Lsi11G001280 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G001280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Genomic DNA, chromosome 3, P1 clone: MPN9
Location	chr11 : 1443233 .. 1448224 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGAAAAAAAAAAAAAAAAAAGATGTCGTGTGGGTCTACAATTGCAAAGCAAACAAGTGGTTGAAATTAAAGTGAAACGAATAAAATCAATTCGAAACCACATCCTTTCTCAAATTCCATTCTTGATTCTCCGCTCCCGATTCCATTCTCGATCTTCCGATTGTCCTAAAAGGTAATGTTTATGTGCAATTTTTCCCGTTGAAATCAACAGCGATGCTGTACTTCTCTACTTTCAAATTTCAATTGCTCTAATTTGTCTAATCGATGAAACCGTTGATTGTTTTTGCAGATTATGACGAGCGTAACGTTCGGCCACCAGAGTAATTGGTCGCCGGGGATTGGAATTCAAGAACATCTAGGTAGAACTAAGATTTCTAGGGTTTCGTATTCATATTCGGAGTATTGTTGTCCATTTCTTCCTTCTAGAGACACAATCACTCACCATGGGAATCATGTTGCTTACTGTCGCCGGCGAAGTGGACGGCAAGTGAGACCTGTTCTTGCCGGTTCCGTCGACGGTGGCATGGATCCAGATGAGTCCGATCGTGGGATTAACGACAGTGAGAGTCCCAAGCCCGAAAATGGAGGGGTCAGTACTCAACTGCTTTCAATTAACATAGTTTCTATCGCCTTTTTAACTCTAAAACACATCGGTATTAAGAGTCTCTAGACATTTATCCTCAATCCAAGACATTTGAGGTTGGAGTGCTCATTCCCACGTAGGTTGAACTGAAATGGAAAAAGATCAGAATTAGCCGTCAATAGTTTACGTTTTTCAAAACTAACCTTTTTTTTTTTTTAATTTGTTCAAATAATTTTTTTTAGTGTATCCCGACCAACCACTGAGATTTGAATAAAAAGTTAACTTTTTATTATTTTATTAGTTATTTTGGACTTTTTCTTGGGGAATGAATACCAAGATTCTCCTAATTTTTTAAATATTAGGTAAACTTTTTAAATTTTATCCAAATTCTACCTTTTTTTTTTTTTTTGAAAAATTTTCACCGATAGAAAAAATGTCAAACTATTTATAGAAAATAGCAAAAAAAAAAAAAAATACTAATACACATTGATAGACTTCTATCATTTTTATCAGTGATAGACCCAGATAGATTTCTATCAACGTCTAGCACAACTATCTAAAAAAATTTCTATTTTGGGTAAATAGTTTCCTTTATTTTTCTATTTTTAAAAATCCCCCTTCTTTTTTTTTTTCTAAATTTCTTCAAATTCGGTTATCTTTACCAAATTCTATATTAAAATTTTCAAATTTTTTGTCCAATTTTTGTTTTAATTATATGAAATTCTAAATTTCAATATGGATTTACCAACTATCTAAATGGATCATTTTTAAATTTAGGGGAAGATCAAATTTTGCAAAAATATTTGAAAAAATTACTAAACAAAATTTTTCCAAGAAAGCTTGATCTTGGTGTTCATCCTGAGCAATATTGTATCGAAAAAGCCAAAAGAATCAAGAATTTTGGACTTTCTTGGTACAATTTTAAATGGTTTTACCAATTATCTTTAAAAAAAAATTCTGTGTGATTTTTAAATTTGGAAAGATTTGGGAAGATTAAGTAAGATTTGAGAATATTATGTAAATCTCAATCTCATCCTGGCAGAGATTCACCGAGAAAGCCCAAAAGAATCGATAATTTGAATATAAGCTGTAAATGTTAACTTTTTATACAAATCTCGTTGGTCGATCTCAGTCGGGAAGCACCGAAAAAATTTATTTTAACAAATTTTAAAAAAGCGAGCTAGTTTTGAAAAGTGAAACTTAAAAAGGGTTATTTCTCAATGTACTAACCTAAACGTGACTTGGTTATAGTATATATACTCGAACAAAAAGGTCTAAAGTTTAAATTTCGACTCCTTTCTTTACTTAAAAAAATTTATAGATTTTGATTTTAATAATTAATTTTTTGCTGTAAACAGCCGTGCATGTAGTAAGTTGATAAGTGACAAGTGTTTAGCTACTTGAATTATATTGAATTTTTTCCAAGATATTTACACTTTTAGAAACTATTTCAACCGTCAAAATTGATATTGAAAATGAGCGACAAAAATAATTTTAACCATTTTATCATGTCCTTAATTGTGTTACAACAACCATTTATCACTTTCGTTATTGTGAAGCAATAGGTTCGATCAAATGAAATCAAAGTGTTAATCGTCACATCACATGGTAGAAGAAATAGAAATGTTCAACCATCCTGGCATCATTCTTCCTGTGGAGACTCATTTGAGTAAATTTATTATCGTTCTTTCAGATGAACTTTGAAATGCTTAGGGAGAACTTGGAGAGATCGGTTGGGACAGATGATTCCAGATTTAGTGGGATCGACCTGGCTACTCTTATTAGAAACAAGTATGGCAAGTCTTATGATGTTCAACTAATAAAGAAGGTATTCTAACTTCCATTCCTTCCATTAAATTACAAGTATAGTCTTTTAGGTTTATGTGTTAAATAATCTTGGTTATTGAACTTTAAAAGTATCTCACAAGTTCATTAATTGTGTGTTTAATAAGGTCTTAAGCTTTTAACTTTTTGTCGAATAATTCCTGAATTTGTTCGATACGAAATTGTAAGTTTAACGTGTTATTAAGACAATTAATTTAATGTCTAATAATAGATTTCTTAGAATTCAAGGACACAGTAGTACAACCTATAGAACATATCTTACTCGAGTCTAATGAAAGATTCAATAATGTAAAAGAATGTTGAATATGTAAGAGATCTATTAGACTAAATTGAAAGTTCAAGTATCTATTTGAAAATTTTAAAGCTCAAGAACTTATAAACTACAAATTTGAAATTTCAAGAACTTAGATACCTTTGAAAGTTCAGAGACACAATTAATAAATACATATGAAAGTTTAGAAATTAAACTTATAATTTAAGTTTTAACCTAATCACCTAAAAAAGAAGTCGACTTCTTTTCCACCTTTTCTTCCCTGAAATCTTACAATTTTAAAGATGCTATGTTGTACATATTAGACATTTGTTGTGCATTATCATCAAAATTCAAGAAGCCAATTCTCATAAACTATTAACTCAGATTGTATAGTTTCTGAGTTTGTCATATAATCAGTATGGTTTGTGCGTAATTTAAATTAAAAGTCTGTTTGGATTGACTTTTAAGTGTTTATATGTGCATTTTGCACTTATAAACACTTATTTAAACATTTAGAAAGTCAATCCGAACGAACTCTAAATTATAGATTTCTCATCTTGTTTCTGTCATAATTCAGGAGTTCATGGGACGGAATCTTCTAGCTTTAAATGTCATGTGGAAATACAGAGAGCAGGTATGCAAGACCCAGTCTCCACTGCTACTTTTTCACCAAAATCTTTAATCAAAATTAAGGGAATCTGTCAACGAATTATAAAAACTGAGAGGCTGATGAAAGATTAAAAAATGGTATTTTTCTAATTGGAATATTGATTCTAGCCCCTCACCATTGAACCACTCTGAGCAAGTAGGAAATCATAATGGTTGCCCTTTATAAATATTCTTATAATGTTGGTGGCTCCCACATCATTTTTTAAAAGGAGTATCTTGGAACTTCCTTTAGATAATCGTAGCAAATCAGATTTTGGGAGAAAAGGTAAGGGATTTTAATTCTACTAGCTGATGTACAAAATATCTAGGGAGGTTTTGCTCCAAGAATTAAAAACCAAGCACAAGCCCTAGTAAGATCACTAAAAGTTAAGGAGTTGCAGTTAATGAGATTGATAATGAAACCAAAAATGAATTGCAAGTAAATAATTATATATCAAATATATTGCAAGTAAACATATTTAGATGATCTTTTAACCATTAGCTATTGACTGTGCATGAAGGCAAATGAGCACTTCACAGAGCATCAATGCCCTAAAAATTGGGGAGATTATTTGTACATATAAATATTGGATATTTGTCAATTTCGTAGAAATCATTTCCATTGTCCGAGGAAGAGTATCTATTGCGGCTTGATGGTGTGGCTAATACATTAAAATGCTGGGGAGCCGTTGCTCACATTCGAAACAGCTTAGACAAAACTAAGGACAGACCTCGGATAGGAAAGGTAACATTACTGGGAAGTTAGTCCCTTTTTTTCTGTATATCTTTCATTTTTAAGCAGTCTCCACTAGAATTATGAACAAAGGCCGGAGGGCAAGGACGGAGTTGAAGGGGAAAACTTTAGATAGGAAACGGCAACAATGGGTACTAGAGTCTACAATCGATTGACTTAGTTCGATTAGTAGAATTATGATCACTCATTGAGTTAAGGCAACCTAGAAAACTTGATGATCTTTAGCAATGATGAATTAACTTGTCTTGAAGAACCTATGACTTTGAGATTGAATACCTTTGTTAGTTGTATTTTGATAGATTTGTATTTTCTTATGGAATATTATCATTGGTTGCTATTGAAACTTTGCAGGCAGTCAGTATTTTTATCGACATGGACGAGTCTGGTGGTCGTGCCAATGAGTGGATATACAAGTAGATTACTTACACAAACAAAATTCAAATGTATATTTCTTATATATTTTTTTGTATAGGTAAAAATCTAATAAATACACGTTTTATTTATTTAGATAACTCTAGTTCCTCTAGGCTACATTTGTTTTTGGATGATAATGGTGGTTTTGCATAAAGATGTCACAATGATGTCGGTCTTTAACTCACAACGGTAATTAGTATGACCTTCTTCCTTAAAACTTGGAGGATCAATTGTTGTATTAAAAGAAAATGAGGTATTTTTTTTTATCACCGAGTTCAATACATTTTCTTCTTCTTTGATAGGAAACAAGAAGACAACAAAAGACAGTCTAAAAGTCGGGTAGAAAAAGCTCTCCCACACCCAAGAAAACTACTTAACAAGGGTTTTTTCAATTGTTTGAGGTGTATCGAAAAGTCGTGTTATGTATTAAATTACACAAAGGATTAAAATGAAGAAGCTTATATTTAAAAAAAGGGTTAACAACATAAA

mRNA sequence

ATGGAAAAGAAAAAAAAAAAAAAAAAAGATGTCGTGTGGGTCTACAATTGCAAAGCAAACAAGTGGTTGAAATTAAAGTGAAACGAATAAAATCAATTCGAAACCACATCCTTTCTCAAATTCCATTCTTGATTCTCCGCTCCCGATTCCATTCTCGATCTTCCGATTGTCCTAAAAGATTATGACGAGCGTAACGTTCGGCCACCAGAGTAATTGGTCGCCGGGGATTGGAATTCAAGAACATCTAGGTAGAACTAAGATTTCTAGGGTTTCGTATTCATATTCGGAGTATTGTTGTCCATTTCTTCCTTCTAGAGACACAATCACTCACCATGGGAATCATGTTGCTTACTGTCGCCGGCGAAGTGGACGGCAAGTGAGACCTGTTCTTGCCGGTTCCGTCGACGGTGGCATGGATCCAGATGAGTCCGATCGTGGGATTAACGACAGTGAGAGTCCCAAGCCCGAAAATGGAGGGATGAACTTTGAAATGCTTAGGGAGAACTTGGAGAGATCGGTTGGGACAGATGATTCCAGATTTAGTGGGATCGACCTGGCTACTCTTATTAGAAACAAGTATGGCAAGTCTTATGATGTTCAACTAATAAAGAAGAAATCATTTCCATTGTCCGAGGAAGAGTATCTATTGCGGCTTGATGGTGTGGCTAATACATTAAAATGCTGGGGAGCCGTTGCTCACATTCGAAACAGCTTAGACAAAACTAAGGACAGACCTCGGATAGGAAAGGCAGTCAGTATTTTTATCGACATGGACGAGTCTGGTGGTCGTGCCAATGAGTGGATATACAAGTAGATTACTTACACAAACAAAATTCAAATGTATATTTCTTATATATTTTTTTGTATAGGAAACAAGAAGACAACAAAAGACAGTCTAAAAGTCGGGTAGAAAAAGCTCTCCCACACCCAAGAAAACTACTTAACAAGGGTTTTTTCAATTGTTTGAGGTGTATCGAAAAGTCGTGTTATGTATTAAATTACACAAAGGATTAAAATGAAGAAGCTTATATTTAAAAAAAGGGTTAACAACATAAA

Coding sequence (CDS)

ATGACGAGCGTAACGTTCGGCCACCAGAGTAATTGGTCGCCGGGGATTGGAATTCAAGAACATCTAGGTAGAACTAAGATTTCTAGGGTTTCGTATTCATATTCGGAGTATTGTTGTCCATTTCTTCCTTCTAGAGACACAATCACTCACCATGGGAATCATGTTGCTTACTGTCGCCGGCGAAGTGGACGGCAAGTGAGACCTGTTCTTGCCGGTTCCGTCGACGGTGGCATGGATCCAGATGAGTCCGATCGTGGGATTAACGACAGTGAGAGTCCCAAGCCCGAAAATGGAGGGATGAACTTTGAAATGCTTAGGGAGAACTTGGAGAGATCGGTTGGGACAGATGATTCCAGATTTAGTGGGATCGACCTGGCTACTCTTATTAGAAACAAGTATGGCAAGTCTTATGATGTTCAACTAATAAAGAAGAAATCATTTCCATTGTCCGAGGAAGAGTATCTATTGCGGCTTGATGGTGTGGCTAATACATTAAAATGCTGGGGAGCCGTTGCTCACATTCGAAACAGCTTAGACAAAACTAAGGACAGACCTCGGATAGGAAAGGCAGTCAGTATTTTTATCGACATGGACGAGTCTGGTGGTCGTGCCAATGAGTGGATATACAAGTAG

Protein sequence

MTSVTFGHQSNWSPGIGIQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRRRSGRQVRPVLAGSVDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRFSGIDLATLIRNKYGKSYDVQLIKKKSFPLSEEEYLLRLDGVANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK

Homology

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BLAST of Lsi11G001280 vs. TrEMBL
Match: F6HGH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01220 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.2e-62
Identity = 127/229 (55.46%), Postives = 161/229 (70.31%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRR 60
           MT ++  H + W   +GIQ H  R + +++    S    P++PSR +  +HG  +A    
Sbjct: 15  MTMLSGNHCNLW---LGIQNHPSRGRFNQIICPGSG---PYIPSRGSFFYHGQCLAGSSH 74

Query: 61  RSGRQVRPVLAGSVDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRF 120
           +S R+ RP+ + +VD GMDPD+S+ GI+  +    E GG+N EM+RENLER VG+DDS F
Sbjct: 75  QSARRCRPIFSSTVDDGMDPDDSEDGIDKKQPSNGELGGVNSEMIRENLERIVGSDDSTF 134

Query: 121 SGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYLLRLDGV 180
           SG+DLATLIRNKYG+SYDV LIKK                   +SFPL+EEEYLLRLD V
Sbjct: 135 SGLDLATLIRNKYGRSYDVLLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYLLRLDDV 194

Query: 181 ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           ANTLKCWGA++HIRNSL+K K+RPRIGKAVSIFIDMDESGGR+NEWIYK
Sbjct: 195 ANTLKCWGAISHIRNSLEKLKERPRIGKAVSIFIDMDESGGRSNEWIYK 237

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BLAST of Lsi11G001280 vs. TrEMBL
Match: A0A0A0KPN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289650 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.7e-62
Identity = 122/145 (84.14%), Postives = 127/145 (87.59%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRR 60
           MTSVTFGHQSNWSPGIGIQEHLGRTKISRV       CCPFLPS    THHGNHVAYCRR
Sbjct: 32  MTSVTFGHQSNWSPGIGIQEHLGRTKISRVD------CCPFLPS----THHGNHVAYCRR 91

Query: 61  RSGRQVRPVLAGSVDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRF 120
           R+GRQ+RPV AGS+DG MDPD+ D  INDSESPK EN GMNFEMLRENLERSVGTDDSRF
Sbjct: 92  RTGRQLRPVFAGSIDGAMDPDDPDHRINDSESPKTENEGMNFEMLRENLERSVGTDDSRF 151

Query: 121 SGIDLATLIRNKYGKSYDVQLIKKK 146
           SGIDLATLIRNKYGKSYDVQLIKK+
Sbjct: 152 SGIDLATLIRNKYGKSYDVQLIKKE 166

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BLAST of Lsi11G001280 vs. TrEMBL
Match: M5XQM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008523mg PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 136/235 (57.87%), Postives = 161/235 (68.51%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHL----GRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVA 60
           MTS+   H  NWS   G+QE+L    G  K+    Y+ S     + PSR  +     +  
Sbjct: 3   MTSIISSHHCNWS--FGVQENLNTGMGFNKVVLPGYNGS-----YFPSRGGLVFSTGN-C 62

Query: 61  YCRRRSGRQVRPVLAGSVDGGMDPDESDRGINDSE--SPKPENGGMNFEMLRENLERSVG 120
           + R  S R+ RP+ + + D G++PD+S+   ND++  SPKPE GG+N EMLRENLER VG
Sbjct: 63  HIRYHSDRRHRPIFSSTTDDGINPDDSEDP-NDAKDSSPKPETGGVNSEMLRENLERLVG 122

Query: 121 TDDSRFSGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYL 180
           TDDS FSGIDLATLIRNKYG+SYDVQLIKK                   +SFPL+EEEYL
Sbjct: 123 TDDSSFSGIDLATLIRNKYGRSYDVQLIKKEFLGRNLLALNVMWKYMEQRSFPLTEEEYL 182

Query: 181 LRLDGVANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           LRLD VANTLKCWGAV+HIRNSL K K+RPRIGKAVSIFIDMDESGGRANEWIYK
Sbjct: 183 LRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 228

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BLAST of Lsi11G001280 vs. TrEMBL
Match: M5XED6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008523mg PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 136/235 (57.87%), Postives = 161/235 (68.51%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHL----GRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVA 60
           MTS+   H  NWS   G+QE+L    G  K+    Y+ S     + PSR  +     +  
Sbjct: 98  MTSIISSHHCNWS--FGVQENLNTGMGFNKVVLPGYNGS-----YFPSRGGLVFSTGN-C 157

Query: 61  YCRRRSGRQVRPVLAGSVDGGMDPDESDRGINDSE--SPKPENGGMNFEMLRENLERSVG 120
           + R  S R+ RP+ + + D G++PD+S+   ND++  SPKPE GG+N EMLRENLER VG
Sbjct: 158 HIRYHSDRRHRPIFSSTTDDGINPDDSEDP-NDAKDSSPKPETGGVNSEMLRENLERLVG 217

Query: 121 TDDSRFSGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYL 180
           TDDS FSGIDLATLIRNKYG+SYDVQLIKK                   +SFPL+EEEYL
Sbjct: 218 TDDSSFSGIDLATLIRNKYGRSYDVQLIKKEFLGRNLLALNVMWKYMEQRSFPLTEEEYL 277

Query: 181 LRLDGVANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           LRLD VANTLKCWGAV+HIRNSL K K+RPRIGKAVSIFIDMDESGGRANEWIYK
Sbjct: 278 LRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 323

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BLAST of Lsi11G001280 vs. TrEMBL
Match: M5XCI7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008523mg PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 136/235 (57.87%), Postives = 161/235 (68.51%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHL----GRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVA 60
           MTS+   H  NWS   G+QE+L    G  K+    Y+ S     + PSR  +     +  
Sbjct: 103 MTSIISSHHCNWS--FGVQENLNTGMGFNKVVLPGYNGS-----YFPSRGGLVFSTGN-C 162

Query: 61  YCRRRSGRQVRPVLAGSVDGGMDPDESDRGINDSE--SPKPENGGMNFEMLRENLERSVG 120
           + R  S R+ RP+ + + D G++PD+S+   ND++  SPKPE GG+N EMLRENLER VG
Sbjct: 163 HIRYHSDRRHRPIFSSTTDDGINPDDSEDP-NDAKDSSPKPETGGVNSEMLRENLERLVG 222

Query: 121 TDDSRFSGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYL 180
           TDDS FSGIDLATLIRNKYG+SYDVQLIKK                   +SFPL+EEEYL
Sbjct: 223 TDDSSFSGIDLATLIRNKYGRSYDVQLIKKEFLGRNLLALNVMWKYMEQRSFPLTEEEYL 282

Query: 181 LRLDGVANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           LRLD VANTLKCWGAV+HIRNSL K K+RPRIGKAVSIFIDMDESGGRANEWIYK
Sbjct: 283 LRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 328

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BLAST of Lsi11G001280 vs. TAIR10
Match: AT3G19900.1 (AT3G19900.1 unknown protein)

HSP 1 Score: 180.6 bits (457), Expect = 9.7e-46
Identity = 109/216 (50.46%), Postives = 132/216 (61.11%), Query Frame = 1


Query: 18  IQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRR----RSGRQVRPVLAGS 77
           I E  G   IS+VS S   YC P    R   +H     + C +    ++ R+    +   
Sbjct: 16  IHERSGIGTISKVSCS--RYCGPCFSGRLAFSH-----SLCLKTTYGKTDRRKFSRICSI 75

Query: 78  VDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRFSGIDLATLIRNKY 137
           VD   + D SD    +S   K +      +M R NLER VG+DDS F+G+DLATLIR KY
Sbjct: 76  VDDEGNLDNSDDEEKESLDDKTKRQAN--DMNRANLERMVGSDDSAFNGLDLATLIRQKY 135

Query: 138 GKSYDVQLIKK-------------------KSFPLSEEEYLLRLDGVANTLKCWGAVAHI 197
           GKSYDVQLIKK                   +SFPL+EEEY+LRLD VAN LKCWGAV+HI
Sbjct: 136 GKSYDVQLIKKEFMGKNLLAMNVMWKYREQRSFPLTEEEYILRLDDVANMLKCWGAVSHI 195

Query: 198 RNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           R+SL K+K+RPRIGKAVSIFIDMD +GGRANEWIYK
Sbjct: 196 RSSLAKSKERPRIGKAVSIFIDMDSTGGRANEWIYK 222

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BLAST of Lsi11G001280 vs. NCBI nr
Match: gi|659113943|ref|XP_008456834.1| (PREDICTED: uncharacterized protein LOC103496669 [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 5.8e-101
Identity = 190/229 (82.97%), Postives = 194/229 (84.72%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRR 60
           MTSVTFGHQSNWSPGIGIQEH GRTKISRV       CCPFLPS    THHGNHVAYCRR
Sbjct: 1   MTSVTFGHQSNWSPGIGIQEHRGRTKISRVD------CCPFLPS----THHGNHVAYCRR 60

Query: 61  RSGRQVRPVLAGSVDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRF 120
           R+GRQ+RPVLAGS+DG MDPD+ DR INDSESPK ENGGMNFEMLRENLERSVGTDDSRF
Sbjct: 61  RTGRQLRPVLAGSIDGAMDPDDPDRRINDSESPKTENGGMNFEMLRENLERSVGTDDSRF 120

Query: 121 SGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYLLRLDGV 180
           SGIDLATLIRNKYGKSYDVQLIKK                   KSFPLSEEEYLLRLDGV
Sbjct: 121 SGIDLATLIRNKYGKSYDVQLIKKEFMGRNLLALNVMWKYREQKSFPLSEEEYLLRLDGV 180

Query: 181 ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK
Sbjct: 181 ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 219

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BLAST of Lsi11G001280 vs. NCBI nr
Match: gi|449445336|ref|XP_004140429.1| (PREDICTED: uncharacterized protein LOC101207332 [Cucumis sativus])

HSP 1 Score: 371.3 bits (952), Expect = 1.1e-99
Identity = 188/229 (82.10%), Postives = 192/229 (83.84%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRR 60
           MTSVTFGHQSNWSPGIGIQEHLGRTKISRV       CCPFLPS    THHGNHVAYCRR
Sbjct: 32  MTSVTFGHQSNWSPGIGIQEHLGRTKISRVD------CCPFLPS----THHGNHVAYCRR 91

Query: 61  RSGRQVRPVLAGSVDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRF 120
           R+GRQ+RPV AGS+DG MDPD+ D  INDSESPK EN GMNFEMLRENLERSVGTDDSRF
Sbjct: 92  RTGRQLRPVFAGSIDGAMDPDDPDHRINDSESPKTENEGMNFEMLRENLERSVGTDDSRF 151

Query: 121 SGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYLLRLDGV 180
           SGIDLATLIRNKYGKSYDVQLIKK                   KSFPLSEEEYLLRLDGV
Sbjct: 152 SGIDLATLIRNKYGKSYDVQLIKKEFMGRNLLALNVMWKYREQKSFPLSEEEYLLRLDGV 211

Query: 181 ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK
Sbjct: 212 ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 250

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BLAST of Lsi11G001280 vs. NCBI nr
Match: gi|225425067|ref|XP_002271912.1| (PREDICTED: uncharacterized protein LOC100247903 isoform X3 [Vitis vinifera])

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-62
Identity = 127/229 (55.46%), Postives = 161/229 (70.31%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRR 60
           MT ++  H + W   +GIQ H  R + +++    S    P++PSR +  +HG  +A    
Sbjct: 1   MTMLSGNHCNLW---LGIQNHPSRGRFNQIICPGSG---PYIPSRGSFFYHGQCLAGSSH 60

Query: 61  RSGRQVRPVLAGSVDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRF 120
           +S R+ RP+ + +VD GMDPD+S+ GI+  +    E GG+N EM+RENLER VG+DDS F
Sbjct: 61  QSARRCRPIFSSTVDDGMDPDDSEDGIDKKQPSNGELGGVNSEMIRENLERIVGSDDSTF 120

Query: 121 SGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYLLRLDGV 180
           SG+DLATLIRNKYG+SYDV LIKK                   +SFPL+EEEYLLRLD V
Sbjct: 121 SGLDLATLIRNKYGRSYDVLLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYLLRLDDV 180

Query: 181 ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           ANTLKCWGA++HIRNSL+K K+RPRIGKAVSIFIDMDESGGR+NEWIYK
Sbjct: 181 ANTLKCWGAISHIRNSLEKLKERPRIGKAVSIFIDMDESGGRSNEWIYK 223

[Close]

BLAST of Lsi11G001280 vs. NCBI nr
Match: gi|731375318|ref|XP_010654420.1| (PREDICTED: uncharacterized protein LOC100247903 isoform X1 [Vitis vinifera])

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-62
Identity = 127/229 (55.46%), Postives = 161/229 (70.31%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRR 60
           MT ++  H + W   +GIQ H  R + +++    S    P++PSR +  +HG  +A    
Sbjct: 92  MTMLSGNHCNLW---LGIQNHPSRGRFNQIICPGSG---PYIPSRGSFFYHGQCLAGSSH 151

Query: 61  RSGRQVRPVLAGSVDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRF 120
           +S R+ RP+ + +VD GMDPD+S+ GI+  +    E GG+N EM+RENLER VG+DDS F
Sbjct: 152 QSARRCRPIFSSTVDDGMDPDDSEDGIDKKQPSNGELGGVNSEMIRENLERIVGSDDSTF 211

Query: 121 SGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYLLRLDGV 180
           SG+DLATLIRNKYG+SYDV LIKK                   +SFPL+EEEYLLRLD V
Sbjct: 212 SGLDLATLIRNKYGRSYDVLLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYLLRLDDV 271

Query: 181 ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           ANTLKCWGA++HIRNSL+K K+RPRIGKAVSIFIDMDESGGR+NEWIYK
Sbjct: 272 ANTLKCWGAISHIRNSLEKLKERPRIGKAVSIFIDMDESGGRSNEWIYK 314

[Close]

BLAST of Lsi11G001280 vs. NCBI nr
Match: gi|297738248|emb|CBI27449.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-62
Identity = 127/229 (55.46%), Postives = 161/229 (70.31%), Query Frame = 1


Query: 1   MTSVTFGHQSNWSPGIGIQEHLGRTKISRVSYSYSEYCCPFLPSRDTITHHGNHVAYCRR 60
           MT ++  H + W   +GIQ H  R + +++    S    P++PSR +  +HG  +A    
Sbjct: 43  MTMLSGNHCNLW---LGIQNHPSRGRFNQIICPGSG---PYIPSRGSFFYHGQCLAGSSH 102

Query: 61  RSGRQVRPVLAGSVDGGMDPDESDRGINDSESPKPENGGMNFEMLRENLERSVGTDDSRF 120
           +S R+ RP+ + +VD GMDPD+S+ GI+  +    E GG+N EM+RENLER VG+DDS F
Sbjct: 103 QSARRCRPIFSSTVDDGMDPDDSEDGIDKKQPSNGELGGVNSEMIRENLERIVGSDDSTF 162

Query: 121 SGIDLATLIRNKYGKSYDVQLIKK-------------------KSFPLSEEEYLLRLDGV 180
           SG+DLATLIRNKYG+SYDV LIKK                   +SFPL+EEEYLLRLD V
Sbjct: 163 SGLDLATLIRNKYGRSYDVLLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYLLRLDDV 222

Query: 181 ANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 211
           ANTLKCWGA++HIRNSL+K K+RPRIGKAVSIFIDMDESGGR+NEWIYK
Sbjct: 223 ANTLKCWGAISHIRNSLEKLKERPRIGKAVSIFIDMDESGGRSNEWIYK 265

The following BLAST results are available for this feature:

BLAST of Lsi11G001280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G001280 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HGH7_VITVI	2.2e-62	55.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01220 PE=4 SV=...	[more]
A0A0A0KPN5_CUCSA	3.7e-62	84.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289650 PE=4 SV=1	[more]
M5XQM2_PRUPE	1.2e-60	57.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008523mg PE=4 SV=1	[more]
M5XED6_PRUPE	1.2e-60	57.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008523mg PE=4 SV=1	[more]
M5XCI7_PRUPE	1.2e-60	57.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008523mg PE=4 SV=1	[more]

BLAST of Lsi11G001280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19900.1	9.7e-46	50.46	unknown protein	[more]

BLAST of Lsi11G001280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113943\|ref\|XP_008456834.1\|	5.8e-101	82.97	PREDICTED: uncharacterized protein LOC103496669 [Cucumis melo]	[more]
gi\|449445336\|ref\|XP_004140429.1\|	1.1e-99	82.10	PREDICTED: uncharacterized protein LOC101207332 [Cucumis sativus]	[more]
gi\|225425067\|ref\|XP_002271912.1\|	3.1e-62	55.46	PREDICTED: uncharacterized protein LOC100247903 isoform X3 [Vitis vinifera]	[more]
gi\|731375318\|ref\|XP_010654420.1\|	3.1e-62	55.46	PREDICTED: uncharacterized protein LOC100247903 isoform X1 [Vitis vinifera]	[more]
gi\|297738248\|emb\|CBI27449.3\|	3.1e-62	55.46	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021420	DUF3067

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001280.1	Lsi11G001280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021420	Domain of unknown function DUF3067	PFAM	PF11267	DUF3067	coord: 143..208 score: 9.5
None	No IPR available	PANTHER	PTHR35126	FAMILY NOT NAMED	coord: 55..210 score: 2.4
None	No IPR available	PANTHER	PTHR35126:SF1	SUBFAMILY NOT NAMED	coord: 55..210 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G001280	Csa5G289650	Cucumber (Chinese Long) v2	culsiB339
Lsi11G001280	CSPI05G12550	Wild cucumber (PI 183967)	cpilsiB342
Lsi11G001280	Cucsa.373360	Cucumber (Gy14) v1	cgylsiB604
Lsi11G001280	Cla016885	Watermelon (97103) v1	lsiwmB116
Lsi11G001280	MELO3C020030	Melon (DHL92) v3.5.1	lsimeB080
Lsi11G001280	ClCG11G001160	Watermelon (Charleston Gray)	lsiwcgB078
Lsi11G001280	MELO3C020030.2	Melon (DHL92) v3.6.1	lsimedB089
Lsi11G001280	Cla97C11G207560	Watermelon (97103) v2	lsiwmbB074
Lsi11G001280	Bhi07G000124	Wax gourd	lsiwgoB136
Lsi11G001280	CsGy5G009960	Cucumber (Gy14) v2	cgyblsiB307
Lsi11G001280	CsaV3_5G013210	Cucumber (Chinese Long) v3	cuclsiB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G001280	Cucurbita maxima (Rimu)	cmalsiB635
Lsi11G001280	Cucurbita moschata (Rifu)	cmolsiB623