN V+VWFEV +   EV  TI  CGVH+TEE
Sbjct: 922  RPFLPSKSEYMWLVTTSLAW--GSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEE 981

Query: 62   VHGIQNDVKGPRVIYTDFDQSDELSSWDV----LKSLAQEAS--ATDWNAVYHAENF 112
            +HGIQ DVK P V Y DF Q ++L S D+    LKS  +  S  +    A+ HA N+
Sbjct: 982  LHGIQMDVKWPMVNYADFYQLEKLQSLDIEDLLLKSFLETVSCLSNSKAAMLHAGNY 1036

The following BLAST results are available for this feature:

BLAST of Lsi11G005060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G005060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLK3_CUCSA	7.6e-43	78.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1	[more]
A0A0A0LJM0_CUCSA	3.0e-15	47.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1	[more]
E7CHD3_CUCSA	2.5e-14	47.32	Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1	[more]
E5GB33_CUCME	2.5e-14	45.38	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
D9I8I4_CUCSA	1.3e-13	54.65	TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1	[more]

BLAST of Lsi11G005060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi11G005060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070453\|ref\|XP_008455171.1\|	5.8e-44	81.42	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|700205747\|gb\|KGN60866.1\|	1.1e-42	78.76	hypothetical protein Csa_2G020890 [Cucumis sativus]	[more]
gi\|778666709\|ref\|XP_011648797.1\|	1.1e-42	78.76	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|659070449\|ref\|XP_008455151.1\|	6.0e-17	49.57	PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo]	[more]
gi\|659070451\|ref\|XP_008455159.1\|	6.0e-17	49.57	PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016020	membrane
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G005060.1	Lsi11G005060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G005060	MELO3C004310	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G005060	MELO3C004302	Melon (DHL92) v3.5.1	lsimeB118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G005060	Cucumber (Gy14) v1	cgylsiB100
Lsi11G005060	Cucurbita maxima (Rimu)	cmalsiB159
Lsi11G005060	Cucurbita maxima (Rimu)	cmalsiB715
Lsi11G005060	Cucurbita moschata (Rifu)	cmolsiB148
Lsi11G005060	Cucurbita moschata (Rifu)	cmolsiB706
Lsi11G005060	Cucurbita pepo (Zucchini)	cpelsiB074
Lsi11G005060	Cucurbita pepo (Zucchini)	cpelsiB659
Lsi11G005060	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G005060	Cucumber (Chinese Long) v2	culsiB098
Lsi11G005060	Watermelon (Charleston Gray)	lsiwcgB098
Lsi11G005060	Watermelon (97103) v1	lsiwmB107
Lsi11G005060	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G005060	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G005060	Silver-seed gourd	carlsiB654
Lsi11G005060	Cucumber (Chinese Long) v3	cuclsiB108
Lsi11G005060	Watermelon (97103) v2	lsiwmbB087