Lsi10G014100 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G014100
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 18190624 .. 18190929 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCATTGACGGCCGATCAAATCGAAATCCTAGCTGTTTCCTCAGCCGTAGCTGTACTATCAAGTATTCACTGGGTATTAAATCCAGTAATAGTCGAACATCTGAAAATCAGATTGATATGGTAGAAGATGAAGAAGAAAAGGAGAATACCACCGCCGGCGATAAGCTCCGGAATGGGAAAGCCCGCCACCAGCAGCTTCCTCCGACGGCGAAAGGAGGTTTATGCAACGTTTCGATCTGGGCGAATCACATCACATGGTCTTCGTACTTGAAAATTGCTATACAGTGGAATAGTGGATGA

mRNA sequence

ATGGCCACCATTGACGGCCGATCAAATCGAAATCCTAGCTGTTTCCTCAGCCGTAGCTGTACTATCAAGTATTCACTGGGTATTAAATCCAGTAATAGTCGAACATCTGAAAATCAGATTGATATGGTAGAAGATGAAGAAGAAAAGGAGAATACCACCGCCGGCGATAAGCTCCGGAATGGGAAAGCCCGCCACCAGCAGCTTCCTCCGACGGCGAAAGGAGGTTTATGCAACGTTTCGATCTGGGCGAATCACATCACATGGTCTTCGTACTTGAAAATTGCTATACAGTGGAATAGTGGATGA

Coding sequence (CDS)

ATGGCCACCATTGACGGCCGATCAAATCGAAATCCTAGCTGTTTCCTCAGCCGTAGCTGTACTATCAAGTATTCACTGGGTATTAAATCCAGTAATAGTCGAACATCTGAAAATCAGATTGATATGGTAGAAGATGAAGAAGAAAAGGAGAATACCACCGCCGGCGATAAGCTCCGGAATGGGAAAGCCCGCCACCAGCAGCTTCCTCCGACGGCGAAAGGAGGTTTATGCAACGTTTCGATCTGGGCGAATCACATCACATGGTCTTCGTACTTGAAAATTGCTATACAGTGGAATAGTGGATGA

Protein sequence

MATIDGRSNRNPSCFLSRSCTIKYSLGIKSSNSRTSENQIDMVEDEEEKENTTAGDKLRNGKARHQQLPPTAKGGLCNVSIWANHITWSSYLKIAIQWNSG
Homology
[Close]
BLAST of Lsi10G014100 vs. TrEMBL
Match: A0A0A0KC71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188060 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.4e-08
Identity = 46/99 (46.46%), Postives = 53/99 (53.54%), Query Frame = 1 

Query: 1  MATIDGRSNRNPSCFLSRSCTIKYSLGIKSSNSRTSENQIDMVEDEEEKENTTAGDKLRN 60
          MATIDG SN N   FLS S                   QI   +DE+E + TT GD+LR 
Sbjct: 6  MATIDGLSNPNLISFLSVS-------------------QIGNGKDEDEMDITTVGDELRK 65

Query: 61 GKARHQQLPPTAKGGLCNVSIWANHITWSS-YLKIAIQW 99
          GKARHQQLPPTA+GGL  VS     I  SS Y+ +   W
Sbjct: 66 GKARHQQLPPTARGGLSYVSDPTVEIILSSEYMGLTWYW 85

[Close]
BLAST of Lsi10G014100 vs. NCBI nr
Match: gi|700191909|gb|KGN47113.1| (hypothetical protein Csa_6G188060 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 46/99 (46.46%), Postives = 53/99 (53.54%), Query Frame = 1 

Query: 1  MATIDGRSNRNPSCFLSRSCTIKYSLGIKSSNSRTSENQIDMVEDEEEKENTTAGDKLRN 60
          MATIDG SN N   FLS S                   QI   +DE+E + TT GD+LR 
Sbjct: 6  MATIDGLSNPNLISFLSVS-------------------QIGNGKDEDEMDITTVGDELRK 65

Query: 61 GKARHQQLPPTAKGGLCNVSIWANHITWSS-YLKIAIQW 99
          GKARHQQLPPTA+GGL  VS     I  SS Y+ +   W
Sbjct: 66 GKARHQQLPPTARGGLSYVSDPTVEIILSSEYMGLTWYW 85

The following BLAST results are available for this feature:
BLAST of Lsi10G014100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G014100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC71_CUCSA7.4e-0846.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188060 PE=4 SV=1[more]
BLAST of Lsi10G014100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G014100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191909|gb|KGN47113.1|1.1e-0746.46hypothetical protein Csa_6G188060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G014100.1Lsi10G014100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G014100Csa6G188060Cucumber (Chinese Long) v2culsiB413
Lsi10G014100CSPI06G14090Wild cucumber (PI 183967)cpilsiB416
Lsi10G014100CsaV3_6G016500Cucumber (Chinese Long) v3cuclsiB438
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G014100Silver-seed gourdcarlsiB303
Lsi10G014100Silver-seed gourdcarlsiB348
Lsi10G014100Silver-seed gourdcarlsiB469
Lsi10G014100Silver-seed gourdcarlsiB910
Lsi10G014100Cucumber (Chinese Long) v3cuclsiB359
Lsi10G014100Watermelon (97103) v2lsiwmbB052
Lsi10G014100Watermelon (97103) v2lsiwmbB069
Lsi10G014100Wax gourdlsiwgoB068
Lsi10G014100Wax gourdlsiwgoB096
Lsi10G014100Cucumber (Gy14) v1cgylsiB222
Lsi10G014100Cucumber (Gy14) v1cgylsiB292
Lsi10G014100Cucurbita maxima (Rimu)cmalsiB196
Lsi10G014100Cucurbita maxima (Rimu)cmalsiB506
Lsi10G014100Cucurbita maxima (Rimu)cmalsiB547
Lsi10G014100Cucurbita maxima (Rimu)cmalsiB632
Lsi10G014100Cucurbita maxima (Rimu)cmalsiB745
Lsi10G014100Cucurbita moschata (Rifu)cmolsiB186
Lsi10G014100Cucurbita moschata (Rifu)cmolsiB490
Lsi10G014100Cucurbita moschata (Rifu)cmolsiB532
Lsi10G014100Cucurbita moschata (Rifu)cmolsiB738
Lsi10G014100Cucurbita moschata (Rifu)cmolsiB771
Lsi10G014100Cucurbita pepo (Zucchini)cpelsiB219
Lsi10G014100Cucurbita pepo (Zucchini)cpelsiB318
Lsi10G014100Cucurbita pepo (Zucchini)cpelsiB412
Lsi10G014100Cucurbita pepo (Zucchini)cpelsiB487
Lsi10G014100Cucurbita pepo (Zucchini)cpelsiB588
Lsi10G014100Cucurbita pepo (Zucchini)cpelsiB700
Lsi10G014100Wild cucumber (PI 183967)cpilsiB335
Lsi10G014100Cucumber (Chinese Long) v2culsiB335
Lsi10G014100Melon (DHL92) v3.5.1lsimeB044
Lsi10G014100Melon (DHL92) v3.5.1lsimeB071
Lsi10G014100Watermelon (Charleston Gray)lsiwcgB054
Lsi10G014100Watermelon (Charleston Gray)lsiwcgB071
Lsi10G014100Watermelon (97103) v1lsiwmB049
Lsi10G014100Watermelon (97103) v1lsiwmB056
Lsi10G014100Watermelon (97103) v1lsiwmB057
Lsi10G014100Watermelon (97103) v1lsiwmB063
Lsi10G014100Watermelon (97103) v1lsiwmB078
Lsi10G014100Cucumber (Gy14) v2cgyblsiB002
Lsi10G014100Cucumber (Gy14) v2cgyblsiB378
Lsi10G014100Melon (DHL92) v3.6.1lsimedB046
Lsi10G014100Silver-seed gourdcarlsiB137