Lsi10G009160 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Antitermination NusB domain-containing protein
Location	chr10 : 13632658 .. 13643296 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGATTTTGTTATTTAGGACCAAAGAAATTCCAAGAGGGAAGAGCAGAGAAGGAAGGCTGAGTCCAATCTCACAGAAATGCATTTACCTCCGACTCCAATTCTCCTCTGAGCTGAAGAATTTTGATTTCTTCCACAATGTCTTTAGCTCCCCATTATCTGTATTCTTCCCATTCACTTCCCAAATTTTGCTTCAGCCCTAATTTTCATTCTTGTTCTTCGTCTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTTCCCCACGTAGAAGATTCCATGCCACACCTCGGCCCTCAAGCCTCGCTTCAGTTTTCTACTTCTTTTTCTGAAAATAGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCGTTGAAACAATTCCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTAAGATCCACCATTTCATTTTCACCTTTTTTCCCCCCCTAAACATCTGAATATCTCCTCTCTACCTTTTTACCTATTCACAAAGTTGGCCTACTCACCAAGAATATACTCTCACAATTTGTTTAATTTCTAGACTTGTAATCAATTCTAATTCTACTAGATTATTCAATCACAGGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGAGGTAAAAAAGATTGTGTTGGGGAAATAGATGTCACATATTTAACTCAAATATAAAACCAACGTCTTGCTTTGTTTGTTTGTACAATTCAGAATCGGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGCCCGCCAGTTTCCGTGGAAACAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGACGAAAAGGATTCTACAATTGGTAAACAATTATGTGACCTTCGTGTATATATATTATTTCTTCTTCTTAATTCACTCATTACTTTAGAATTGGGTCCTGAAAGAGACCGAACTTTTCATTGAAAAGATCAAAGGAGAGACTAATACTCAAAGGATACAAACTCCTGAAGGAGTAAAAAGGAAAAAAGAAAAGCAAAGAAATATAAAGATTCCACGAACCATAACAAATGATACACTTAAAAACTTAACAAAAAACTAATACATTAACATCAAGCATGGGTATGAACGTGGAGTCGCCCATAGAAGTTGGAGTAGATGTCCAAAAGCTCCAACGAGTGTTGTTGCAAAATCGCAATCTTCTGTTTGGGTAACTTTATTTGGCAAAGAAGCTTCTCCTTCTAAATTTAAACCAATTCTTCATCAAGATGAGCTATTCACGCTGATTAAATATCAGTACTGTATTAGGTTCCTCAGGAAATGTTGAAAATAAAACTCAAAGAGAGCCCTTGGAGATAAAATTCTCACATCCTTGAAAGGGATATATAGAGAGAGGGGAAATGCCAAAAAAACTCTTGAACTTCCAAAAAAAAAAAAAGTGCAGTATCTAATGAAAGAATCAAGAGGACTGCTAGTTCCAAGGCTCCCAAATGTCACTATGGATCAATGCAAGAGGGTTGAAAGATTTGCAGGGAACACTGGATAAATATTTCTGGTATGTTTGGAGAGTTGACACATTTTGCACAGAAAATGACTAGATTTTTTTTTATTAATGAATAGCCGAGGAAACAATTTGTTCAAGATACGAAAAATTCGGATGATCGAGTCGTAAGTGCCATAACATGACTTTGCTTTCACAAAACAATGATTTAGAACTGGAAGTAGACTCGGGAATAAGACTGCTAGAATTCAAAGAAGACTCACAACTAAGGCTGGAAGACGACGGAGGAACCAAGGGTTCTACCAAAAACAAAACTCAAAGGCTAAAATGTAACATTTGAACATTTAGAGACCAAAATGCAACCGAACCCAAAACTTAGGGACTAAAAGTGTATTTTTCACATGTTTTTATTATAGTTGTAAATGTAGTATTGTCGCCCTAGAGTTCGATTTTATTGCGTTTAGTATTAAAGTTCTGTTTTTCTGCATGACCGTATCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGCTGGTCTACAGCAAACTGATCTTACGGTAAATGTGGTTTATATTCCCCTGCCTTTGGCAGAGGAAGATAAGATGAAAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTTACTTCACGGATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGTCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGTAGAAAGCTTGTTTCTTTTTGCTATTTTATTTTCTGATTTTCTCCTTTTCTAGTTGGGAATATATGTTGAACCATTTATCATGTTTGTGTGGTTATAATACTCCTCGTGAACTGATATTTGCCTCATAATCATAGCATGTGTGTGCTTTTTACAAGACTTATAGAAATTTGAAAGGCTTTATACTATGGTGGCGACTGGCGAGTATGGAACCACAAACATGTGCAATATTTCAACCATGGATATTGTTGAATTTCTTACGTGTGTCTCTGAGCTTTAGTTATTGAAGGTTTGAGCTTAGTGGTAAATGCCCTTGGACTTAACAAACAGTTAGGGGGCGAAATAATCGTATCCATTTCTCTTGGACGTATTTGTTTAACATCAAATATTAGACCTGAATTTTCCAGATTTCCATTTTCAGGTGATTGAACTTTAACCAATGATGCTCTCTCCTCTCTCCTCTCCCCCTCCCTCCCTCCAGCCCACCCCTCTCCTTACCTAACGCCGACCACCATGCCTCAGCCACCGACAACCGCCCCTCCTTCCACCATCCGGTCCATCCATATTGACAGAAAACTTTTCTTTCTGTTTTCGCTAGTATCAAACAATGGAAAACAATTCAAACTATCAGAACAAAGGCACTCCAACATACACTCGATCTTTGTTTCAAGGAAATCTCTTGAATGGCTCGCCTCCTCATTCAACTCTCTTTTCAAAGAGCCGTGCAACCACAAATTCTTCAACAAGTTAAATGATAATGGTGATACATTTTGGCTGGAAAAGCGCAACAACAAGTATGGCTATTTTGCAGAGATTACCTTGCTGGAACAGTCAGGCCGCTGCACAACCATCCTCATCCCCGCTATAGAGGAAAAAAGAGGTTGGTTCTCTTTCTTCTCTTTGATATCTGACTACCCCAGGAAGCCCAACTCATCCTATACACCGCATCCCATCATTGCACAACAATCATACAGTACCGTTGTTCAATCAAGAGTCACCAACCTCCAATCCAAACAGGTTAGGACAAATACTTCTCCAATCCTCCCTCAATTTGATTGGAAGGCTATGGTAATTGTCTAGAGGTTCACGAGCAATGATTCTTGGCCGGATATCCGTGCAACTCTTCAAGCATCTCTCTCAATCAATTGTACTATTAACCCCATCTCTGATGACAAAGCATTGCTTCACGTGTACAGCACAAAAATAGCCCATGATTTGTGCGAAACATTGGATTGGACAATCATAGAACAAAGGAAACTCAAATTTCTCTCTCCAACCATTCCCTCATCATTCCAACAGCAAATGATAGCATCGAATGGAGGATGGATTGATCTTTATCACCTCCCAATCACCTCATGGACAGATGCAATTTTCAGATATATAGGAGATAAGTGTGGGGATATCTTCATCCCTCCAACCAAACAGAACGAGGTCTAAACCTCTCTTTTGCACGCATAAAGGTTCAAGCCAAAATCGAGGCTTCATTCCATGTGAATTGCGGCTTCCGGAGGAGCTGATCGGAGTAGCATCATCCATCACAATTCAGGCCGCCACTATCGGAACCCAGGGCCGGCGGAGAGAGGCTTCATCGACAAAAGGAAACAACAATAAAGAGGGTGCTGAAAAAGAGGATCTCATTGGTTCTCGGTTGATTGAAAAAGGTAAATCAAAAGATATTGAGTCAACTTCTTCTCTTTCCCCTTTTTTAGAAACGAATCCGATTCTCCATCTCTCTCTCCCTATTTAAATCAATCGGATGATTCTCCTATTTTTAAGGGGAATCTAAACCCGCCTCCCACCCTTTCAAATACTCATTCTGTAGACCCCACACCAGTTTTAATTATCCCTCCCAGCATAACGGAAAGCCAAGCCGCAAAGCCTAGCCCAGCCGCACACCTTAGCCCAGCCGCAAACCCTAGCCAAGAAAATCTGCCTGAGTCAACTCCACCTATCAATTCCCAAAATAAAAAATCGAGCCACACTAATTCGGCTTCCCCAACACCATCTTTCAATTTCCAAAACCAAAATTCGAGCCCCACTAGTTCGGCTTCACCATCGTTTTCACAACCCTCATTCTCCATGGTCACTTTTTGGGAGGGCCCTACTTCCCTCCACCATGGCACCTCTTTTTCCACATCAGCCAACAACCCTCCCCTTTGTCGGATCAGACACTGAAGGTTACCTCTCCAGCACCGCAAAAATTGTGGATTTTGCCTCCCTCCCTCTCGATGAGGCCATATTTGGTGATGATCCTGACGAATCCCACAGTCTACCAACTTGTTCCCTTCCCCCACTCCCATCCAACCTCAGTTCTCGTCAAGATCCTACAGCCCATATTGAGGACGCACTTTTATCCACCCCCTACCCTTTTATCCATCAGCAACCACCAAACTCTCCACCCTTGCCCATCAACCTTCGGGATTTAGCCTCTCTCCTATCCAACCATGGTTTATGTGTCATGGCTATACCAAATTCCATTCCACCTACCAAGCCAAAAAAAATCAGCAATACAACAGGCAAAAAACCCAAGCTGCAGAAAGAGCTACTAGGCCTTCAATCTTCGATTCACTATGACAAGACAACAACTTTGGCTATTCGGGAGGGTACCTCGAAAAATCAATGAAATTCCTTTCTTGGAACGTTCGGGGACTCAATTCCTGGAGGAAACGTACATTGGTTAAAAAGCTCATTCAGCAGCATAATCCAGGTATTGTTCTTTTGCAGGAAACAAAACTTTCTTCAGTGGATTCTTTCTTGATCAAATCCATTTGGAGCTCCGCTTATATTGGTTAAACTTCTTTAGACGCCATCGACTCGTCAGGGGGTATTCTTATTCTATGGAGTGAGCCAGATTACACTATTCTTGAGGTTATCCATGGACATTTTTCCGTTTCGGTTCATGTATCTTTGACAGATGGTTACTCATTCTGGATCACAGCAGTTTATGGCCCCTCTGATAATTTGTACAGAGTTGATTTTTGGCAAGAGCTTGACGACTTGGCTGGTTTGGGTGGAGATAATTGGGTTATTGGAGGAGATTTTAATGTTACTAGATGGTCTTGGGAGAAATCACATGACAGAACTATTTCTTCCAGCATGTGCGCCTTTAACCAATGGATTATCAATTATCAATTGTGTGATATCCCATTAACCAATGGCTATTTTACTTGGTCCAGTTCTGGTACTATACAATATTTGTCTCTCCTCGATCGGTTTTTAATTACGGAAAATTGCCTCCATAAATTTGGAATAGTTTCTCTTAAACGTCTGGATCGAACAACATCCGATCATTTCCCATTGGCCTTATCATCCGGAAATATTGTTTGGGGTCCGTGTCCTTTCAGATTTGAGAATTCGTGGCTGCAGGTTCCTTCATTCCGCACACTAGTGGAGGACTGGTGGAGACAACACCCCCTTACTGATTGGCCGGGGGCACAGTTTTATGATGAAATTGCAGGGATTGAAACTTGCTATTCGCGAATGGAGCACTAATCAACGCATGGAAGTTGCTAAGCTTCCTTCTCTTGTGAATCAGCTAAGGCAATTGGATGACATGGAAGATAGAGCCACTCTTACATTGGAACAGATTAACAGACGTCGTTTGCTTCGTGAACAGATTGAAAATTTGACTGTACAAGAACATATCCATTGGCAACAGAGATGCAAGCTTAAATGGCTTCTCGAAGGGGATGAAAACACCAGTTTTTTCATCGAATTGTTGCTACCCGTCGTTGTAAAAGCTCCATTTCTGAAATTTTATCTCGGGATGGCACAAGTCTGTTGACTGCGCAAGATATTAAGCATGAATTCCTGGCTTTTTACTCATCCCTCTTCACCAAAGATGGTAACCATCGTTTTATTCCAACCAATCTAGATTGGAGTCCTATTTCCTCTAATCAATCATCAGAGCTGGAGCGACCCTTCACGGAAGATGAGGTCTTCTCGGTAGTTTGCTCACTTGGTGCTAGTAAATCTCCTAGCCCCGACGGTTTCACAGCTGAGTTCTTCAAGTTTTTTTGGGCTACCATAAAAGATGATTTGATGTTATTGATTAATGATTTTTTCACAATGTTAAACTGAATGAGACCTATATCTGTCTGATCCCTAAGAAAATGGACTCTAGATCGGTCTCTGATTATCGACCGATAAGTCTCATCTCATGTGCATACAAGATTGTTGCTCGTGTTCTATCAAACAAGCTTAAAACGGTTCTTTCTTTTACCATTGCTGATAATCAGCTGGCTTTTCTTGCCAACAGGCAAATTCTGGATGCTTCTCTGATGGCCAATGAGCTCATTGATGACTGGACCTCTTTGCTTAAGGCTGGGGTTGTTCTGAAGTTTGATCTTGAGAAGGCTTTTGACATGGTGGATTGGGATTTTCTTGACTCAGTTCTCAAGGCTAAAGGCTTTGGCCTTCTTTGGCGTACTTGGAAACGAGGTTGTCTTACTAGTGCCAACTACTCCATCATCTTAAATGGTCGTCCTCGTGGCAAGATTATTCCATCTCGAGGTATAAGGCAGGGAGACCCTCTATCTCCCTTCTTATTTATTTTAGTTGTTGACTGTCTGAGTCGCCTTCTTGATCATAGTTCCACGTTGGGTTTCACGATTGCACATCCTGTTAGTCCTTCAACTGTTTCTCTGACTCATTTACAGTTTGCTGATGATACTCTGTTGTTTTCTATTGCTGAGCGATCTGCCATACAAAATCTATTTGATGTCGTCTGTATATTCGAATGTGCATCTGGTCTTAAAATTAATTTATCCAAGAGTGAGCTCCTTGGGATTGACGTTACTGAGGATGAATTGGATGGGTTGTTGTGTGTTTTTAGTTGTAGAAAGGGTTCCTGGCCGACTACCTATTTAGGCTTACCACTGGGTGGCAATTCCAATTCCGTTAATTTTTTGACAACCGGTGGTGGAGCGTTTCCAGCATAAACTTCATATTTGGAAATATGCATGTATTTCGAAAGGTGGTAGACATACGCTCATTCAGGCTACCCTCTCTAGTCTCCCTACATATTATTTGTCTTTGTTCAAGGCCCCAGCCTCAGTCATTAGTTGCCTTGATAAGATGGTTCGTGATTTTTTCTGGGAAGGTGCGCGAGGTGATGGTGGCATGCACAACGTGAATTGGGTGATTTCTCAGCGTCCTCGGCTTCAAGGCAGGATTGGTATCAGAAACTTTAAGCATCGTAATTCTGCCCTTCTTGCTAAATGGACTTGGCGTTTCTTAACTGAGCGATCCACCTTATGGAGGAAACTCATTGTGGCCAAGTATTATTCTTCCGGTTGCACATGGCCCACTTCAATTTCTCGTGGTTCTTCTAAATCTCCATGGCAATTTATCAGTCACTATATTGATTTGGTAGCCAATCGTATTGTTCGTCGTCTGGGTGATGGAGCTTCTACGTCATTTTGGCATGATTCTTGGCTTAGTTGTGGTGTTCTTGCTACAGAGTATCCACGACTTTATCGCATCACTCAACATCCAGAAACCACGGTTGCGAATAGTCTAGGTACCTTCTACTGGTGCATGGAATTTAAATTTACAGCGTAATCTTACTGAGTTAGAAATATCAGAATGGGCTTCTCTATCTTCATACTTGGCTTCCATCAGATTGCACAACTCTCCTGATGCTTGGCTATGGCCACTTGACCCTTCCTCCATATTCACTGTCAAATCTCTTATGGCTAATTTAGTGGGTGCATTGGATTGTGTTTTATCTGATCTTTACTATGAGATTTGGAAAGAAAGATATCCAAAAAAGATTAAAATTTTTCTATGGGAGCTTAGTTGGGGTGCCATAAATACCGCTGATCGCTTACAGCTCCGCTTCCCTTATTGGCCTCTCTCTCCATCTTGGTGTCATATGTGTTGTAGACATGATGAAACACCGATTCATCTATTTTTACACTGTTCCTTTGCTAACAGTTTTTGGAACACTGTTTTGCCTGCTTTTGGATGGACTTACACGCGCCCTAATAGTATCTCAGACGCATTGTCATCTTTGTTCGTGGGTCATCCTTTTGGTGGTACCAAGAAAGCAATTTGGTTGGCCCTCATTCGCACTTTCCTTTGGAGTCTTTGGAGTGAACAGAATAGGCGACTCTTTCATGATTCTCTATTCTTTTTTCATCGCTTTATGGAACTCGTTTTATCTACTGCTTTTTCTTGGTGTAAAACGAAGCATCCTTTCACTCATTATAGTTTATCTTTCTTAGTCAATAACTGGCTATCCCTCCTGTAATTTATATTCTATGGGGCTAATTATAGACCCTCATTATTATTATCAATAAACGTTCCTTTTACCAAAAAAAGAAAAAAACAAACAATTAGGGGGTATTTGGCCCAAGGAGTTGAGGGAAGTGGAGTTGTGAGCTCCATTCCTTGTTTGGTCTGAGGAGTTTGTGAATCTCATTACTAAAAAACATCAATTTTATACCTTCTGTGGGCCTCAGGAGTACAACTCCACTTGTTGTTCCAAATGCCTCCTTAATGGTTTCAAAATTTGTTGGATCTCCATTCCGGAATTTTATATCTTACAGGTTCTTAACAGAATTATATGGTCGTCCAAGTTTGAACCTAGCAAATATTAAGCTATTGAAGTTTTTATGGGGGTTAAAACAAAACCTTTAGCCTTCAGAACATGAATTTCGTCAAATAGTCATCTAGATATGCAACTAGGTTAAGCACTAAATAAATGTATTGTCATTCTATCAGATTTTCTTTTATGAAAAAATATACTTTTTAATAACCAAAGTAGTTGAAGCTTACAGTGTCTGTTTAATTCATATGCTCTTAACAGTTGTGAACCTAAATTTGAATGATGTTATCTTTTGTTAATTATTTTTTGTTTGAATTCAATGAGGAGATCAAACCATCTAATCTTTGAAATGGTTATTGATGGATTACCTATTGAGCTATATTTGGATTGACATGTTTTGTTAATCTATTAGATAAATCATTCCAGCCGTTATGTTACTTATTATTCAGACATTACAGTTGCACGAATCCAAAACAAAGATCATGTGCTTGGACTTGAACTTATTCAGCCTTTATGTTACTTATTATTTAAATATCTCATGCATTCGTATATATTTCAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGTAAATGTGTCTTGAGCTGTTTTACTTGAAGGTCAGAATTAACATCTCTTATATCTGTTGATATATGTCTAACATCAATCCTCTTTCTGTTTAAAAAAAAAAAATTGTTCTTGGTTATTGATGAAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGATGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAAGTCATGCTCGAGAGAAGATAGAAGTCTGTGCATGACCCTGAACTTTTGGGGTGCCTCAGGACCTTTGTAAGGATATCGAAGAATTTGACTCAACTCATGCTGTAGCTCAAGTAAGTGATTTGGGGGTACGTTTATTAAACTTGTTGCTGTCAACCGCAGCTAACGTGAAGTGATTTGAAGAATCTCATACTTGCCGCAAACCACAGCAAGAATTTATTTCCCTTTCCCCCCTGTAGGCGTGGATTTCTGTTATATCCATCTATTCAGAGTTGAGTAATGAGGTGCATGATGTGTGAGAGAATAAGTTGTCAAATTAATCTAGTACTGGAAATTTTGTATTGGAAACTTCAATCTATTTGGTATTGGAAACTTCAATCTATTTTTGCCATCCAACGTCTGATACTACTTAGGTAGCTATAGTGTTTTGTATCGGCAATAAAAGAAAGTACTGTGAATTTTTGTAGTTATTCTTTGCTTTTAAGTTTTAACTGCCTGTTATGTATATTTAGCCCCACTTTAAGGAGCTCTTATGTGTGTTGATATTTTAGAATTCACTATTCAAACCCTGTATTCGAGCAATTTTGCTGAGAGAATTTTGATTTTCATAAGTTTTCAGCAACGGAGTTGAATGTAGCAATGAATTAAGGTTTGTTCTTTCGAACAATTTTTTTAAGGACTATATAGAATTTATAAAATTAACTGAGTGTATCCACATTACATTTGGGAATCCCAGTGTGATAGTAAGGTAATAGAAACGTGTAAAAGTTTTCCAATTCTGGTGAACTTTTAATGTCTTCTAGATGTGTTTCTACAAGGAGC

mRNA sequence

ATCCGATTTTGTTATTTAGGACCAAAGAAATTCCAAGAGGGAAGAGCAGAGAAGGAAGGCTGAGTCCAATCTCACAGAAATGCATTTACCTCCGACTCCAATTCTCCTCTGAGCTGAAGAATTTTGATTTCTTCCACAATGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTTCCCCACGTAGAAGATTCCATGCCACACCTCGGCCCTCAAGCCTCGCTTCAGTTTTCTACTTCTTTTTCTGAAAATAGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCGTTGAAACAATTCCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGAGAATCGGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGCCCGCCAGTTTCCGTGGAAACAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGACGAAAAGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGCTGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGTCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGATGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAAGTCATGCTCGAGAGAAGATAGAAGTCTGTGCATGACCCTGAACTTTTGGGGTGCCTCAGGACCTTTGTAAGGATATCGAAGAATTTGACTCAACTCATGCTGTAGCTCAAGTAAGTGATTTGGGGGTACGTTTATTAAACTTGTTGCTGTCAACCGCAGCTAACGTGAAGTGATTTGAAGAATCTCATACTTGCCGCAAACCACAGCAAGAATTTATTTCCCTTTCCCCCCTGTAGGCGTGGATTTCTGTTATATCCATCTATTCAGAGTTGAGTAATGAGGTGCATGATGTGTGAGAGAATAAGTTGTCAAATTAATCTAGTACTGGAAATTTTGTATTGGAAACTTCAATCTATTTGGTATTGGAAACTTCAATCTATTTTTGCCATCCAACGTCTGATACTACTTAGGTAGCTATAGTGTTTTGTATCGGCAATAAAAGAAAGTACTGTGAATTTTTGTAGTTATTCTTTGCTTTTAAGTTTTAACTGCCTGTTATGTATATTTAGCCCCACTTTAAGGAGCTCTTATGTGTGTTGATATTTTAGAATTCACTATTCAAACCCTGTATTCGAGCAATTTTGCTGAGAGAATTTTGATTTTCATAAGTTTTCAGCAACGGAGTTGAATGTAGCAATGAATTAAGGTTTGTTCTTTCGAACAATTTTTTTAAGGACTATATAGAATTTATAAAATTAACTGAGTGTATCCACATTACATTTGGGAATCCCAGTGTGATAGTAAGGTAATAGAAACGTGTAAAAGTTTTCCAATTCTGGTGAACTTTTAATGTCTTCTAGATGTGTTTCTACAAGGAGC

Coding sequence (CDS)

ATGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTTCCCCACGTAGAAGATTCCATGCCACACCTCGGCCCTCAAGCCTCGCTTCAGTTTTCTACTTCTTTTTCTGAAAATAGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCGTTGAAACAATTCCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGAGAATCGGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGCCCGCCAGTTTCCGTGGAAACAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGACGAAAAGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGCTGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGTCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGATGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAAGTCATGCTCGAGAGAAGATAGAAGTCTGTGCATGA

Protein sequence

MPNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLGPQASLQFSTSFSENSVAEERNSIAVSSVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSSHAREKIEVCA

Homology

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BLAST of Lsi10G009160 vs. Swiss-Prot
Match: NUSB_PEPD6 (N utilization substance protein B homolog OS=Peptoclostridium difficile (strain 630) GN=nusB PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-06
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 194 KIEKVIPPTWKNKPAGRI--LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAP 253
           KI+++I    KN    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P
Sbjct: 94  KIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSP 153

Query: 254 RIINGCLRTFVKDI 266
           + ING L + V +I
Sbjct: 154 KFINGILGSVVDEI 167

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BLAST of Lsi10G009160 vs. TrEMBL
Match: A0A0A0KWZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 3.9e-139
Identity = 250/275 (90.91%), Postives = 263/275 (95.64%), Query Frame = 1


Query: 2   PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLGPQASLQFSTSFSENSVAEERNSIAVS 61
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP    QASL+ STSFSEN VAEER+SI++S
Sbjct: 104 PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 163

Query: 62  SVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 121
           S+E IPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS
Sbjct: 164 SIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 223

Query: 122 LMEYNHMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLL 181
           LMEYNHMSFGGPPV+VET+EEADELLRKDE+DSTIEAEILAAPPK+VYSKLILRFTRKLL
Sbjct: 224 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLL 283

Query: 182 VAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 241
           VAV DGWDSR LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL
Sbjct: 284 VAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 343

Query: 242 AKRFCDGAAPRIINGCLRTFVKDIKEIDSSHAREK 277
           AKRFCDGAAPRIINGCLRTFVKDIKEIDS  AREK
Sbjct: 344 AKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 378

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BLAST of Lsi10G009160 vs. TrEMBL
Match: W9RK01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 6.2e-97
Identity = 185/261 (70.88%), Postives = 211/261 (80.84%), Query Frame = 1


Query: 9   HISGVCRFPFRASSIVPHVEDS--MPHLGPQASLQFSTSFSENSVAEERNSIAVSSVETI 68
           H S    F    S  +PH   S  +  L P+ASL+ ST F E       NS + SS + +
Sbjct: 24  HFSPAFSFSLSFSLSLPHSSSSQSLSLLCPRASLRSSTFFVETPNTHNSNSTSSSS-DAL 83

Query: 69  PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYN 128
           PK D+ G+FCSPRAARELALSIVYA+CLEGSDPVRLFEKR+NARRE GYEFDK SL++YN
Sbjct: 84  PKTDRFGRFCSPRAARELALSIVYASCLEGSDPVRLFEKRINARREPGYEFDKESLLQYN 143

Query: 129 HMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLLVAVVD 188
           HMSFGGPPV+VET+EE +EL R D+K+S IEAE+L APPKLVYSKLILR TRKLLVAV D
Sbjct: 144 HMSFGGPPVTVETLEEEEELTRNDKKESDIEAEVLGAPPKLVYSKLILRLTRKLLVAVSD 203

Query: 189 GWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFC 248
            WDS V+ I+KV PP WKN+PAGRILE CILHLAMSEI+V+GTRHQIVINEAVDLAKRFC
Sbjct: 204 QWDSHVIVIDKVAPPNWKNEPAGRILEFCILHLAMSEISVLGTRHQIVINEAVDLAKRFC 263

Query: 249 DGAAPRIINGCLRTFVKDIKE 268
           DGAAPR+INGCLRTFVKDI+E
Sbjct: 264 DGAAPRVINGCLRTFVKDIEE 283

[Close]

BLAST of Lsi10G009160 vs. TrEMBL
Match: M5WJ39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.2e-95
Identity = 182/232 (78.45%), Postives = 204/232 (87.93%), Query Frame = 1


Query: 36  PQASLQFSTSFSENSVAEERNSIAVSSVETIPKVDKSGKFCSPRAARELALSIVYAACLE 95
           P+ SL+ ST F+ +   E+ NS    S E +PK+DKSG+FCSPRAARELALSIVYAACLE
Sbjct: 61  PRTSLRTST-FTLDEALEKPNS---DSREMLPKIDKSGRFCSPRAARELALSIVYAACLE 120

Query: 96  GSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVSVETVEEADELLRKDEKDST 155
           GSDPVRLFEKR+N RRE GYEFD+ SL+EYN MSFGGPPV+VETVEEADELLR DEK+S 
Sbjct: 121 GSDPVRLFEKRMNVRREPGYEFDRASLLEYNPMSFGGPPVTVETVEEADELLRNDEKESA 180

Query: 156 IEAEILAAPPKLVYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELC 215
           IEAE+LAAPPKLVYSKLILRFTRKLLVAV+D WDS VL I+KV PP WK++PAGRILELC
Sbjct: 181 IEAEVLAAPPKLVYSKLILRFTRKLLVAVMDKWDSHVLVIDKVAPPNWKDEPAGRILELC 240

Query: 216 ILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE 268
           ILHLAMSEITV+ TRH IVINEAVDLAKRFCDG+APR+INGCLRTFVK I+E
Sbjct: 241 ILHLAMSEITVLETRHPIVINEAVDLAKRFCDGSAPRVINGCLRTFVKGIEE 288

[Close]

BLAST of Lsi10G009160 vs. TrEMBL
Match: B9GXX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20820g PE=4 SV=2)

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 174/219 (79.45%), Postives = 194/219 (88.58%), Query Frame = 1


Query: 64  ETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLM 123
           E +PK+DKSG+FCSPRAARELAL I+YAACLEGSDP+RLFEKR+NARRE GYEFDK SL+
Sbjct: 90  EMMPKIDKSGRFCSPRAARELALLIIYAACLEGSDPIRLFEKRMNARREPGYEFDKASLL 149

Query: 124 EYNHMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLLVA 183
           EYNHMSFGGPPV+ ETVEEADEL   DEK+S IEAE+L+APPKLVYSKL+LRFTRKLLVA
Sbjct: 150 EYNHMSFGGPPVTTETVEEADELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVA 209

Query: 184 VVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAK 243
           VVD WDS VL I+KV PP WKN+PAGRILE CILH+AMSEITV+GTRHQIVINEAVDLAK
Sbjct: 210 VVDKWDSHVLVIDKVSPPNWKNEPAGRILEFCILHMAMSEITVLGTRHQIVINEAVDLAK 269

Query: 244 RFCDGAAPRIINGCLRTFVKDI---KEIDSSHAREKIEV 280
           RFCDGA PRIINGCLRTF+KD+       +S A EK+EV
Sbjct: 270 RFCDGAGPRIINGCLRTFLKDLSGASVAQTSDANEKVEV 308

[Close]

BLAST of Lsi10G009160 vs. TrEMBL
Match: A0A067EH40_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.3e-94
Identity = 176/246 (71.54%), Postives = 211/246 (85.77%), Query Frame = 1


Query: 36  PQASLQFSTSFSENSVAEERNSIAVSSV-ETIPKVDKSGKFCSPRAARELALSIVYAACL 95
           P  S   +    + ++ + R S+  SS  E +PK+DKSG+FCSPRAARELAL +VYAACL
Sbjct: 53  PNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACL 112

Query: 96  EGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVSVETVEEADELLRKDEKDS 155
           EGSDP+RLFEKRLN+RRE GYEFDK+SL+EYNHMSFGGPPV+ ETVEEADELLR DE++S
Sbjct: 113 EGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEES 172

Query: 156 TIEAEILAAPPKLVYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILEL 215
            IEAE+L+APPKLVYSKL+LRFTRKLLVAVVD WD+ V  I+KV+PP WK++PAGRILEL
Sbjct: 173 AIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILEL 232

Query: 216 CILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIK---EIDSS 275
            ILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV++++    I++S
Sbjct: 233 SILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEAS 292

Query: 276 HAREKI 278
            A +++
Sbjct: 293 KASKEV 298

[Close]

BLAST of Lsi10G009160 vs. TAIR10
Match: AT4G26370.1 (AT4G26370.1 antitermination NusB domain-containing protein)

HSP 1 Score: 325.1 bits (832), Expect = 4.3e-89
Identity = 158/210 (75.24%), Postives = 179/210 (85.24%), Query Frame = 1


Query: 66  IPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEY 125
           +PK+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFEKR+NARRE GYEFDK+SL+EY
Sbjct: 85  MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144

Query: 126 NHMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLLVAVV 185
           NHMSFGGPPV  ET EE DEL+R DEK+S IEAE+L+APPKLVYSKL+LRF +KLL AVV
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVV 204

Query: 186 DGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRF 245
           D WDS V+ IEK+ PP WK+ PAGRILE  ILHLAMSE+ V+ TRH IVINEAVDLAKRF
Sbjct: 205 DKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIVINEAVDLAKRF 264

Query: 246 CDGAAPRIINGCLRTFVKDIKEIDSSHARE 276
           CDG+APRIINGCLRTFVKD     +  A E
Sbjct: 265 CDGSAPRIINGCLRTFVKDRATTSTPQALE 294

[Close]

BLAST of Lsi10G009160 vs. NCBI nr
Match: gi|700198860|gb|KGN54018.1| (hypothetical protein Csa_4G268020 [Cucumis sativus])

HSP 1 Score: 502.3 bits (1292), Expect = 5.5e-139
Identity = 250/275 (90.91%), Postives = 263/275 (95.64%), Query Frame = 1


Query: 2   PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLGPQASLQFSTSFSENSVAEERNSIAVS 61
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP    QASL+ STSFSEN VAEER+SI++S
Sbjct: 104 PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 163

Query: 62  SVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 121
           S+E IPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS
Sbjct: 164 SIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 223

Query: 122 LMEYNHMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLL 181
           LMEYNHMSFGGPPV+VET+EEADELLRKDE+DSTIEAEILAAPPK+VYSKLILRFTRKLL
Sbjct: 224 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLL 283

Query: 182 VAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 241
           VAV DGWDSR LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL
Sbjct: 284 VAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 343

Query: 242 AKRFCDGAAPRIINGCLRTFVKDIKEIDSSHAREK 277
           AKRFCDGAAPRIINGCLRTFVKDIKEIDS  AREK
Sbjct: 344 AKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 378

[Close]

BLAST of Lsi10G009160 vs. NCBI nr
Match: gi|778692749|ref|XP_004149639.2| (PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus])

HSP 1 Score: 502.3 bits (1292), Expect = 5.5e-139
Identity = 250/275 (90.91%), Postives = 263/275 (95.64%), Query Frame = 1


Query: 2   PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLGPQASLQFSTSFSENSVAEERNSIAVS 61
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP    QASL+ STSFSEN VAEER+SI++S
Sbjct: 40  PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 99

Query: 62  SVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 121
           S+E IPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS
Sbjct: 100 SIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 159

Query: 122 LMEYNHMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLL 181
           LMEYNHMSFGGPPV+VET+EEADELLRKDE+DSTIEAEILAAPPK+VYSKLILRFTRKLL
Sbjct: 160 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLL 219

Query: 182 VAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 241
           VAV DGWDSR LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL
Sbjct: 220 VAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 279

Query: 242 AKRFCDGAAPRIINGCLRTFVKDIKEIDSSHAREK 277
           AKRFCDGAAPRIINGCLRTFVKDIKEIDS  AREK
Sbjct: 280 AKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 314

[Close]

BLAST of Lsi10G009160 vs. NCBI nr
Match: gi|659097953|ref|XP_008449897.1| (PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo])

HSP 1 Score: 501.1 bits (1289), Expect = 1.2e-138
Identity = 251/280 (89.64%), Postives = 267/280 (95.36%), Query Frame = 1


Query: 2   PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLGPQASLQFSTSFSENSVAEERNSIAVS 61
           PNFHFS HISG+C+FPF ASSIVPHV++SMP L  QASL+ STSF EN VAEER+SI+VS
Sbjct: 115 PNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVS 174

Query: 62  SVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 121
           S+ETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTS
Sbjct: 175 SIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTS 234

Query: 122 LMEYNHMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLL 181
           LMEYNHMSFGGPPV+VET+EEADELLRKDE+DSTIEAEILAAPPK+VYSKLILRFTRKLL
Sbjct: 235 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLL 294

Query: 182 VAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 241
           VAVVDGWD+R LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL
Sbjct: 295 VAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 354

Query: 242 AKRFCDGAAPRIINGCLRTFVKDIKEIDSSHAREKIEVCA 282
           AKRFCDGAAPRIINGCLRTFVKDIKE DS+ AREK EV A
Sbjct: 355 AKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVRA 394

[Close]

BLAST of Lsi10G009160 vs. NCBI nr
Match: gi|703124582|ref|XP_010103088.1| (hypothetical protein L484_005067 [Morus notabilis])

HSP 1 Score: 362.1 bits (928), Expect = 9.0e-97
Identity = 185/261 (70.88%), Postives = 211/261 (80.84%), Query Frame = 1


Query: 9   HISGVCRFPFRASSIVPHVEDS--MPHLGPQASLQFSTSFSENSVAEERNSIAVSSVETI 68
           H S    F    S  +PH   S  +  L P+ASL+ ST F E       NS + SS + +
Sbjct: 24  HFSPAFSFSLSFSLSLPHSSSSQSLSLLCPRASLRSSTFFVETPNTHNSNSTSSSS-DAL 83

Query: 69  PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYN 128
           PK D+ G+FCSPRAARELALSIVYA+CLEGSDPVRLFEKR+NARRE GYEFDK SL++YN
Sbjct: 84  PKTDRFGRFCSPRAARELALSIVYASCLEGSDPVRLFEKRINARREPGYEFDKESLLQYN 143

Query: 129 HMSFGGPPVSVETVEEADELLRKDEKDSTIEAEILAAPPKLVYSKLILRFTRKLLVAVVD 188
           HMSFGGPPV+VET+EE +EL R D+K+S IEAE+L APPKLVYSKLILR TRKLLVAV D
Sbjct: 144 HMSFGGPPVTVETLEEEEELTRNDKKESDIEAEVLGAPPKLVYSKLILRLTRKLLVAVSD 203

Query: 189 GWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFC 248
            WDS V+ I+KV PP WKN+PAGRILE CILHLAMSEI+V+GTRHQIVINEAVDLAKRFC
Sbjct: 204 QWDSHVIVIDKVAPPNWKNEPAGRILEFCILHLAMSEISVLGTRHQIVINEAVDLAKRFC 263

Query: 249 DGAAPRIINGCLRTFVKDIKE 268
           DGAAPR+INGCLRTFVKDI+E
Sbjct: 264 DGAAPRVINGCLRTFVKDIEE 283

[Close]

BLAST of Lsi10G009160 vs. NCBI nr
Match: gi|595826771|ref|XP_007205626.1| (hypothetical protein PRUPE_ppa009156mg [Prunus persica])

HSP 1 Score: 357.8 bits (917), Expect = 1.7e-95
Identity = 182/232 (78.45%), Postives = 204/232 (87.93%), Query Frame = 1


Query: 36  PQASLQFSTSFSENSVAEERNSIAVSSVETIPKVDKSGKFCSPRAARELALSIVYAACLE 95
           P+ SL+ ST F+ +   E+ NS    S E +PK+DKSG+FCSPRAARELALSIVYAACLE
Sbjct: 61  PRTSLRTST-FTLDEALEKPNS---DSREMLPKIDKSGRFCSPRAARELALSIVYAACLE 120

Query: 96  GSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVSVETVEEADELLRKDEKDST 155
           GSDPVRLFEKR+N RRE GYEFD+ SL+EYN MSFGGPPV+VETVEEADELLR DEK+S 
Sbjct: 121 GSDPVRLFEKRMNVRREPGYEFDRASLLEYNPMSFGGPPVTVETVEEADELLRNDEKESA 180

Query: 156 IEAEILAAPPKLVYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELC 215
           IEAE+LAAPPKLVYSKLILRFTRKLLVAV+D WDS VL I+KV PP WK++PAGRILELC
Sbjct: 181 IEAEVLAAPPKLVYSKLILRFTRKLLVAVMDKWDSHVLVIDKVAPPNWKDEPAGRILELC 240

Query: 216 ILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE 268
           ILHLAMSEITV+ TRH IVINEAVDLAKRFCDG+APR+INGCLRTFVK I+E
Sbjct: 241 ILHLAMSEITVLETRHPIVINEAVDLAKRFCDGSAPRVINGCLRTFVKGIEE 288

The following BLAST results are available for this feature:

BLAST of Lsi10G009160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUSB_PEPD6	2.5e-06	39.19	N utilization substance protein B homolog OS=Peptoclostridium difficile (strain ...	[more]

BLAST of Lsi10G009160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWZ5_CUCSA	3.9e-139	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1	[more]
W9RK01_9ROSA	6.2e-97	70.88	Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1	[more]
M5WJ39_PRUPE	1.2e-95	78.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1	[more]
B9GXX5_POPTR	2.0e-95	79.45	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20820g PE=4 SV=2	[more]
A0A067EH40_CITSI	1.3e-94	71.54	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1	[more]

BLAST of Lsi10G009160 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26370.1	4.3e-89	75.24	antitermination NusB domain-containing protein	[more]

BLAST of Lsi10G009160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198860\|gb\|KGN54018.1\|	5.5e-139	90.91	hypothetical protein Csa_4G268020 [Cucumis sativus]	[more]
gi\|778692749\|ref\|XP_004149639.2\|	5.5e-139	90.91	PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus]	[more]
gi\|659097953\|ref\|XP_008449897.1\|	1.2e-138	89.64	PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo]	[more]
gi\|703124582\|ref\|XP_010103088.1\|	9.0e-97	70.88	hypothetical protein L484_005067 [Morus notabilis]	[more]
gi\|595826771\|ref\|XP_007205626.1\|	1.7e-95	78.45	hypothetical protein PRUPE_ppa009156mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006353	DNA-templated transcription, termination
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011605	NusB_fam
IPR006027	NusB_RsmB_TIM44

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009160.1	Lsi10G009160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006027	NusB/RsmB/TIM44	GENE3D	G3DSA:1.10.940.10		coord: 176..267 score: 2.7E-23coord: 74..118 score: 2.7
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 177..263 score: 2.4
IPR006027	NusB/RsmB/TIM44	unknown	SSF48013	NusB-like	coord: 76..111 score: 8.0E-19coord: 173..266 score: 8.0
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 54..279 score: 4.4
None	No IPR available	PANTHER	PTHR11078:SF3	ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN	coord: 54..279 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G009160	Cucumber (Chinese Long) v3	cuclsiB271
Lsi10G009160	Watermelon (97103) v2	lsiwmbB052
Lsi10G009160	Wax gourd	lsiwgoB079
Lsi10G009160	Cucumber (Gy14) v1	cgylsiB245
Lsi10G009160	Cucurbita maxima (Rimu)	cmalsiB500
Lsi10G009160	Cucurbita maxima (Rimu)	cmalsiB540
Lsi10G009160	Cucurbita moschata (Rifu)	cmolsiB484
Lsi10G009160	Cucurbita moschata (Rifu)	cmolsiB525
Lsi10G009160	Cucurbita pepo (Zucchini)	cpelsiB227
Lsi10G009160	Cucurbita pepo (Zucchini)	cpelsiB598
Lsi10G009160	Wild cucumber (PI 183967)	cpilsiB245
Lsi10G009160	Cucumber (Chinese Long) v2	culsiB246
Lsi10G009160	Melon (DHL92) v3.5.1	lsimeB072
Lsi10G009160	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G009160	Watermelon (97103) v1	lsiwmB078
Lsi10G009160	Cucumber (Gy14) v2	cgyblsiB235
Lsi10G009160	Melon (DHL92) v3.6.1	lsimedB074
Lsi10G009160	Silver-seed gourd	carlsiB458