Lsi10G013590 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G013590
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionHistone H4
Locationchr10 : 17781225 .. 17782593 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGTGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCAAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGTTAGGTTTAGGGTTTAATTCGAAGAGTATTTGTAGACCATTACTTTTGATCTTAAAATTTGTGGGCGAACTCGTTCTTATTGGTTTAATGTAAGTTAATTCCTCATTAGTTGTGAAGCGATCGAATGTTTAGTTCATTGAAGCGATGTGCTATATAAGAATTTTGCTTTTATTCTGTTTTTTTTGTTCTTTCGACATTTAACTAATATCTTAGAGCTAATTGTCTAACCGTCTATAATCTGAATTCAATGAACTTTGCTACACGTTTGCATACATTGAAAAGAAGGCAGGCACTGGGGAGTGGGTTTGATTTGAACATCTAATTTCAACCACTATTCTCCATATGTGATGAATGTTCTACTGTTATCCTGAAATGTGTATTGCATTGATATGTGCTATAATTGAACCTATGAATTCTTAAAATGCCAATTGAACTAGAAATTTAATTGATGGGTGAAGGCAAATTTAATATGGTATCATCCAGCCTATATTGTCTCTGTTTGGGCTGTTATTTTGTAAGACGCATGGTTTGCCGAAAAATTGTGTTTAGATTCAAAACCTTCAGTTATGAACTGGTTTAAAATTTCATATGAAATTTTTATTATTATCTCTAGCTAGCATTTTAATTAGTTGGAAGCCCTCTTGTTTTAGGGGGGTTTTGTTGGCTTGGTTTTTTTTTTTTTGTTGCCCTTGCATTATTTCATTTTTTTTTCTCAATGAAAGCAATTGTTTCTATAAAAAAAAAAATCATATGAAATTTATATTTCGTGCCCTGCGAACAATTAGGTCATTTGTTAATGGTAGGAATTTTAAGGATTATATGTTTCTCTGTGCTGCCCGAATGGAGGTATGAGTTAACTCAATTTGCTGTTTACATGAATCAAGTTCATTTGGCTTTGATAATCCAAGGGAGGAATTAATGCAAATTGGAGGCTGTTTGAATCAATGTTACTGGTTAACCTTTTAATTCCTGCAGTAGCTATTAATGCTTCAAATAGCAGGTTGGCCAAGAAGAGGCACTTCTATAGCCGTATCCTTTGCTCTATTCATAATAATTTTTAG

mRNA sequence

ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGTGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCAAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGTAGCTATTAATGCTTCAAATAGCAGGTTGGCCAAGAAGAGGCACTTCTATAGCCGTATCCTTTGCTCTATTCATAATAATTTTTAG

Coding sequence (CDS)

ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGTGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCAAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGTAGCTATTAATGCTTCAAATAGCAGGTTGGCCAAGAAGAGGCACTTCTATAGCCGTATCCTTTGCTCTATTCATAATAATTTTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKKRHFYSRILCSIHNNF
Homology
[Close]
BLAST of Lsi10G013590 vs. Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. TrEMBL
Match: W6TZP8_ECHGR (Histone H4 OS=Echinococcus granulosus GN=EGR_10837 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-49
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKKRH 118
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG  + A+  +L   +H
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGARVRAARLKLISHKH 117

[Close]
BLAST of Lsi10G013590 vs. TrEMBL
Match: W5GDX3_WHEAT (Histone H4 OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-48
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASN 110
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV +   N
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVTVRRLN 109

[Close]
BLAST of Lsi10G013590 vs. TrEMBL
Match: G7JVF8_MEDTR (Histone H4 OS=Medicago truncatula GN=MTR_4g128150 PE=3 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-48
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRL 113
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV  N +  +L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVEPNTAVPKL 112

[Close]
BLAST of Lsi10G013590 vs. TrEMBL
Match: A0A0D3DSU9_BRAOL (Histone H4 OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-48
Identity = 110/126 (87.30%), Postives = 113/126 (89.68%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV--------AINASNSRL 119
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV        A   + S L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVENPNFLILAGKHNFSVL 120

[Close]
BLAST of Lsi10G013590 vs. TrEMBL
Match: A7S6Z7_NEMVE (Histone H4 OS=Nematostella vectensis GN=v1g207796 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-48
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKK 116
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGV  +A    + K+
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGVGKSAGKKAVKKQ 115

[Close]
BLAST of Lsi10G013590 vs. TAIR10
Match: AT1G07660.1 (AT1G07660.1 Histone superfamily protein)

HSP 1 Score: 196.8 bits (499), Expect = 8.1e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. TAIR10
Match: AT1G07820.1 (AT1G07820.1 Histone superfamily protein)

HSP 1 Score: 196.8 bits (499), Expect = 8.1e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. TAIR10
Match: AT2G28740.1 (AT2G28740.1 histone H4)

HSP 1 Score: 196.8 bits (499), Expect = 8.1e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. TAIR10
Match: AT3G45930.1 (AT3G45930.1 Histone superfamily protein)

HSP 1 Score: 196.8 bits (499), Expect = 8.1e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. TAIR10
Match: AT3G53730.1 (AT3G53730.1 Histone superfamily protein)

HSP 1 Score: 196.8 bits (499), Expect = 8.1e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of Lsi10G013590 vs. NCBI nr
Match: gi|576690507|gb|EUB54305.1| (Histone H4 [Echinococcus granulosus])

HSP 1 Score: 202.6 bits (514), Expect = 4.2e-49
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKKRH 118
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG  + A+  +L   +H
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGARVRAARLKLISHKH 117

[Close]
BLAST of Lsi10G013590 vs. NCBI nr
Match: gi|823155106|ref|XP_012477435.1| (PREDICTED: uncharacterized protein LOC105793039 [Gossypium raimondii])

HSP 1 Score: 201.8 bits (512), Expect = 7.2e-49
Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKKRH 118
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG    AS   L+  +H
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGYREASKPTLSSSKH 117

[Close]
BLAST of Lsi10G013590 vs. NCBI nr
Match: gi|922364196|ref|XP_003610120.2| (core histone H2A/H2B/H3/H4 [Medicago truncatula])

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRL 113
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV  N +  +L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVEPNTAVPKL 112

[Close]
BLAST of Lsi10G013590 vs. NCBI nr
Match: gi|156382476|ref|XP_001632579.1| (predicted protein [Nematostella vectensis])

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-48
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKK 116
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGV  +A    + K+
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGVGKSAGKKAVKKQ 115

[Close]
BLAST of Lsi10G013590 vs. NCBI nr
Match: gi|676482084|ref|XP_009062584.1| (hypothetical protein LOTGIDRAFT_175997 [Lottia gigantea])

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-48
Identity = 103/114 (90.35%), Postives = 108/114 (94.74%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAK 115
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG A  A  ++ A+
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGAKKAGKAKAAR 114

The following BLAST results are available for this feature:
BLAST of Lsi10G013590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H4_EUCGL1.4e-49100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ1.4e-49100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH1.4e-49100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2[more]
H41_WHEAT1.4e-49100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2[more]
H4_PEA1.4e-49100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
BLAST of Lsi10G013590 vs. TrEMBL
Match NameE-valueIdentityDescription
W6TZP8_ECHGR2.9e-4988.03Histone H4 OS=Echinococcus granulosus GN=EGR_10837 PE=3 SV=1[more]
W5GDX3_WHEAT1.1e-4895.41Histone H4 OS=Triticum aestivum PE=3 SV=1[more]
G7JVF8_MEDTR1.5e-4893.75Histone H4 OS=Medicago truncatula GN=MTR_4g128150 PE=3 SV=2[more]
A0A0D3DSU9_BRAOL1.9e-4887.30Histone H4 OS=Brassica oleracea var. oleracea PE=3 SV=1[more]
A7S6Z7_NEMVE2.5e-4888.70Histone H4 OS=Nematostella vectensis GN=v1g207796 PE=3 SV=1[more]
BLAST of Lsi10G013590 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07660.18.1e-51100.00 Histone superfamily protein[more]
AT1G07820.18.1e-51100.00 Histone superfamily protein[more]
AT2G28740.18.1e-51100.00 histone H4[more]
AT3G45930.18.1e-51100.00 Histone superfamily protein[more]
AT3G53730.18.1e-51100.00 Histone superfamily protein[more]
BLAST of Lsi10G013590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|576690507|gb|EUB54305.1|4.2e-4988.03Histone H4 [Echinococcus granulosus][more]
gi|823155106|ref|XP_012477435.1|7.2e-4990.60PREDICTED: uncharacterized protein LOC105793039 [Gossypium raimondii][more]
gi|922364196|ref|XP_003610120.2|2.1e-4893.75core histone H2A/H2B/H3/H4 [Medicago truncatula][more]
gi|156382476|ref|XP_001632579.1|3.6e-4888.70predicted protein [Nematostella vectensis][more]
gi|676482084|ref|XP_009062584.1|3.6e-4890.35hypothetical protein LOTGIDRAFT_175997 [Lottia gigantea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR019809Histone_H4_CS
IPR009072Histone-fold
IPR001951Histone_H4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G013590.1Lsi10G013590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001951Histone H4PRINTSPR00623HISTONEH4coord: 5..16
score: 5.0E-63coord: 20..39
score: 5.0E-63coord: 62..76
score: 5.0E-63coord: 77..89
score: 5.0E-63coord: 89..100
score: 5.0E-63coord: 40..60
score: 5.0
IPR001951Histone H4SMARTSM00417h44coord: 16..90
score: 2.0
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 2..102
score: 7.9
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 3..102
score: 6.59
IPR019809Histone H4, conserved sitePROSITEPS00047HISTONE_H4coord: 15..19
scor
NoneNo IPR availablePANTHERPTHR10484HISTONE H4coord: 1..102
score: 6.7E
NoneNo IPR availablePFAMPF15511CENP-T_Ccoord: 36..97
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G013590Cp4.1LG05g09060Cucurbita pepo (Zucchini)cpelsiB588
Lsi10G013590CsGy6G014510Cucumber (Gy14) v2cgyblsiB378
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G013590Bottle gourd (USVL1VR-Ls)lsilsiB040
Lsi10G013590Bottle gourd (USVL1VR-Ls)lsilsiB026
Lsi10G013590Bottle gourd (USVL1VR-Ls)lsilsiB037
Lsi10G013590Bottle gourd (USVL1VR-Ls)lsilsiB043
Lsi10G013590Cucumber (Gy14) v1cgylsiB058
Lsi10G013590Cucumber (Gy14) v1cgylsiB272
Lsi10G013590Cucumber (Gy14) v1cgylsiB286
Lsi10G013590Cucumber (Gy14) v1cgylsiB291
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB196
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB227
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB398
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB506
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB547
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB595
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB630
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB631
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB745
Lsi10G013590Cucurbita maxima (Rimu)cmalsiB779
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB186
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB215
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB383
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB619
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB490
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB532
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB578
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB620
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB738
Lsi10G013590Cucurbita moschata (Rifu)cmolsiB771
Lsi10G013590Cucurbita pepo (Zucchini)cpelsiB219
Lsi10G013590Cucurbita pepo (Zucchini)cpelsiB390
Lsi10G013590Cucurbita pepo (Zucchini)cpelsiB412
Lsi10G013590Cucurbita pepo (Zucchini)cpelsiB435
Lsi10G013590Cucurbita pepo (Zucchini)cpelsiB487
Lsi10G013590Cucurbita pepo (Zucchini)cpelsiB700
Lsi10G013590Wild cucumber (PI 183967)cpilsiB160
Lsi10G013590Wild cucumber (PI 183967)cpilsiB246
Lsi10G013590Wild cucumber (PI 183967)cpilsiB336
Lsi10G013590Wild cucumber (PI 183967)cpilsiB334
Lsi10G013590Wild cucumber (PI 183967)cpilsiB416
Lsi10G013590Cucumber (Chinese Long) v2culsiB161
Lsi10G013590Cucumber (Chinese Long) v2culsiB247
Lsi10G013590Cucumber (Chinese Long) v2culsiB334
Lsi10G013590Cucumber (Chinese Long) v2culsiB413
Lsi10G013590Melon (DHL92) v3.5.1lsimeB070
Lsi10G013590Melon (DHL92) v3.5.1lsimeB042
Lsi10G013590Melon (DHL92) v3.5.1lsimeB044
Lsi10G013590Melon (DHL92) v3.5.1lsimeB075
Lsi10G013590Watermelon (Charleston Gray)lsiwcgB037
Lsi10G013590Watermelon (Charleston Gray)lsiwcgB050
Lsi10G013590Watermelon (Charleston Gray)lsiwcgB054
Lsi10G013590Watermelon (Charleston Gray)lsiwcgB066
Lsi10G013590Watermelon (Charleston Gray)lsiwcgB067
Lsi10G013590Watermelon (Charleston Gray)lsiwcgB070
Lsi10G013590Watermelon (97103) v1lsiwmB048
Lsi10G013590Watermelon (97103) v1lsiwmB058
Lsi10G013590Watermelon (97103) v1lsiwmB063
Lsi10G013590Watermelon (97103) v1lsiwmB071
Lsi10G013590Watermelon (97103) v1lsiwmB078
Lsi10G013590Cucumber (Gy14) v2cgyblsiB146
Lsi10G013590Cucumber (Gy14) v2cgyblsiB233
Lsi10G013590Cucumber (Gy14) v2cgyblsiB306
Lsi10G013590Melon (DHL92) v3.6.1lsimedB077
Lsi10G013590Melon (DHL92) v3.6.1lsimedB044
Lsi10G013590Melon (DHL92) v3.6.1lsimedB046
Lsi10G013590Melon (DHL92) v3.6.1lsimedB072
Lsi10G013590Silver-seed gourdcarlsiB137
Lsi10G013590Silver-seed gourdcarlsiB279
Lsi10G013590Silver-seed gourdcarlsiB303
Lsi10G013590Silver-seed gourdcarlsiB400
Lsi10G013590Silver-seed gourdcarlsiB910
Lsi10G013590Cucumber (Chinese Long) v3cuclsiB177
Lsi10G013590Cucumber (Chinese Long) v3cuclsiB270
Lsi10G013590Cucumber (Chinese Long) v3cuclsiB358
Lsi10G013590Cucumber (Chinese Long) v3cuclsiB438
Lsi10G013590Watermelon (97103) v2lsiwmbB040
Lsi10G013590Watermelon (97103) v2lsiwmbB052
Lsi10G013590Watermelon (97103) v2lsiwmbB066
Lsi10G013590Watermelon (97103) v2lsiwmbB068
Lsi10G013590Wax gourdlsiwgoB059
Lsi10G013590Wax gourdlsiwgoB068