Lsi11G004910 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G004910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr11 : 5193148 .. 5193403 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGAACAAGAAGACGACAAAAAGGAAAAAGAGGTTCATGGAGCTCAAGAAGTGGAAGAAACACTTGAACATCAGAATCCCATTGAAAATTCCAAACTAGAGTCAAAGGCGAAGAAGAATAACAAAGTTTTGAAGATGAAAAGAAAAATTGTAAAAGAAATCTCCAACTAGTGGTCAAAAGAAGACTAATAAGCTTCAGAGTAGTCCTAAGATGCATATTAAAAAGAAAGTAGAGAATAGTAAGAGTTCGTTGTAG

mRNA sequence

GCTGAACAAGAAGACGACAAAAAGGAAAAAGAGGTTCATGGAGCTCAAGAAGTGGAAGAAACACTTGAACATCAGAATCCCATTGAAAATTCCAAACTAGAGTCAAAGGCGAAGAAGAATAACAAAGTTTTGAAGATGAAAAGAAAAATTAAATCTCCAACTAGTGGTCAAAAGAAGACTAATAAGCTTCAGAGTAGTCCTAAGATGCATATTAAAAAGAAAGTAGAGAATAGTAAGAGTTCGTTGTAG

Coding sequence (CDS)

GCTGAACAAGAAGACGACAAAAAGGAAAAAGAGGTTCATGGAGCTCAAGAAGTGGAAGAAACACTTGAACATCAGAATCCCATTGAAAATTCCAAACTAGAGTCAAAGGCGAAGAAGAATAACAAAGTTTTGAAGATGAAAAGAAAAATTAAATCTCCAACTAGTGGTCAAAAGAAGACTAATAAGCTTCAGAGTAGTCCTAAGATGCATATTAAAAAGAAAGTAGAGAATAGTAAGAGTTCGTTGTAG

Protein sequence

AEQEDDKKEKEVHGAQEVEETLEHQNPIENSKLESKAKKNNKVLKMKRKIKSPTSGQKKTNKLQSSPKMHIKKKVENSKSSL

Homology

[Close]

BLAST of Lsi11G004910 vs. NCBI nr
Match: gi|778730855|ref|XP_011659868.1| (PREDICTED: uncharacterized protein LOC101215107 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-15
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 2   EQEDDKKEKEVHGAQEVEETLEHQNPIENSKLESKAKKNNKVLKMKRKI--KSPTSGQKK 61
           EQED+KKEKEV  AQEVEE+   QNP E+S  ESK K NN+VLK+KRKI  KSP S QKK
Sbjct: 128 EQEDEKKEKEVPVAQEVEESPLTQNPTESSNPESKKKSNNEVLKVKRKIVKKSPASSQKK 187

Query: 62  TNKLQSSPKMHIKKKVENSKSSL 83
           TNKLQ+SPK+ ++KKVENSKSSL
Sbjct: 188 TNKLQNSPKVQVRKKVENSKSSL 210

[Close]

BLAST of Lsi11G004910 vs. NCBI nr
Match: gi|659071592|ref|XP_008460785.1| (PREDICTED: uncharacterized protein LOC103499546 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-14
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 2   EQEDDKKEKEVHGAQEVEETLEHQNPIENSKLESKAKKNNKVLKMKRKI--KSPTSGQKK 61
           EQEDD+K+KEV  AQEVEE++  QNP E+S  ESK KKNN+VLK+KRKI  KSP S QKK
Sbjct: 104 EQEDDRKDKEVPVAQEVEESILTQNPTESSNPESK-KKNNEVLKVKRKIVKKSPASSQKK 163

Query: 62  TNKLQSSPKMHIKKKVENSKSSL 83
           TNKLQ+SPK+ ++KKVENSKS L
Sbjct: 164 TNKLQTSPKVQVRKKVENSKSLL 185

The following BLAST results are available for this feature:

BLAST of Lsi11G004910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G004910 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lsi11G004910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi11G004910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730855\|ref\|XP_011659868.1\|	5.6e-15	71.08	PREDICTED: uncharacterized protein LOC101215107 [Cucumis sativus]	[more]
gi\|659071592\|ref\|XP_008460785.1\|	6.2e-14	69.88	PREDICTED: uncharacterized protein LOC103499546 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G004910.1	Lsi11G004910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G004910	Watermelon (97103) v2	lsiwmbB087
Lsi11G004910	Wax gourd	lsiwgoB108
Lsi11G004910	Cucurbita maxima (Rimu)	cmalsiB159
Lsi11G004910	Cucurbita maxima (Rimu)	cmalsiB715
Lsi11G004910	Cucurbita moschata (Rifu)	cmolsiB148
Lsi11G004910	Cucurbita moschata (Rifu)	cmolsiB706
Lsi11G004910	Cucurbita pepo (Zucchini)	cpelsiB074
Lsi11G004910	Cucurbita pepo (Zucchini)	cpelsiB659
Lsi11G004910	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G004910	Cucumber (Chinese Long) v2	culsiB098
Lsi11G004910	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G004910	Watermelon (Charleston Gray)	lsiwcgB098
Lsi11G004910	Watermelon (97103) v1	lsiwmB107
Lsi11G004910	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G004910	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G004910	Silver-seed gourd	carlsiB271
Lsi11G004910	Silver-seed gourd	carlsiB654
Lsi11G004910	Cucumber (Chinese Long) v3	cuclsiB108