Lsi10G014210 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G014210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 18313558 .. 18314658 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAGTACAGCCCTCGGATTGAAAACCAACAGCTCTTCTTCATCCAACGTGGTCTGGGCCCCACTCCCACTCCGTCCTACGACGGAGTCAAACCCTCCGCCGTCTTTTTCCGGCTCATCGGCGTCTGATCCGATCCGACCCGCCACAACCCGACAAACCAAAATCGCCCGCTTTACGTTCAGAAACTCGAATTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCCCTCCAGCTACTCGATAGCGTCGAAATTCCATCCAACTTGTGTGAGAATCCCGATTTAATTATACCACAAATACTACAAAATTGCTGCCCGCAAAGGCTGGAATTACCATTTTGCCCCAAATCGCACAAAAACGTGGAACAGTGAAACCTCAGAAGCTCGTTCCCGTCGGCAATGCACCGCTCATCCCGCCGCTTTACGCCGCCGTTTCTAGCCGCTTTCGCCTTCACCATCTCTCTATACTCTTCAAATCTGGAAAGAATCTTCTGACTATTGTGGATTTTCAAGATTCGAAGGATTTTAGGGCTTTTTTCTCTACTCGTCCATCCAGTTTCGAAAATAATCCGAACAATATTCTTTCCAGAATCCGAATCGACAAGCTCCGACACGGCGTGTTTAATCGATTGATGCTGTTCGAGGAGTTGCGCCTTGGGGAAAATCTCACCACAAGCAGTACAAGGGAAGATATCGTTACGAAGAGGAAAAAATTGATTCGTCTCTGCCGTAGTGATATCTGAATCCTGCGACGTTCCGGTAGGAGGATCAGTCTCCGGAATCGTCGGAGGAGAAATCTCCGGTTGGATGAGTGTAACGATGGAGTGCTGCGATGATCTAGCAGGTGTGGAAGGCGAGCGAGCGGTTTCGATTGCCATTTTGCAGGACTTGGAGGAGAAGATTCGTTTGAGAAATGAAAAGGAAGAAGTTAGGGATTTGATTTTGTGTGGCTTCAAACAGGAAGGGGTAGGGCGGTGGTGGTGTTGGCGGCGGCGACGGTGGTCGGCGGTGGTGAGAAGGAAGCAGCCGACGTGGACAATGAGGAGTAAAAGAGCGAAGAATTTGTTGCAGAGAGATCTCGGAGTTGACGCCATGGATTGA

mRNA sequence

GGGAGTACAGCCCTCGGATTGAAAACCAACAGCTCTTCTTCATCCAACGTGGTCTGGGCCCCACTCCCACTCCGTCCTACGACGGAGTCAAACCCTCCGCCGTCTTTTTCCGGCTCATCGGCGTCTGATCCGATCCGACCCGCCACAACCCGACAAACCAAAATCGCCCGCTTTACGTTCAGAAACTCGAATTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCCCTCCAGCTACTCGATAGCGTCGAAATTCCATCCAACTTGTGTGAGAATCCCGATTTAATTATACCACAAATACTACAAAATTGCTGCCCGCAAAGGCTGGAATTACCATTTTGCCCCAAATCGCACAAAAACAAGCTCGTTCCCGTCGGCAATGCACCGCTCATCCCGCCGCTTTACGCCGCCGTTTCTAGCCGCTTTCGCCTTCACCATCTCTCTATACTCTTCAAATCTGGAAAGAATCTTCTGACTATTGTGGATTTTCAAGATTCGAAGGATTTTAGGGCTTTTTTCTCTACTCGTCCATCCAGTTTCGAAAATAATCCGAACAATATTCTTTCCAGAATCCGAATCGACAAGCTCCGACACGGCGTGTTTAATCGATTGATGCTGTTCGAGGAGTTGCGCCTTGGGGAAAATCTCACCACAAGCAGTACAAGGGAAGATATCGTTACGAAGAGGAAAAAATTGATTCGTCTCTGCCTGATATCTGAATCCTGCGACGTTCCGGTAGGAGGATCAGTCTCCGGAATCGTCGGAGGAGAAATCTCCGGTTGGATGAGTGTAACGATGGAGTGCTGCGATGATCTAGCAGGTGTGGAAGGCGAGCGAGCGGTTTCGATTGCCATTTTGCAGGACTTGGAGGAGAAGATTCGTTTGAGAAATGAAAAGGAAGAAGTTAGGGATTTGATTTTGTGTGGCTTCAAACAGGAAGGGGTAGGGCGGTGGTGGTGTTGGCGGCGGCGACGGTGGTCGGCGGTGGTGAGAAGGAAGCAGCCGACGTGGACAATGAGGAGTAAAAGAGCGAAGAATTTGTTGCAGAGAGATCTCGGAGTTGACGCCATGGATTGA

Coding sequence (CDS)

GGGAGTACAGCCCTCGGATTGAAAACCAACAGCTCTTCTTCATCCAACGTGGTCTGGGCCCCACTCCCACTCCGTCCTACGACGGAGTCAAACCCTCCGCCGTCTTTTTCCGGCTCATCGGCGTCTGATCCGATCCGACCCGCCACAACCCGACAAACCAAAATCGCCCGCTTTACGTTCAGAAACTCGAATTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCCCTCCAGCTACTCGATAGCGTCGAAATTCCATCCAACTTGTGTGAGAATCCCGATTTAATTATACCACAAATACTACAAAATTGCTGCCCGCAAAGGCTGGAATTACCATTTTGCCCCAAATCGCACAAAAACAAGCTCGTTCCCGTCGGCAATGCACCGCTCATCCCGCCGCTTTACGCCGCCGTTTCTAGCCGCTTTCGCCTTCACCATCTCTCTATACTCTTCAAATCTGGAAAGAATCTTCTGACTATTGTGGATTTTCAAGATTCGAAGGATTTTAGGGCTTTTTTCTCTACTCGTCCATCCAGTTTCGAAAATAATCCGAACAATATTCTTTCCAGAATCCGAATCGACAAGCTCCGACACGGCGTGTTTAATCGATTGATGCTGTTCGAGGAGTTGCGCCTTGGGGAAAATCTCACCACAAGCAGTACAAGGGAAGATATCGTTACGAAGAGGAAAAAATTGATTCGTCTCTGCCTGATATCTGAATCCTGCGACGTTCCGGTAGGAGGATCAGTCTCCGGAATCGTCGGAGGAGAAATCTCCGGTTGGATGAGTGTAACGATGGAGTGCTGCGATGATCTAGCAGGTGTGGAAGGCGAGCGAGCGGTTTCGATTGCCATTTTGCAGGACTTGGAGGAGAAGATTCGTTTGAGAAATGAAAAGGAAGAAGTTAGGGATTTGATTTTGTGTGGCTTCAAACAGGAAGGGGTAGGGCGGTGGTGGTGTTGGCGGCGGCGACGGTGGTCGGCGGTGGTGAGAAGGAAGCAGCCGACGTGGACAATGAGGAGTAAAAGAGCGAAGAATTTGTTGCAGAGAGATCTCGGAGTTGACGCCATGGATTGA

Protein sequence

GSTALGLKTNSSSSSNVVWAPLPLRPTTESNPPPSFSGSSASDPIRPATTRQTKIARFTFRNSNSSSMSSGIATCALQLLDSVEIPSNLCENPDLIIPQILQNCCPQRLELPFCPKSHKNKLVPVGNAPLIPPLYAAVSSRFRLHHLSILFKSGKNLLTIVDFQDSKDFRAFFSTRPSSFENNPNNILSRIRIDKLRHGVFNRLMLFEELRLGENLTTSSTREDIVTKRKKLIRLCLISESCDVPVGGSVSGIVGGEISGWMSVTMECCDDLAGVEGERAVSIAILQDLEEKIRLRNEKEEVRDLILCGFKQEGVGRWWCWRRRRWSAVVRRKQPTWTMRSKRAKNLLQRDLGVDAMD
Homology
[Close]
BLAST of Lsi10G014210 vs. TrEMBL
Match: A0A0A0KH58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187400 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.1e-53
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 1   GSTALGLKTNSSSSSNVVWAPLPLRPTTESNPPPSFSGSSASDPIRPATTRQTKIARFTF 60
           GSTALGLKT SSSSSNVVWAPLP+ PTTESNPPPSFSGSSASDP RPATTRQTKIARFT 
Sbjct: 5   GSTALGLKTKSSSSSNVVWAPLPVLPTTESNPPPSFSGSSASDPTRPATTRQTKIARFTL 64

Query: 61  RNSNSSSMSSGIATCALQLLDSVEIPSNLCENPDLIIPQILQNCCPQRLELPFCPKSHKN 120
           RN NSSSMSSGIATCALQL  +VEIPSNLCENPDLIIPQILQNCCPQ LELPFCPKSHKN
Sbjct: 65  RNLNSSSMSSGIATCALQLFATVEIPSNLCENPDLIIPQILQNCCPQILELPFCPKSHKN 124

[Close]
BLAST of Lsi10G014210 vs. TrEMBL
Match: A0A0A0KFB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187410 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 161 VDFQDSKDFRAFFSTRPSSFENNPNNILSRIRIDKLRHGVFNRLMLFEELRLGENLTTSS 220
           +DFQDSKDFR FFSTRPS FENNPN+IL+ I I KL + VF+ LMLFEEL  GENL  SS
Sbjct: 1   MDFQDSKDFRTFFSTRPSGFENNPNDILAGIGIGKLGYSVFDGLMLFEELGFGENLAASS 60

Query: 221 TREDIVTKRKKLIRLC 237
           T EDIVTK ++LI LC
Sbjct: 61  TGEDIVTKGEELISLC 76

[Close]
BLAST of Lsi10G014210 vs. NCBI nr
Match: gi|700191892|gb|KGN47096.1| (hypothetical protein Csa_6G187400 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 5.9e-53
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 1   GSTALGLKTNSSSSSNVVWAPLPLRPTTESNPPPSFSGSSASDPIRPATTRQTKIARFTF 60
           GSTALGLKT SSSSSNVVWAPLP+ PTTESNPPPSFSGSSASDP RPATTRQTKIARFT 
Sbjct: 5   GSTALGLKTKSSSSSNVVWAPLPVLPTTESNPPPSFSGSSASDPTRPATTRQTKIARFTL 64

Query: 61  RNSNSSSMSSGIATCALQLLDSVEIPSNLCENPDLIIPQILQNCCPQRLELPFCPKSHKN 120
           RN NSSSMSSGIATCALQL  +VEIPSNLCENPDLIIPQILQNCCPQ LELPFCPKSHKN
Sbjct: 65  RNLNSSSMSSGIATCALQLFATVEIPSNLCENPDLIIPQILQNCCPQILELPFCPKSHKN 124

[Close]
BLAST of Lsi10G014210 vs. NCBI nr
Match: gi|700191893|gb|KGN47097.1| (hypothetical protein Csa_6G187410 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 161 VDFQDSKDFRAFFSTRPSSFENNPNNILSRIRIDKLRHGVFNRLMLFEELRLGENLTTSS 220
           +DFQDSKDFR FFSTRPS FENNPN+IL+ I I KL + VF+ LMLFEEL  GENL  SS
Sbjct: 1   MDFQDSKDFRTFFSTRPSGFENNPNDILAGIGIGKLGYSVFDGLMLFEELGFGENLAASS 60

Query: 221 TREDIVTKRKKLIRLC 237
           T EDIVTK ++LI LC
Sbjct: 61  TGEDIVTKGEELISLC 76

The following BLAST results are available for this feature:
BLAST of Lsi10G014210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G014210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH58_CUCSA4.1e-5391.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187400 PE=4 SV=1[more]
A0A0A0KFB4_CUCSA1.3e-1971.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187410 PE=4 SV=1[more]
BLAST of Lsi10G014210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G014210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191892|gb|KGN47096.1|5.9e-5391.67hypothetical protein Csa_6G187400 [Cucumis sativus][more]
gi|700191893|gb|KGN47097.1|1.9e-1971.05hypothetical protein Csa_6G187410 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G014210.1Lsi10G014210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G014210Csa6G187400Cucumber (Chinese Long) v2culsiB413
Lsi10G014210CmoCh20G003840Cucurbita moschata (Rifu)cmolsiB490
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G014210Cucumber (Gy14) v1cgylsiB222
Lsi10G014210Cucumber (Gy14) v1cgylsiB292
Lsi10G014210Cucurbita maxima (Rimu)cmalsiB196
Lsi10G014210Cucurbita maxima (Rimu)cmalsiB506
Lsi10G014210Cucurbita maxima (Rimu)cmalsiB547
Lsi10G014210Cucurbita maxima (Rimu)cmalsiB632
Lsi10G014210Cucurbita maxima (Rimu)cmalsiB745
Lsi10G014210Cucurbita moschata (Rifu)cmolsiB186
Lsi10G014210Cucurbita moschata (Rifu)cmolsiB532
Lsi10G014210Cucurbita moschata (Rifu)cmolsiB738
Lsi10G014210Cucurbita pepo (Zucchini)cpelsiB219
Lsi10G014210Cucurbita pepo (Zucchini)cpelsiB318
Lsi10G014210Cucurbita pepo (Zucchini)cpelsiB412
Lsi10G014210Cucurbita pepo (Zucchini)cpelsiB487
Lsi10G014210Cucurbita pepo (Zucchini)cpelsiB588
Lsi10G014210Cucurbita pepo (Zucchini)cpelsiB700
Lsi10G014210Wild cucumber (PI 183967)cpilsiB335
Lsi10G014210Wild cucumber (PI 183967)cpilsiB416
Lsi10G014210Cucumber (Chinese Long) v2culsiB335
Lsi10G014210Melon (DHL92) v3.5.1lsimeB044
Lsi10G014210Melon (DHL92) v3.5.1lsimeB071
Lsi10G014210Watermelon (Charleston Gray)lsiwcgB054
Lsi10G014210Watermelon (Charleston Gray)lsiwcgB071
Lsi10G014210Watermelon (97103) v1lsiwmB049
Lsi10G014210Watermelon (97103) v1lsiwmB056
Lsi10G014210Watermelon (97103) v1lsiwmB057
Lsi10G014210Watermelon (97103) v1lsiwmB078
Lsi10G014210Cucumber (Gy14) v2cgyblsiB002
Lsi10G014210Cucumber (Gy14) v2cgyblsiB378
Lsi10G014210Melon (DHL92) v3.6.1lsimedB046
Lsi10G014210Silver-seed gourdcarlsiB137
Lsi10G014210Silver-seed gourdcarlsiB303
Lsi10G014210Silver-seed gourdcarlsiB348
Lsi10G014210Silver-seed gourdcarlsiB469
Lsi10G014210Silver-seed gourdcarlsiB910
Lsi10G014210Cucumber (Chinese Long) v3cuclsiB359
Lsi10G014210Cucumber (Chinese Long) v3cuclsiB438
Lsi10G014210Watermelon (97103) v2lsiwmbB052
Lsi10G014210Watermelon (97103) v2lsiwmbB069
Lsi10G014210Wax gourdlsiwgoB068
Lsi10G014210Wax gourdlsiwgoB096