Lsi10G013090 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G013090
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDDB1-and CUL4-associated factor 8
Locationchr10 : 17287546 .. 17288975 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGACTGAAATCCATGTGGGAAAAATTTTCTCGGATGAATTCTTGTTACGAAGGGATGAACTGTGAGTTAGCTGAAATTTGCAATAGAGAAATCGGTATTGTTCGATCGAGAAACTTCTCTCGCAGATTCAGTGCTTCAGAGGTTCTTCAAATTTCTACGTTTAATTCTGATCCGATTTTTCCGTTTCATTCTGAATCCATTCAGTGATTGCCTGATTCCTTACTTTTGAATTTCGAGTAGTTAATTAGGTCACTTCTTCGTTCAATTTTCTTCTTAATTATGTTTCGCCTGTTAATGCAACATATCTTATTTACTGAACTCACTGCAGATTATTGTAAAGCAGCTGAATCTTGAAAAGAAGTTAAATGGTCACGATGGCTGTGTAAACGCCGTAGAGTTTAACTCCACTGGCGATCTTCTTGTGTCCGGTTCCGATGACTGCAAAGTCATATTGTGGGATTGGGCAAGAAATTCTGAGAGGTTTTCGTATCCTTCTGGTCACCTCGACAACATATTCCAAACCAAAATTATGCCGTTCACTGATGATCAGAAAATAGTAACTTCAGCTGCAGATGGAAAGGTGATTTTAAATAATATAAAGTGACATATCCTACCATTCATACCATTTTTTGTTGTTGCTTGTGTAGCTGTGTTCATTGGTTTTACCCTCTTTTTTTGCAAAAAATGATAAATTATTCGAGGGGCTGGAATAATGTGGTGGGCGGTTTTATACTGATTTTATACTGATAGATGTAAGAGGGATTTTGAAAATTTGGGGTTTAATGGTGCATACTAGGATTTAGAGGGGAGTCGCTACAATTGGGCGATTATTCGAGGGGATTAAACAATGTGGCAGACAGTTTTATACTGATAGATGTAAGAGGGATTCGAAAATTTGTGGTTTAATGGTGCATCCGAGGATTTAGAGGAGAGTCGCTACAATGTGCCAATTATTTGAGGGGCTGGAATAATGTGGTGGGCGGTTTTATACTGATAGATGTAAGAGGGATTTTGAAAATTTGTAGTTTAATGGTGCGTCCAAGGATTTAGAGGGGGATTGGCTACAATGTGGCAAGCACATTGAATAATTTTCCAGAAAAGGGGTTCTATTACTTTGGTTTTTGTTCATTTCATTTATTTGTGTGCCTTTGGCTTTGTTGTCTTGAGCTTCTCGATTCCCTTTCAACTTAATGGGCTCCGGTTGATGTTGGCTTATAAGATAGTTAAATAATGTGGATTGTTAAGCCTTTGTGAAAGAAATATTTGTAACTTATAATCTTGCCTGATCAGTCCTCAGTGATATGCAACTTTCTTTACCATTAGCTTCCATGCAAAAGTCACTATTATATCATGAATTACATTCTTTCTCATGTCTCCAGCATCGTTTTTTGGTCTATCTTTTGCCTATATTCCCACTCCAGGTTGAG

mRNA sequence

AAAAGACTGAAATCCATGTGGGAAAAATTTTCTCGGATGAATTCTTGTTACGAAGGGATGAACTGTGAGTTAGCTGAAATTTGCAATAGAGAAATCGGTATTGTTCGATCGAGAAACTTCTCTCGCAGATTCAGTGCTTCAGAGATTATTGTAAAGCAGCTGAATCTTGAAAAGAAGTTAAATGGTCACGATGGCTGTGTAAACGCCGTAGAGTTTAACTCCACTGGCGATCTTCTTGTGTCCGGTTCCGATGACTGCAAAGTCATATTGTGGGATTGGGCAAGAAATTCTGAGAGGTTTTCGTATCCTTCTGGTCACCTCGACAACATATTCCAAACCAAAATTATGCCGTTCACTGATGATCAGAAAATAGTAACTTCAGCTGCAGATGGAAAGGTGATTTTAAATAATATAAACTGTGTTCATTGGTTTTACCCTCTTTTTTTGCAAAAAATGATAAATTATTCGAGGGGCTGGAATAATGTGGTGGGCGTCCTCAGTGATATGCAACTTTCTTTACCATTAGCTTCCATGCAAAAGTCACTATTATATCATGAATTACATTCTTTCTCATGTCTCCAGCATCGTTTTTTGGTCTATCTTTTGCCTATATTCCCACTCCAGGTTGAG

Coding sequence (CDS)

ATGTGGGAAAAATTTTCTCGGATGAATTCTTGTTACGAAGGGATGAACTGTGAGTTAGCTGAAATTTGCAATAGAGAAATCGGTATTGTTCGATCGAGAAACTTCTCTCGCAGATTCAGTGCTTCAGAGATTATTGTAAAGCAGCTGAATCTTGAAAAGAAGTTAAATGGTCACGATGGCTGTGTAAACGCCGTAGAGTTTAACTCCACTGGCGATCTTCTTGTGTCCGGTTCCGATGACTGCAAAGTCATATTGTGGGATTGGGCAAGAAATTCTGAGAGGTTTTCGTATCCTTCTGGTCACCTCGACAACATATTCCAAACCAAAATTATGCCGTTCACTGATGATCAGAAAATAGTAACTTCAGCTGCAGATGGAAAGGTGATTTTAAATAATATAAACTGTGTTCATTGGTTTTACCCTCTTTTTTTGCAAAAAATGATAAATTATTCGAGGGGCTGGAATAATGTGGTGGGCGTCCTCAGTGATATGCAACTTTCTTTACCATTAGCTTCCATGCAAAAGTCACTATTATATCATGAATTACATTCTTTCTCATGTCTCCAGCATCGTTTTTTGGTCTATCTTTTGCCTATATTCCCACTCCAGGTTGAG

Protein sequence

MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILNNINCVHWFYPLFLQKMINYSRGWNNVVGVLSDMQLSLPLASMQKSLLYHELHSFSCLQHRFLVYLLPIFPLQVE
Homology
[Close]
BLAST of Lsi10G013090 vs. Swiss-Prot
Match: WDTC1_HUMAN (WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 6.5e-20
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1 

Query: 21  EICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDD 80
           ++  R+I    + +F RR+  ++  +++L LE +L GH GCVN +E+N  GDLL SGSDD
Sbjct: 9   DLIRRQIKERGALSFERRYHVTDPFIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDD 68

Query: 81  CKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI---NCVH 140
              I+WD   + +  S  +GH  NIF  K +P   D+ ++T AAD KV ++++     +H
Sbjct: 69  QHTIVWDPLHHKKLLSMHTGHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTVKETIH 128

[Close]
BLAST of Lsi10G013090 vs. Swiss-Prot
Match: WDTC1_MOUSE (WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.4e-20
Identity = 45/122 (36.89%), Postives = 73/122 (59.84%), Query Frame = 1 

Query: 21  EICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDD 80
           ++  R++    + +F RR+  ++  +++L LE +L GH GCVN +E+N  GDLL SGSDD
Sbjct: 9   DLIRRQVKERGALSFERRYHVTDPFIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDD 68

Query: 81  CKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI---NCVH 140
              I+WD   + +  S  +GH  NIF  K +P   D+ ++T AAD KV ++++     +H
Sbjct: 69  QHTIVWDPLHHKKLLSMHTGHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTVKETIH 128

[Close]
BLAST of Lsi10G013090 vs. Swiss-Prot
Match: DCAF8_RAT (DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-18
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 1 

Query: 19  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGS 78
           L  +  RE+G   S  F      + + V++  L+  L GH GCVN + FN  G  L SGS
Sbjct: 149 LPALRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGS 208

Query: 79  DDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKV 129
           DD KV++WDW R      + SGH  N+FQ K +P + D  +   A DG+V
Sbjct: 209 DDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQV 256

[Close]
BLAST of Lsi10G013090 vs. Swiss-Prot
Match: DCAF8_PONAB (DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-18
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 1 

Query: 19  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGS 78
           L  +  RE+G   S  F      + + V++  L+  L GH GCVN + FN  G  L SGS
Sbjct: 155 LPALRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGS 214

Query: 79  DDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKV 129
           DD KV++WDW R      + SGH  N+FQ K +P + D  +   A DG+V
Sbjct: 215 DDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMRARDGQV 262

[Close]
BLAST of Lsi10G013090 vs. Swiss-Prot
Match: DCAF8_MOUSE (DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-18
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 1 

Query: 19  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGS 78
           L  +  RE+G   S  F      + + V++  L+  L GH GCVN + FN  G  L SGS
Sbjct: 149 LPALRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGS 208

Query: 79  DDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKV 129
           DD KV++WDW R      + SGH  N+FQ K +P + D  +   A DG+V
Sbjct: 209 DDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQV 256

[Close]
BLAST of Lsi10G013090 vs. TrEMBL
Match: A0A0A0KC69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G295950 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.8e-59
Identity = 112/126 (88.89%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 8   MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEF 67
           MNSCY GMN + AEICNR+IGIV S NFSRRF ASEIIVKQLNLE KLNGHDGCVNAVEF
Sbjct: 1   MNSCYRGMNSDFAEICNRQIGIVPSTNFSRRFIASEIIVKQLNLEHKLNGHDGCVNAVEF 60

Query: 68  NSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 127
           NSTGDLLVSGSDDCKVILWDWARNS+RFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK
Sbjct: 61  NSTGDLLVSGSDDCKVILWDWARNSKRFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 120

Query: 128 VILNNI 134
           V L  +
Sbjct: 121 VRLGQV 126

[Close]
BLAST of Lsi10G013090 vs. TrEMBL
Match: M1CDP9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025376 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 78/123 (63.41%), Postives = 99/123 (80.49%), Query Frame = 1 

Query: 8   MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEF 67
           M   Y+G   +L E   REIG  + RNFSRR SASE +VK+L+L  KL GH+GCVN ++F
Sbjct: 1   MEKLYKG---DLMEFYKREIGFSKPRNFSRRISASEAMVKRLDLYGKLTGHEGCVNTIDF 60

Query: 68  NSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 127
           N+TGD+LVSGSDD +VILWDWA ++ +FSYPSGH+DNIFQTK MPFTDD+KI+T++ADG+
Sbjct: 61  NATGDVLVSGSDDRRVILWDWATSTSKFSYPSGHMDNIFQTKFMPFTDDRKIITASADGQ 120

Query: 128 VIL 131
           V L
Sbjct: 121 VRL 120

[Close]
BLAST of Lsi10G013090 vs. TrEMBL
Match: K4DAW1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-38
Identity = 75/113 (66.37%), Postives = 95/113 (84.07%), Query Frame = 1 

Query: 18  ELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSG 77
           +L E   REIG+ + RNFSRR SASE +VK+L+L  KL GH+GCVN ++FN+TGD+LVSG
Sbjct: 8   DLMEFYKREIGVSKPRNFSRRISASEAMVKRLDLYGKLTGHEGCVNTIDFNATGDVLVSG 67

Query: 78  SDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVIL 131
           SDD +VILWDWA  + +FSYPSGH+DNIFQTK MPFTDD+KI+T++ADG+V L
Sbjct: 68  SDDRRVILWDWATATSKFSYPSGHMDNIFQTKFMPFTDDRKIITASADGQVRL 120

[Close]
BLAST of Lsi10G013090 vs. TrEMBL
Match: W9SAN9_9ROSA (DDB1-and CUL4-associated factor 8 OS=Morus notabilis GN=L484_011214 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.8e-38
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 1 

Query: 20  AEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSD 79
           AEI  RE G+ R R F+RRFSASE+IVK++NL  KLNGH GCVN VEFNS+GDLLVSGSD
Sbjct: 8   AEIFGRETGLSRPRCFARRFSASEVIVKRINLCGKLNGHKGCVNTVEFNSSGDLLVSGSD 67

Query: 80  DCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILNNIN 135
           D +V+ WDWA  + R SYPSGH DNIFQ KIMPF+DD+KIVTS+ DG++ L  I+
Sbjct: 68  DRQVLFWDWATKTRRLSYPSGHSDNIFQAKIMPFSDDRKIVTSSGDGQIRLGQIS 122

[Close]
BLAST of Lsi10G013090 vs. TrEMBL
Match: B9T1Y8_RICCO (WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0624690 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.8e-38
Identity = 77/122 (63.11%), Postives = 96/122 (78.69%), Query Frame = 1 

Query: 12  YEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTG 71
           Y G+   L +I  RE+G+ + RNFS+R+SASE IVKQ++L KKL GH+GCVN+VEFN TG
Sbjct: 5   YRGIKDGLPQIYKRELGLFQPRNFSQRYSASEGIVKQISLYKKLLGHEGCVNSVEFNYTG 64

Query: 72  DLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILN 131
           DLLVSGSDD +V+ WDW   +   SYPSGH  NIFQTKIMPFTDD+KIVTS+ADG+V + 
Sbjct: 65  DLLVSGSDDKQVMFWDWVTGTRTISYPSGHFGNIFQTKIMPFTDDRKIVTSSADGQVRVG 124

Query: 132 NI 134
            +
Sbjct: 125 QV 126

[Close]
BLAST of Lsi10G013090 vs. TAIR10
Match: AT4G35140.1 (AT4G35140.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 5.8e-35
Identity = 67/128 (52.34%), Postives = 89/128 (69.53%), Query Frame = 1 

Query: 1   MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDG 60
           M EK  R  S + G++  + +   RE+G + SRNFS RFSASE +V +L + KKL  H G
Sbjct: 1   MSEKARRGRSNFNGLHHPVVDFWRREVGGISSRNFSNRFSASENLVLRLEIYKKLEKHKG 60

Query: 61  CVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIV 120
           CVN V FN+ GD+L+SGSDD +V+LWDW   + + S+ SGH +N+FQ K MPF+DD+ IV
Sbjct: 61  CVNTVSFNAEGDVLISGSDDRRVVLWDWQLGNVKLSFHSGHANNVFQAKFMPFSDDRTIV 120

Query: 121 TSAADGKV 129
           T AADG V
Sbjct: 121 TCAADGMV 128

[Close]
BLAST of Lsi10G013090 vs. TAIR10
Match: AT4G38480.1 (AT4G38480.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-33
Identity = 63/115 (54.78%), Postives = 87/115 (75.65%), Query Frame = 1 

Query: 19  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGS 78
           +  +  RE+G++ +R+FS RFSASE ++++L L+KKL+ H GCVN V FN+ GD+L+SGS
Sbjct: 15  VVNVWERELGLLPNRSFSNRFSASEDLLRRLGLDKKLDKHKGCVNTVSFNADGDILLSGS 74

Query: 79  DDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI 134
           DD +VILWDW   S + S+ SGH +NIFQ K MPF+DD+ IVTSAAD +V  + I
Sbjct: 75  DDRQVILWDWQTASVKLSFDSGHFNNIFQAKFMPFSDDRTIVTSAADKQVRYSKI 129

[Close]
BLAST of Lsi10G013090 vs. TAIR10
Match: AT3G45620.2 (AT3G45620.2 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 58/88 (65.91%), Postives = 73/88 (82.95%), Query Frame = 1 

Query: 46  VKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNI 105
           VK+L+L  KLNGH+GCVNAVEFNSTGD+LVSGSDD +++LW+W   S + SYPSGH +N+
Sbjct: 76  VKKLDLYGKLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSGSRKLSYPSGHCENV 135

Query: 106 FQTKIMPFTDDQKIVTSAADGKVILNNI 134
           FQTK +PFTDD+ I+TS ADG+V L  I
Sbjct: 136 FQTKFIPFTDDRTIITSGADGQVRLGQI 163

[Close]
BLAST of Lsi10G013090 vs. TAIR10
Match: AT5G10940.1 (AT5G10940.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-19
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 

Query: 32  SRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARN 91
           S    +R      +V++L+ E++L GH GCVNA+ +NS G LL+SGSDD ++ +W+++  
Sbjct: 23  SHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSR 82

Query: 92  SERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILNN 133
               S  +GH  NIF TK +P T D+ +V+ A D +V L N
Sbjct: 83  KLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVRLFN 123

[Close]
BLAST of Lsi10G013090 vs. TAIR10
Match: AT3G21540.1 (AT3G21540.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 27/74 (36.49%), Postives = 38/74 (51.35%), Query Frame = 1 

Query: 52  EKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIM 111
           E   N H G V A+ +N  G +L SGS D  +ILWD    S  F    GH D +  T ++
Sbjct: 99  EVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDVVGESGLFRL-RGHRDQV--TDLV 158

Query: 112 PFTDDQKIVTSAAD 126
                +K+V+S+ D
Sbjct: 159 FLDGGKKLVSSSKD 169

[Close]
BLAST of Lsi10G013090 vs. NCBI nr
Match: gi|449463637|ref|XP_004149538.1| (PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 5.4e-59
Identity = 112/126 (88.89%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 8   MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEF 67
           MNSCY GMN + AEICNR+IGIV S NFSRRF ASEIIVKQLNLE KLNGHDGCVNAVEF
Sbjct: 1   MNSCYRGMNSDFAEICNRQIGIVPSTNFSRRFIASEIIVKQLNLEHKLNGHDGCVNAVEF 60

Query: 68  NSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 127
           NSTGDLLVSGSDDCKVILWDWARNS+RFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK
Sbjct: 61  NSTGDLLVSGSDDCKVILWDWARNSKRFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 120

Query: 128 VILNNI 134
           V L  +
Sbjct: 121 VRLGQV 126

[Close]
BLAST of Lsi10G013090 vs. NCBI nr
Match: gi|778714378|ref|XP_011657223.1| (PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 5.4e-59
Identity = 112/126 (88.89%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 8   MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEF 67
           MNSCY GMN + AEICNR+IGIV S NFSRRF ASEIIVKQLNLE KLNGHDGCVNAVEF
Sbjct: 1   MNSCYRGMNSDFAEICNRQIGIVPSTNFSRRFIASEIIVKQLNLEHKLNGHDGCVNAVEF 60

Query: 68  NSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 127
           NSTGDLLVSGSDDCKVILWDWARNS+RFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK
Sbjct: 61  NSTGDLLVSGSDDCKVILWDWARNSKRFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 120

Query: 128 VILNNI 134
           V L  +
Sbjct: 121 VRLGQV 126

[Close]
BLAST of Lsi10G013090 vs. NCBI nr
Match: gi|659127782|ref|XP_008463887.1| (PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 110/126 (87.30%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 8   MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEF 67
           MNSCY+GMN + AEICNREIGIV SRNFSRRF ASE  VKQLNLE KLNGH+GCVNAVEF
Sbjct: 1   MNSCYQGMNSDFAEICNREIGIVPSRNFSRRFIASETNVKQLNLEHKLNGHNGCVNAVEF 60

Query: 68  NSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 127
           NSTGDLLVSGSDDCKVILWDWA NS+RFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK
Sbjct: 61  NSTGDLLVSGSDDCKVILWDWAINSKRFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 120

Query: 128 VILNNI 134
           V L  +
Sbjct: 121 VRLGQV 126

[Close]
BLAST of Lsi10G013090 vs. NCBI nr
Match: gi|659127778|ref|XP_008463885.1| (PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 110/126 (87.30%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 8   MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEF 67
           MNSCY+GMN + AEICNREIGIV SRNFSRRF ASE  VKQLNLE KLNGH+GCVNAVEF
Sbjct: 1   MNSCYQGMNSDFAEICNREIGIVPSRNFSRRFIASETNVKQLNLEHKLNGHNGCVNAVEF 60

Query: 68  NSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 127
           NSTGDLLVSGSDDCKVILWDWA NS+RFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK
Sbjct: 61  NSTGDLLVSGSDDCKVILWDWAINSKRFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 120

Query: 128 VILNNI 134
           V L  +
Sbjct: 121 VRLGQV 126

[Close]
BLAST of Lsi10G013090 vs. NCBI nr
Match: gi|565401839|ref|XP_006366400.1| (PREDICTED: DDB1- and CUL4-associated factor 8-like [Solanum tuberosum])

HSP 1 Score: 169.5 bits (428), Expect = 6.2e-39
Identity = 78/123 (63.41%), Postives = 99/123 (80.49%), Query Frame = 1 

Query: 8   MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEF 67
           M   Y+G   +L E   REIG  + RNFSRR SASE +VK+L+L  KL GH+GCVN ++F
Sbjct: 1   MEKLYKG---DLMEFYKREIGFSKPRNFSRRISASEAMVKRLDLYGKLTGHEGCVNTIDF 60

Query: 68  NSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGK 127
           N+TGD+LVSGSDD +VILWDWA ++ +FSYPSGH+DNIFQTK MPFTDD+KI+T++ADG+
Sbjct: 61  NATGDVLVSGSDDRRVILWDWATSTSKFSYPSGHMDNIFQTKFMPFTDDRKIITASADGQ 120

Query: 128 VIL 131
           V L
Sbjct: 121 VRL 120

The following BLAST results are available for this feature:
BLAST of Lsi10G013090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
WDTC1_HUMAN6.5e-2037.70WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2[more]
WDTC1_MOUSE8.4e-2036.89WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1[more]
DCAF8_RAT2.1e-1839.09DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=1 SV=1[more]
DCAF8_PONAB2.1e-1839.09DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1[more]
DCAF8_MOUSE2.1e-1839.09DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1[more]
BLAST of Lsi10G013090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC69_CUCSA3.8e-5988.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G295950 PE=4 SV=1[more]
M1CDP9_SOLTU4.3e-3963.41Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025376 PE=4 SV=1[more]
K4DAW1_SOLLC1.6e-3866.37Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
W9SAN9_9ROSA2.8e-3867.83DDB1-and CUL4-associated factor 8 OS=Morus notabilis GN=L484_011214 PE=4 SV=1[more]
B9T1Y8_RICCO4.8e-3863.11WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0624690 PE=4 SV=1[more]
BLAST of Lsi10G013090 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35140.15.8e-3552.34 Transducin/WD40 repeat-like superfamily protein[more]
AT4G38480.13.2e-3354.78 Transducin/WD40 repeat-like superfamily protein[more]
AT3G45620.22.3e-3165.91 Transducin/WD40 repeat-like superfamily protein[more]
AT5G10940.19.9e-1940.59 transducin family protein / WD-40 repeat family protein[more]
AT3G21540.11.1e-0636.49 transducin family protein / WD-40 repeat family protein[more]
BLAST of Lsi10G013090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463637|ref|XP_004149538.1|5.4e-5988.89PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Cucumis sativus][more]
gi|778714378|ref|XP_011657223.1|5.4e-5988.89PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Cucumis sativus][more]
gi|659127782|ref|XP_008463887.1|2.3e-5787.30PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Cucumis melo][more]
gi|659127778|ref|XP_008463885.1|2.3e-5787.30PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Cucumis melo][more]
gi|565401839|ref|XP_006366400.1|6.2e-3963.41PREDICTED: DDB1- and CUL4-associated factor 8-like [Solanum tuberosum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G013090.1Lsi10G013090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatPFAMPF00400WD40coord: 52..87
score: 1.
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 48..87
score: 4.5E-9coord: 90..132
score:
IPR001680WD40 repeatPROFILEPS50082WD_REPEATS_2coord: 55..87
score: 14
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 47..134
score: 3.7
IPR017986WD40-repeat-containing domainPROFILEPS50294WD_REPEATS_REGIONcoord: 55..96
score: 13
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 46..136
score: 1.1
NoneNo IPR availablePANTHERPTHR15574WD REPEAT DOMAIN-CONTAINING FAMILYcoord: 19..128
score: 4.4
NoneNo IPR availablePANTHERPTHR15574:SF41SUBFAMILY NOT NAMEDcoord: 19..128
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G013090Csa6G295950Cucumber (Chinese Long) v2culsiB408
Lsi10G013090CSPI06G16420Wild cucumber (PI 183967)cpilsiB410
Lsi10G013090Cucsa.051680Cucumber (Gy14) v1cgylsiB036
Lsi10G013090CmaCh20G004600Cucurbita maxima (Rimu)cmalsiB506
Lsi10G013090Cla013250Watermelon (97103) v1lsiwmB078
Lsi10G013090MELO3C025729Melon (DHL92) v3.5.1lsimeB055
Lsi10G013090ClCG02G020800Watermelon (Charleston Gray)lsiwcgB054
Lsi10G013090MELO3C025729.2Melon (DHL92) v3.6.1lsimedB055
Lsi10G013090Cla97C02G046830Watermelon (97103) v2lsiwmbB052
Lsi10G013090Bhi10G000494Wax gourdlsiwgoB068
Lsi10G013090Cp4.1LG16g05620Cucurbita pepo (Zucchini)cpelsiB219
Lsi10G013090CsGy6G015940Cucumber (Gy14) v2cgyblsiB373
Lsi10G013090Carg03267Silver-seed gourdcarlsiB303
Lsi10G013090CsaV3_6G021810Cucumber (Chinese Long) v3cuclsiB431
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G013090Bottle gourd (USVL1VR-Ls)lsilsiB040
Lsi10G013090Bottle gourd (USVL1VR-Ls)lsilsiB026
Lsi10G013090Bottle gourd (USVL1VR-Ls)lsilsiB043
Lsi10G013090Cucumber (Gy14) v1cgylsiB058
Lsi10G013090Cucumber (Gy14) v1cgylsiB272
Lsi10G013090Cucumber (Gy14) v1cgylsiB493
Lsi10G013090Cucurbita maxima (Rimu)cmalsiB196
Lsi10G013090Cucurbita maxima (Rimu)cmalsiB227
Lsi10G013090Cucurbita maxima (Rimu)cmalsiB398
Lsi10G013090Cucurbita maxima (Rimu)cmalsiB547
Lsi10G013090Cucurbita maxima (Rimu)cmalsiB630
Lsi10G013090Cucurbita maxima (Rimu)cmalsiB631
Lsi10G013090Cucurbita maxima (Rimu)cmalsiB744
Lsi10G013090Cucurbita maxima (Rimu)cmalsiB779
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB186
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB215
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB383
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB619
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB490
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB532
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB620
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB736
Lsi10G013090Cucurbita moschata (Rifu)cmolsiB771
Lsi10G013090Cucurbita pepo (Zucchini)cpelsiB435
Lsi10G013090Cucurbita pepo (Zucchini)cpelsiB487
Lsi10G013090Cucurbita pepo (Zucchini)cpelsiB588
Lsi10G013090Wild cucumber (PI 183967)cpilsiB160
Lsi10G013090Wild cucumber (PI 183967)cpilsiB246
Lsi10G013090Cucumber (Chinese Long) v2culsiB161
Lsi10G013090Cucumber (Chinese Long) v2culsiB334
Lsi10G013090Melon (DHL92) v3.5.1lsimeB070
Lsi10G013090Melon (DHL92) v3.5.1lsimeB042
Lsi10G013090Watermelon (Charleston Gray)lsiwcgB037
Lsi10G013090Watermelon (Charleston Gray)lsiwcgB067
Lsi10G013090Watermelon (97103) v1lsiwmB048
Lsi10G013090Watermelon (97103) v1lsiwmB063
Lsi10G013090Cucumber (Gy14) v2cgyblsiB006
Lsi10G013090Cucumber (Gy14) v2cgyblsiB146
Lsi10G013090Cucumber (Gy14) v2cgyblsiB233
Lsi10G013090Melon (DHL92) v3.6.1lsimedB045
Lsi10G013090Melon (DHL92) v3.6.1lsimedB072
Lsi10G013090Silver-seed gourdcarlsiB279
Lsi10G013090Silver-seed gourdcarlsiB400
Lsi10G013090Silver-seed gourdcarlsiB910
Lsi10G013090Cucumber (Chinese Long) v3cuclsiB177
Lsi10G013090Cucumber (Chinese Long) v3cuclsiB270
Lsi10G013090Watermelon (97103) v2lsiwmbB040
Lsi10G013090Watermelon (97103) v2lsiwmbB066
Lsi10G013090Wax gourdlsiwgoB059
Lsi10G013090Wax gourdlsiwgoB093