Lsi11G001240 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGTCAAAAAGGAAAAATGGTGAGACGCTGATTGAAGAAAAAGGCGACAGGATTCCATTGATACCATTCGGAAGAAGCTTGAATTTCGTAGTTCAGCGCCGACTTTGAAGCTTTCATCTATGAAGTTTCGGATTGAAGGAGAAATTCTCAAATTCTGGTGCATATTTTCAGTATGATTGATGGTTCCAGGCATCATAATGCAGCAGCAGCAGCAGCAATCCTCTTCTGCAGTTTCGCCTCACCATATCACTCCTCCGCCTTCCTCTCTTAGGTCACCTTCATCCACACCTCCCGCCGCCCACTCGCCACTGCCTCTCTCTCCTCTCACGACCCACGTCTCCAATTCCCACCGGGAGCCGCTGCCTCCTCCGCCATCCGACCATGTTGCCGGACCACTGCTGCAATCCGCCGGTGATTCTGCTGTAGCTATGGCTTGTCCACTGGCCAGGGTCCGCCTGTCTGATATTGCCCCTTACGACGGCGCGCCTGGGGGGTCCTACGTGAGGGCGGTTGAGGCTTTGTCCGGATCCTTGACGAGGTATAATGCGGTTGTGATTGAATTGGAGAATGAAGCTGCTGCTCTCACTCGTTGCGGTCTTGAAGCGGCTAGGTTGTTTTTCAAGAGCAGGGCGCAGAGTGGTGGAAAGGGGCGAGGTGTTTATATGTATAGAGCTGGAAGGTGGTTAGCTTATTATACTCTCTCTTTTCTATATTAATTGTTTAGTTCTCATTTATAAGCCAGTTATATCTCGATACTTCCTGAGATCTACCTTCAAGGTACTGTTTGTGGAACCAGGAAAATATTCATGCTGATTTATGCAGTTTTACATGAGCTCAAATAGAATTTTCTACTGTAATTAAAGGGAAAAATCATAACAAAGTGACTAGCTGGTTTTGGCTTCCATCAGCTGGATTCTAGCTTCAGATTAATTTGAACAAAGAAAATTCAATTTTGTTACCTCTCCCTTAAGTTGCACCCTTTTCGTAGAGTGCAATTGGCAAATTGTCCTAGCCGAATATTAATGATAGGCTTCAAAAAAGAAGCCCTTTCCACGCTTTATCTCCAAGTTGGTATGTGATATGCTATGCGAAAGATTAGTCTCACTCACTTATTCCTATCATACTCCTTTGCCTACAATGACTCGTCCATCTTGTAAAAAGTATCCAATGCATACGTGCCGCTGTGCATTCACATAACTTTTATTCTTTGAGTTTTTGGTTTGAGAGAAACAACCCTATCTTCAAGATTTAGGGGAGGTAAGAATATTTGCATCAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGCATCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCTTTCTGGAAAGAAAGAATTAAATGGGCAAGGAAAATTCTAACAATTTGAAGCAGGCATTGAAGAATTTTGGAAAACACCCTTGAAACGTTAAATATAGAAAGCAACTTGAAGCAGCATCTTGAAGAGTATGAGCTGCCAAAGATTTTGCATATGATTAATGTGATGAAGGTCTTCTCCATTTGCATAACATATAGGGCAAACTGAAGGCATAAGAAAGAGGGGAGTTTCCTTTGAAGAACCTCTGAAGTATAAATGCTGCCAAATAACATAATCCAGATGAGAACTTAGGTCCTCTTGAGACTTTTAGATTTTCATATAACCTTATAACTCTCGTTATTTAATGGAGAAGAAGATGCTGCCAACTGTCTTGATAGAATTTACAGTAAACATGCCTGAAGAATCCGAAATCCATTTTCTTGAGTCTTCGAGTGAACCAATCTTAGAAGTAGAAAGAATTCCCGGCAAATATTGCAATGCAATTATATCATCATCTTTTAATAACCTTCTTAAAAAAATCATGACATGTGGAGCATCTAAGATTCTCAGTAATCTGGAACCAATCCATTAGGTGAGGAAGAGATGACAAAAAGTTGAGGAAAGCCTAAGCTTTAAGGTAGAATCACCAATCCAAGTATCTTGCCAAAATAGATTTCTTTGCCATTTTCCCACTTAAATGGGCAAATGATTCCATGCACCCAAGAATACGAGAGCTTTGGTGATTTTGCGTTGTTAGTTTTTTGGGTTTCTTGTGTTGCAAGTTGTGTGATGGAGGCCTCTTGCTTTTGTGATAGATTGTTGTCGGTTATTCATATGCATGTTTATTTTTGTTACAGAGCGGTGGAAGATTGGGACTCTTGCCCTCCATGTATGGCTGATATTTTTAGATGCATGGGTAAAGCAGCTCGGGCTGCCTTATGCGCAATAGCTAGGCATCTTCGTTTGAGAAGCGAGTAAGAATGCTGTGGACATTCATTTTTACTTTTGGTTAGCTATGTTGGACTTATGTACCTATATATACAAACAAATCAATACTTTGCAGTGTTTTCAATAATTTGCTCGATGACACTCCACTTCCTGCTACTGATGTATCCTCATCAGTGCTTGTTGCAATGCACTTGCATAATAGCTCTTTGCACAATTGCAAGGGTTCTATTGGAGGAGGAAAGTCAGCAATGAATGTTGAAGTTGAGAAGGGGTTATTGACATTGTTTTCCTCAGACAATCCTGGTTTACAGGTGTACTTCAATGACCTTGATAACTGATCTTCTTTAGATATTGACATTCAAATTTAATGTCTAACATTGTTAATTTAGTGCATTAAAGCTTTACATGTACTATCTGTAGCCTTCTTAAGGACATATACGTTATTTTTCTCATTGGCAGGTTTGTGATCCCAATGGTCGCTGGTACCTAGCAGATGCTGTGGTGGCACCTGGTGATCTGCTACTGATTACTGGCAAGGCACTTAGCCATGCTACAGCTGGCCTTCGGCCTGCTGCATCATATAGAGCTGCTCCTGATCATTCCTTGGGCTCAAATTGTGTTGGGAGGTATATAATTTCGTATAAATTCATATATTTATATTTTTCATTTTGTAGTATAATCTACGCTGTATGATCAAACCCTTTTAATTGTTGCTTGGATTGAATTACTTTGTTCAGCGTTGTGGTTGTAGGACTTCCCTTGCATTTAGACTCATGCCCCAGACCAATGCCATATTAGACTGCTCTCCAGTTGCAGCAGTTGGTCATGTCATTCCCCAAAGATATGGTCCAGTCTCTGTAAGCCAATTCATGGATGATCTTTCTGCTGAGGAAGATGTATTATGCACTCATCTGGACAAGGATCACAATTGTGTAAGTCTTATGATCTTTTTTTTGTAGGAGCACTGTTAAAACTTGGATTTCTTGTCATGACAAGCCATGGATAAGATTCATAGCATGAAAAGCTTCGGTGCAAATTTTAACACTGTTTTCCTTTCTTTTTCTTTTTTTCTTTACTGATATTGAATTCACTCAATTGATTATTTCCTCTATTTGGTATTGTTTTGTGTGTGCTTTTGTTTTACCTCTGTTTTTGTTTCTCTCTACAATTTATTATGAGTTGGAAACCTATTATATAGATTCGCATCATACTCTTGTCCTCCACTTTTGTTGGGAGTTGGTTAAAAATTTAAAAGTTTGTGGGTAGGCGGAATGTGGGGTGGGTTGGGTCGGGCGACGCTCT ATTTGTCAAAAAGGAAAAATGGTGAGACGCTGATTGAAGAAAAAGGCGACAGGATTCCATTGATACCATTCGGAAGAAGCTTGAATTTCGTAGTTCAGCGCCGACTTTGAAGCTTTCATCTATGAAGTTTCGGATTGAAGGAGAAATTCTCAAATTCTGGTGCATATTTTCAGTATGATTGATGGTTCCAGGCATCATAATGCAGCAGCAGCAGCAGCAATCCTCTTCTGCAGTTTCGCCTCACCATATCACTCCTCCGCCTTCCTCTCTTAGGTCACCTTCATCCACACCTCCCGCCGCCCACTCGCCACTGCCTCTCTCTCCTCTCACGACCCACGTCTCCAATTCCCACCGGGAGCCGCTGCCTCCTCCGCCATCCGACCATGTTGCCGGACCACTGCTGCAATCCGCCGGTGATTCTGCTGTAGCTATGGCTTGTCCACTGGCCAGGGTCCGCCTGTCTGATATTGCCCCTTACGACGGCGCGCCTGGGGGGTCCTACGTGAGGGCGGTTGAGGCTTTGTCCGGATCCTTGACGAGGTATAATGCGGTTGTGATTGAATTGGAGAATGAAGCTGCTGCTCTCACTCGTTGCGGTCTTGAAGCGGCTAGGTTGTTTTTCAAGAGCAGGGCGCAGAGTGGTGGAAAGGGGCGAGGTGTTTATATGTATAGAGCTGGAAGAGCGGTGGAAGATTGGGACTCTTGCCCTCCATGTATGGCTGATATTTTTAGATGCATGGGTAAAGCAGCTCGGGCTGCCTTATGCGCAATAGCTAGGCATCTTCGTTTGAGAAGCGATGTTTTCAATAATTTGCTCGATGACACTCCACTTCCTGCTACTGATGTATCCTCATCAGTGCTTGTTGCAATGCACTTGCATAATAGCTCTTTGCACAATTGCAAGGGTTCTATTGGAGGAGGAAAGTCAGCAATGAATGTTGAAGTTGAGAAGGGGTTATTGACATTGTTTTCCTCAGACAATCCTGGTTTACAGGTTTGTGATCCCAATGGTCGCTGGTACCTAGCAGATGCTGTGGTGGCACCTGGTGATCTGCTACTGATTACTGGCAAGGCACTTAGCCATGCTACAGCTGGCCTTCGGCCTGCTGCATCATATAGAGCTGCTCCTGATCATTCCTTGGGCTCAAATTGTGTTGGGAGTATAATCTACGCTCGTTGTGGTTGTAGGACTTCCCTTGCATTTAGACTCATGCCCCAGACCAATGCCATATTAGACTGCTCTCCAGTTGCAGCAGTTGGTCATGTCATTCCCCAAAGATATGGTCCAGTCTCTGTAAGCCAATTCATGGATGATCTTTCTGCTGAGGAAGATGTATTATGCACTCATCTGGACAAGGATCACAATTGTGCGGAATGTGGGGTGGGTTGGGTCGGGCGACGCTCT ATGGTTCCAGGCATCATAATGCAGCAGCAGCAGCAGCAATCCTCTTCTGCAGTTTCGCCTCACCATATCACTCCTCCGCCTTCCTCTCTTAGGTCACCTTCATCCACACCTCCCGCCGCCCACTCGCCACTGCCTCTCTCTCCTCTCACGACCCACGTCTCCAATTCCCACCGGGAGCCGCTGCCTCCTCCGCCATCCGACCATGTTGCCGGACCACTGCTGCAATCCGCCGGTGATTCTGCTGTAGCTATGGCTTGTCCACTGGCCAGGGTCCGCCTGTCTGATATTGCCCCTTACGACGGCGCGCCTGGGGGGTCCTACGTGAGGGCGGTTGAGGCTTTGTCCGGATCCTTGACGAGGTATAATGCGGTTGTGATTGAATTGGAGAATGAAGCTGCTGCTCTCACTCGTTGCGGTCTTGAAGCGGCTAGGTTGTTTTTCAAGAGCAGGGCGCAGAGTGGTGGAAAGGGGCGAGGTGTTTATATGTATAGAGCTGGAAGAGCGGTGGAAGATTGGGACTCTTGCCCTCCATGTATGGCTGATATTTTTAGATGCATGGGTAAAGCAGCTCGGGCTGCCTTATGCGCAATAGCTAGGCATCTTCGTTTGAGAAGCGATGTTTTCAATAATTTGCTCGATGACACTCCACTTCCTGCTACTGATGTATCCTCATCAGTGCTTGTTGCAATGCACTTGCATAATAGCTCTTTGCACAATTGCAAGGGTTCTATTGGAGGAGGAAAGTCAGCAATGAATGTTGAAGTTGAGAAGGGGTTATTGACATTGTTTTCCTCAGACAATCCTGGTTTACAGGTTTGTGATCCCAATGGTCGCTGGTACCTAGCAGATGCTGTGGTGGCACCTGGTGATCTGCTACTGATTACTGGCAAGGCACTTAGCCATGCTACAGCTGGCCTTCGGCCTGCTGCATCATATAGAGCTGCTCCTGATCATTCCTTGGGCTCAAATTGTGTTGGGAGTATAATCTACGCTCGTTGTGGTTGTAGGACTTCCCTTGCATTTAGACTCATGCCCCAGACCAATGCCATATTAGACTGCTCTCCAGTTGCAGCAGTTGGTCATGTCATTCCCCAAAGATATGGTCCAGTCTCTGTAAGCCAATTCATGGATGATCTTTCTGCTGAGGAAGATGTATTATGCACTCATCTGGACAAGGATCACAATTGTGCGGAATGTGGGGTGGGTTGGGTCGGGCGACGCTCT MVPGIIMQQQQQQSSSAVSPHHITPPPSSLRSPSSTPPAAHSPLPLSPLTTHVSNSHREPLPPPPSDHVAGPLLQSAGDSAVAMACPLARVRLSDIAPYDGAPGGSYVRAVEALSGSLTRYNAVVIELENEAAALTRCGLEAARLFFKSRAQSGGKGRGVYMYRAGRAVEDWDSCPPCMADIFRCMGKAARAALCAIARHLRLRSDVFNNLLDDTPLPATDVSSSVLVAMHLHNSSLHNCKGSIGGGKSAMNVEVEKGLLTLFSSDNPGLQVCDPNGRWYLADAVVAPGDLLLITGKALSHATAGLRPAASYRAAPDHSLGSNCVGSIIYARCGCRTSLAFRLMPQTNAILDCSPVAAVGHVIPQRYGPVSVSQFMDDLSAEEDVLCTHLDKDHNCAECGVGWVGRRS
BLAST of Lsi11G001240 vs. TrEMBL
Match: B9HI63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08530g PE=4 SV=2) HSP 1 Score: 480.3 bits (1235), Expect = 2.3e-132 Identity = 271/386 (70.21%), Postives = 302/386 (78.24%), Query Frame = 1
BLAST of Lsi11G001240 vs. TrEMBL
Match: M5XF85_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003811mg PE=4 SV=1) HSP 1 Score: 478.4 bits (1230), Expect = 8.7e-132 Identity = 265/395 (67.09%), Postives = 301/395 (76.20%), Query Frame = 1
BLAST of Lsi11G001240 vs. TrEMBL
Match: B9HY26_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s17820g PE=4 SV=2) HSP 1 Score: 468.8 bits (1205), Expect = 6.9e-129 Identity = 267/396 (67.42%), Postives = 303/396 (76.52%), Query Frame = 1
BLAST of Lsi11G001240 vs. TrEMBL
Match: A0A0B0MK27_GOSAR (U-box domain-containing 63-like protein OS=Gossypium arboreum GN=F383_25242 PE=4 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 2.0e-128 Identity = 266/392 (67.86%), Postives = 295/392 (75.26%), Query Frame = 1
BLAST of Lsi11G001240 vs. TrEMBL
Match: A0A061E938_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_011078 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 3.4e-128 Identity = 269/398 (67.59%), Postives = 296/398 (74.37%), Query Frame = 1
BLAST of Lsi11G001240 vs. TAIR10
Match: AT3G19895.1 (AT3G19895.1 RING/U-box superfamily protein) HSP 1 Score: 375.9 bits (964), Expect = 3.1e-104 Identity = 220/380 (57.89%), Postives = 263/380 (69.21%), Query Frame = 1
BLAST of Lsi11G001240 vs. TAIR10
Match: AT3G12940.1 (AT3G12940.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 139.8 bits (351), Expect = 3.7e-33 Identity = 109/333 (32.73%), Postives = 157/333 (47.15%), Query Frame = 1
BLAST of Lsi11G001240 vs. NCBI nr
Match: gi|449445330|ref|XP_004140426.1| (PREDICTED: uncharacterized protein LOC101206682 [Cucumis sativus]) HSP 1 Score: 700.3 bits (1806), Expect = 2.0e-198 Identity = 362/396 (91.41%), Postives = 366/396 (92.42%), Query Frame = 1
BLAST of Lsi11G001240 vs. NCBI nr
Match: gi|659113959|ref|XP_008456842.1| (PREDICTED: uncharacterized protein LOC103496673 isoform X1 [Cucumis melo]) HSP 1 Score: 699.1 bits (1803), Expect = 4.5e-198 Identity = 362/396 (91.41%), Postives = 367/396 (92.68%), Query Frame = 1
BLAST of Lsi11G001240 vs. NCBI nr
Match: gi|645228492|ref|XP_008221021.1| (PREDICTED: uncharacterized protein LOC103321048 [Prunus mume]) HSP 1 Score: 486.1 bits (1250), Expect = 6.0e-134 Identity = 269/397 (67.76%), Postives = 308/397 (77.58%), Query Frame = 1
BLAST of Lsi11G001240 vs. NCBI nr
Match: gi|1009155485|ref|XP_015895739.1| (PREDICTED: uncharacterized protein LOC107429543 [Ziziphus jujuba]) HSP 1 Score: 482.3 bits (1240), Expect = 8.6e-133 Identity = 273/420 (65.00%), Postives = 312/420 (74.29%), Query Frame = 1
BLAST of Lsi11G001240 vs. NCBI nr
Match: gi|658010439|ref|XP_008340467.1| (PREDICTED: uncharacterized protein LOC103403417 [Malus domestica]) HSP 1 Score: 481.1 bits (1237), Expect = 1.9e-132 Identity = 270/402 (67.16%), Postives = 308/402 (76.62%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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