Lsi10G013580 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G013580
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionHistone H4
Locationchr10 : 17774736 .. 17775047 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTAGGAAAGGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGCAGAGGCGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTAGAGAATGTTATCCGTGATGCTGTGACCTATACTGAGCACGCTAGGAGGAAGACGGTGACTGCTATGGATGTGGTCTATGCTTTGAAAAGGCAGGGAAGGACTCTGTATGGTTTCGGAGGTTAG

mRNA sequence

ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTAGGAAAGGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGCAGAGGCGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTAGAGAATGTTATCCGTGATGCTGTGACCTATACTGAGCACGCTAGGAGGAAGACGGTGACTGCTATGGATGTGGTCTATGCTTTGAAAAGGCAGGGAAGGACTCTGTATGGTTTCGGAGGTTAG

Coding sequence (CDS)

ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTAGGAAAGGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGCAGAGGCGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTAGAGAATGTTATCCGTGATGCTGTGACCTATACTGAGCACGCTAGGAGGAAGACGGTGACTGCTATGGATGTGGTCTATGCTTTGAAAAGGCAGGGAAGGACTCTGTATGGTTTCGGAGGTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Homology
[Close]
BLAST of Lsi10G013580 vs. Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TrEMBL
Match: A2WWR4_ORYSI (Histone H4 OS=Oryza sativa subsp. indica GN=OsI_04340 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TrEMBL
Match: A9NJR8_PICSI (Histone H4 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TrEMBL
Match: A9PA83_POPTR (Histone H4 OS=Populus trichocarpa GN=POPTR_0005s11740g PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TrEMBL
Match: H9MAC8_PINRA (Histone H4 OS=Pinus radiata GN=0_18315_01 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TrEMBL
Match: B9MST3_SOYBN (Histone H4 OS=Glycine max GN=GLYMA_02G224100 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TAIR10
Match: AT1G07660.1 (AT1G07660.1 Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TAIR10
Match: AT1G07820.1 (AT1G07820.1 Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TAIR10
Match: AT2G28740.1 (AT2G28740.1 histone H4)

HSP 1 Score: 199.5 bits (506), Expect = 9.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TAIR10
Match: AT3G45930.1 (AT3G45930.1 Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. TAIR10
Match: AT3G53730.1 (AT3G53730.1 Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. NCBI nr
Match: gi|976922550|gb|KVI06931.1| (Histone core [Cynara cardunculus var. scolymus])

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 107 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 166

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 167 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 209

[Close]
BLAST of Lsi10G013580 vs. NCBI nr
Match: gi|641854208|gb|KDO73016.1| (hypothetical protein CISIN_1g047769mg, partial [Citrus sinensis])

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 29  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 88

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 89  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131

[Close]
BLAST of Lsi10G013580 vs. NCBI nr
Match: gi|15226944|ref|NP_180441.1| (histone H4 [Arabidopsis thaliana])

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. NCBI nr
Match: gi|960491942|ref|XP_014751185.1| (PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon])

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of Lsi10G013580 vs. NCBI nr
Match: gi|670426610|ref|XP_008653962.1| (PREDICTED: uncharacterized protein LOC103634138 [Zea mays])

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:
BLAST of Lsi10G013580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H4_EUCGL1.8e-50100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ1.8e-50100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH1.8e-50100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2[more]
H41_WHEAT1.8e-50100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2[more]
H4_PEA1.8e-50100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
BLAST of Lsi10G013580 vs. TrEMBL
Match NameE-valueIdentityDescription
A2WWR4_ORYSI2.0e-48100.00Histone H4 OS=Oryza sativa subsp. indica GN=OsI_04340 PE=3 SV=1[more]
A9NJR8_PICSI2.0e-48100.00Histone H4 OS=Picea sitchensis PE=2 SV=1[more]
A9PA83_POPTR2.0e-48100.00Histone H4 OS=Populus trichocarpa GN=POPTR_0005s11740g PE=2 SV=1[more]
H9MAC8_PINRA2.0e-48100.00Histone H4 OS=Pinus radiata GN=0_18315_01 PE=3 SV=1[more]
B9MST3_SOYBN2.0e-48100.00Histone H4 OS=Glycine max GN=GLYMA_02G224100 PE=2 SV=1[more]
BLAST of Lsi10G013580 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07660.19.9e-52100.00 Histone superfamily protein[more]
AT1G07820.19.9e-52100.00 Histone superfamily protein[more]
AT2G28740.19.9e-52100.00 histone H4[more]
AT3G45930.19.9e-52100.00 Histone superfamily protein[more]
AT3G53730.19.9e-52100.00 Histone superfamily protein[more]
BLAST of Lsi10G013580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|976922550|gb|KVI06931.1|2.8e-48100.00Histone core [Cynara cardunculus var. scolymus][more]
gi|641854208|gb|KDO73016.1|2.8e-48100.00hypothetical protein CISIN_1g047769mg, partial [Citrus sinensis][more]
gi|15226944|ref|NP_180441.1|2.8e-48100.00histone H4 [Arabidopsis thaliana][more]
gi|960491942|ref|XP_014751185.1|2.8e-48100.00PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon][more]
gi|670426610|ref|XP_008653962.1|2.8e-48100.00PREDICTED: uncharacterized protein LOC103634138 [Zea mays][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR019809Histone_H4_CS
IPR009072Histone-fold
IPR001951Histone_H4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009579 thylakoid
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G013580.1Lsi10G013580.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001951Histone H4PRINTSPR00623HISTONEH4coord: 89..100
score: 2.2E-63coord: 5..16
score: 2.2E-63coord: 77..89
score: 2.2E-63coord: 20..39
score: 2.2E-63coord: 40..60
score: 2.2E-63coord: 62..76
score: 2.2
IPR001951Histone H4SMARTSM00417h44coord: 16..90
score: 2.0
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 2..103
score: 1.8
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 3..102
score: 4.04
IPR019809Histone H4, conserved sitePROSITEPS00047HISTONE_H4coord: 15..19
scor
NoneNo IPR availablePANTHERPTHR10484HISTONE H4coord: 1..103
score: 1.1E
NoneNo IPR availablePFAMPF15511CENP-T_Ccoord: 35..96
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G013580Csa6G191570Cucumber (Chinese Long) v2culsiB413
Lsi10G013580CSPI06G14640Wild cucumber (PI 183967)cpilsiB416
Lsi10G013580Cucsa.172310Cucumber (Gy14) v1cgylsiB286
Lsi10G013580CmaCh20G004160Cucurbita maxima (Rimu)cmalsiB506
Lsi10G013580CmaCh02G008160Cucurbita maxima (Rimu)cmalsiB547
Lsi10G013580CmaCh13G001760Cucurbita maxima (Rimu)cmalsiB194
Lsi10G013580CmaCh01G005460Cucurbita maxima (Rimu)cmalsiB400
Lsi10G013580CmoCh13G001800Cucurbita moschata (Rifu)cmolsiB184
Lsi10G013580CmoCh20G004550Cucurbita moschata (Rifu)cmolsiB490
Lsi10G013580CmoCh02G008210Cucurbita moschata (Rifu)cmolsiB532
Lsi10G013580Cla005035Watermelon (97103) v1lsiwmB051
Lsi10G013580Cla013292Watermelon (97103) v1lsiwmB078
Lsi10G013580MELO3C013686Melon (DHL92) v3.5.1lsimeB044
Lsi10G013580ClCG02G020340Watermelon (Charleston Gray)lsiwcgB054
Lsi10G013580ClCG03G002190Watermelon (Charleston Gray)lsiwcgB063
Lsi10G013580MELO3C013686.2Melon (DHL92) v3.6.1lsimedB046
Lsi10G013580Cla97C03G053190Watermelon (97103) v2lsiwmbB062
Lsi10G013580Cla97C02G046300Watermelon (97103) v2lsiwmbB052
Lsi10G013580Bhi10G000548Wax gourdlsiwgoB068
Lsi10G013580Cp4.1LG16g06070Cucurbita pepo (Zucchini)cpelsiB219
Lsi10G013580CsGy6G014550Cucumber (Gy14) v2cgyblsiB378
Lsi10G013580Carg12320Silver-seed gourdcarlsiB401
Lsi10G013580Carg03301Silver-seed gourdcarlsiB303
Lsi10G013580CsaV3_6G017110Cucumber (Chinese Long) v3cuclsiB438
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi10G013580Lsi02G014210Bottle gourd (USVL1VR-Ls)lsilsiB034
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G013580Silver-seed gourdcarlsiB137
Lsi10G013580Silver-seed gourdcarlsiB279
Lsi10G013580Silver-seed gourdcarlsiB400
Lsi10G013580Silver-seed gourdcarlsiB910
Lsi10G013580Cucumber (Chinese Long) v3cuclsiB177
Lsi10G013580Cucumber (Chinese Long) v3cuclsiB270
Lsi10G013580Cucumber (Chinese Long) v3cuclsiB358
Lsi10G013580Watermelon (97103) v2lsiwmbB040
Lsi10G013580Watermelon (97103) v2lsiwmbB066
Lsi10G013580Watermelon (97103) v2lsiwmbB068
Lsi10G013580Wax gourdlsiwgoB059
Lsi10G013580Bottle gourd (USVL1VR-Ls)lsilsiB040
Lsi10G013580Bottle gourd (USVL1VR-Ls)lsilsiB026
Lsi10G013580Bottle gourd (USVL1VR-Ls)lsilsiB037
Lsi10G013580Bottle gourd (USVL1VR-Ls)lsilsiB043
Lsi10G013580Cucumber (Gy14) v1cgylsiB058
Lsi10G013580Cucumber (Gy14) v1cgylsiB272
Lsi10G013580Cucumber (Gy14) v1cgylsiB291
Lsi10G013580Cucurbita maxima (Rimu)cmalsiB196
Lsi10G013580Cucurbita maxima (Rimu)cmalsiB227
Lsi10G013580Cucurbita maxima (Rimu)cmalsiB398
Lsi10G013580Cucurbita maxima (Rimu)cmalsiB595
Lsi10G013580Cucurbita maxima (Rimu)cmalsiB630
Lsi10G013580Cucurbita maxima (Rimu)cmalsiB631
Lsi10G013580Cucurbita maxima (Rimu)cmalsiB745
Lsi10G013580Cucurbita maxima (Rimu)cmalsiB779
Lsi10G013580Cucurbita moschata (Rifu)cmolsiB186
Lsi10G013580Cucurbita moschata (Rifu)cmolsiB215
Lsi10G013580Cucurbita moschata (Rifu)cmolsiB383
Lsi10G013580Cucurbita moschata (Rifu)cmolsiB619
Lsi10G013580Cucurbita moschata (Rifu)cmolsiB578
Lsi10G013580Cucurbita moschata (Rifu)cmolsiB620
Lsi10G013580Cucurbita moschata (Rifu)cmolsiB738
Lsi10G013580Cucurbita moschata (Rifu)cmolsiB771
Lsi10G013580Cucurbita pepo (Zucchini)cpelsiB390
Lsi10G013580Cucurbita pepo (Zucchini)cpelsiB412
Lsi10G013580Cucurbita pepo (Zucchini)cpelsiB435
Lsi10G013580Cucurbita pepo (Zucchini)cpelsiB487
Lsi10G013580Cucurbita pepo (Zucchini)cpelsiB588
Lsi10G013580Cucurbita pepo (Zucchini)cpelsiB700
Lsi10G013580Wild cucumber (PI 183967)cpilsiB160
Lsi10G013580Wild cucumber (PI 183967)cpilsiB246
Lsi10G013580Wild cucumber (PI 183967)cpilsiB336
Lsi10G013580Wild cucumber (PI 183967)cpilsiB334
Lsi10G013580Cucumber (Chinese Long) v2culsiB161
Lsi10G013580Cucumber (Chinese Long) v2culsiB247
Lsi10G013580Cucumber (Chinese Long) v2culsiB334
Lsi10G013580Melon (DHL92) v3.5.1lsimeB070
Lsi10G013580Melon (DHL92) v3.5.1lsimeB042
Lsi10G013580Melon (DHL92) v3.5.1lsimeB075
Lsi10G013580Watermelon (Charleston Gray)lsiwcgB037
Lsi10G013580Watermelon (Charleston Gray)lsiwcgB050
Lsi10G013580Watermelon (Charleston Gray)lsiwcgB066
Lsi10G013580Watermelon (Charleston Gray)lsiwcgB067
Lsi10G013580Watermelon (Charleston Gray)lsiwcgB070
Lsi10G013580Watermelon (97103) v1lsiwmB048
Lsi10G013580Watermelon (97103) v1lsiwmB058
Lsi10G013580Watermelon (97103) v1lsiwmB063
Lsi10G013580Watermelon (97103) v1lsiwmB071
Lsi10G013580Cucumber (Gy14) v2cgyblsiB146
Lsi10G013580Cucumber (Gy14) v2cgyblsiB233
Lsi10G013580Cucumber (Gy14) v2cgyblsiB306
Lsi10G013580Melon (DHL92) v3.6.1lsimedB077
Lsi10G013580Melon (DHL92) v3.6.1lsimedB044
Lsi10G013580Melon (DHL92) v3.6.1lsimedB072