Lsi10G008810 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G008810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 13096354 .. 13099184 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTGAGAGAAGAAGTGGGCGGAGCAATAAGGCGGCAGTGGAGGTGGAGGTGGAGGTGGCGGTGGTGGTAGCCTTGGCCGTCCTGATGAGTGGGTCCGGGCGGTGGGCACCACAGGAAAAGGGATTGGGAAGGGGAAACAATGAGAAGCAGAGGAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAATGGATTGGGGGAAAGGAAAAGGAAAAGGAATGACATTTCTTCACTTTTGGGTTGACCAGGTGGAATTTGCAATTTCTGGGAGCGAAGTATTTGTGGGTTTGATCTGTGTGTGTCTGTGCTAAGAGATTGAAACCAATGGAGGGTCCTATCAAGCTGCCGATTCCGTAGCAACCGCCCTTTTTTCTTTCGTCTTCATCTTCTCTCTGCACCCGCCTCACCTTTCCAAGTTTATGCTTTTTCAAAACTATTTCCAAATTGTGCCACTTCCTTTTTTATTTTTTTATTATTATAATTATTATTTTGAAATCTATGCAACTTGGAAAAGTCATTTTAATGGTTGTTTCGTGCATTGGAAAATTAATGAATTTATGTTCTCTATTTTTTTTCCCTAACATTAGCAAAATTTATACTAATGGAGAAAATTGCAATATTTATTTAAATTTAGGTTACATTACAAATTTGGTCCTTATAATTTAGAGAAAATTAGAATTTAGTTCATATGATTTATAATTATAATTTAATCTATATAGTTCGATAAAACCTTCATTAATAGTTCGTATAAGAGAGACTGTTTATGAAAATTTTAGCAAACTATAGAGACTATTTATAAGGTTTTATCAAACTATAGGAACTAAATTCTAACTTCTTAAAACCATAGAAATTAAATTCTAACTTTCTCCAAATCATAAGGACTAAATTTATAATTAAACATTAAATTTAAGGTTCACATTGATGAAATTGAAAGTTTATGGATAAAATTAATACAACATGACAAGTATAGAGTCAAAATTGATTTTTTTTTTTTTTGTCAATTAACTATCACTAACAAAGAGACTAAGGTCACGTTTACTTTCCCGCAAACGCAATCAATCGTAATATGAAAAGTGGGGTCATTTAAATACGTAAACAGTATTATGTGAATTATGAATAATTCTTACTATTGCAACAATTTTGATTAAGAAGTAGTAAACATGACCTAACTTAAACTTAGGTTAAATTGTATAAAATACTCTTAAACTTTAGGGTTAGTTTAAATTATGTTTAACTTGAAATTTTAATTTATATCCTTGAACTTTAAAATTTTATTCCAAAAATCGATAGTTTGTTTTATTAGAATAAAATAAAATTTAAAATGAAAAATAATCTATTAAATTTGAAAGGCATTCGCAACCTCATTCATATTGATCAATAAGTAAACATTGATTATATACCTAAATATAATATATTAACAATAGCCAAAAAGAGCTTAGTTTAGTGGTAAATTGACATGCACTTCCTTTTCATCCAATGCATAGAATAATAATTAGTTTCTTTTTATCATTACTTAATATATATTCTTTTAGATCCTATCAACGTATTAAAGTTAAATACAACCACTAGATAAAAACTTTGAATACGTATACAGAAAAATTAATTAATTAAACTCATATATTTTAACCAAGAAAACATGCATTATTATTTCTAGTAGTACTACTGACTGTTAACACTATGTTGGCAAATATACTAACAGCCACACGCCTTGACTACAAAAATGAAAACTGAAAACCTATCCTAAAGAGAGAATGAATTATATATATGTGTGATACAAATTACAGAGTAGAGCCTAAAGATAAGAAAAGGGAGAAAAAGGCAGTAAAAGTGAAAATAATCATGGAACAGGAAAGGATTTATGGCTGCACATGCACTTGTAAGCCAAGGGACAAGTCTCTGAATCTTCAACTGAAGCACAAAAGAACCTAACCATGACAAGCCTGCAGGGGGAGCAGGACCCACAAGCATGAGAACAATCTGGTAATCTCGATCCTGCAATTTCCACTGTCTCTCCTCTCATTCGGGGCTTACCATTATTATTATCTGCATAATATATAATCAATTTTATGATATGGGTTTGTTTAAAAATGCAATTTTGTTTGACAAATGATTGGAAAAATGAGGTTATTTTAATAGAGCTGGTACGTACGAGTTGAGACTGAGAGTTGTCTGGCGGGCATGGCTGGTGGGAGTAGGAGGAGGAGGAGGAGGAGGAGGAGTACTACAGCAGCGACCTGCAGAACTAATAATGCCTTTGTGGATTTCATATTTTGAAATTATAATATCCCCAAGTGGCCGGTTATGAGGATGAAGAAAAATGGGAATATATAAAAGAAGATGGGCAGAGGAGAATGAAATATGAATATTGAAGCAAATCACAGGAAAGGATGGATGATGGAAGTGGATTAATTTGTGTATTGGAGAGAATCACATGAAGAAGGAAGAAGATGGTGTGTGTGTGGGGTTTGATTGCAGAAGTACTCCAATTTCTTGTGGTTCAATATGGAATATTAATTTTGGGTTGAACAAATACTATTTTGCATCAGCACTATTGCTCCATAGACATGAAAGTGGATGCAAGTTCCTGCCCTTGCCTTCTGTTGGCATTAATAATGCAGGGGGTCTTGTAAATTTTGTCACATCTTTTTCTAGGCTGTGTTCTAAAGTGTAATAAATTGTATGCGTTTGGCAGTAACAAGTCTAATGCTTTATGCTTTTTTTTTTTTTTTCCTTCAGTCCAGCCCAATGGCCCAATAACATGGTTGTGTGACACAAAAATAGGTATGAAAAGAATATAATTATATATATAAATGAGTACAACCGTATGTAA

mRNA sequence

ATGGCATCTGAGAGAAGAAGTGGGCGGAGCAATAAGGCGGCAGTGGAGGTGGAGGTGGAGGTGGCGGTGGTGGTAGCCTTGGCCGTCCTGATGAGTGGGTCCGGGCGGTGGGCACCACAGGAAAAGGGATTGGGAAGGGGAAACAATGAGAAGCAGAGGAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAATGGATTGGGGGAAAGGAAAAGGAAAAGGAATGACATTTCTTCACTTTTGGGTTGACCAGGTGGAATTTGCAATTTCTGGGAGCGAAATCCTATCAACAGTAGAGCCTAAAGATAAGAAAAGGGAGAAAAAGGCAGTAAAAGTGAAAATAATCATGGAACAGGAAAGGATTTATGGCTGCACATGCACTTGTTATTTTAATAGAGCTGGTACGTACGAGTTGAGACTGAGAGTTGTCTGGCGGGCATGGCTGCACTATTGCTCCATAGACATGAAAGTGGATGCAAGCTGTGTTCTAAAGTGTAATAAATTGTATGAAAAGAATATAATTATATATATAAATGAGTACAACCGTATGTAA

Coding sequence (CDS)

ATGGCATCTGAGAGAAGAAGTGGGCGGAGCAATAAGGCGGCAGTGGAGGTGGAGGTGGAGGTGGCGGTGGTGGTAGCCTTGGCCGTCCTGATGAGTGGGTCCGGGCGGTGGGCACCACAGGAAAAGGGATTGGGAAGGGGAAACAATGAGAAGCAGAGGAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAATGGATTGGGGGAAAGGAAAAGGAAAAGGAATGACATTTCTTCACTTTTGGGTTGACCAGGTGGAATTTGCAATTTCTGGGAGCGAAATCCTATCAACAGTAGAGCCTAAAGATAAGAAAAGGGAGAAAAAGGCAGTAAAAGTGAAAATAATCATGGAACAGGAAAGGATTTATGGCTGCACATGCACTTGTTATTTTAATAGAGCTGGTACGTACGAGTTGAGACTGAGAGTTGTCTGGCGGGCATGGCTGCACTATTGCTCCATAGACATGAAAGTGGATGCAAGCTGTGTTCTAAAGTGTAATAAATTGTATGAAAAGAATATAATTATATATATAAATGAGTACAACCGTATGTAA

Protein sequence

MASERRSGRSNKAAVEVEVEVAVVVALAVLMSGSGRWAPQEKGLGRGNNEKQRKRRRRRRRRRMDWGKGKGKGMTFLHFWVDQVEFAISGSEILSTVEPKDKKREKKAVKVKIIMEQERIYGCTCTCYFNRAGTYELRLRVVWRAWLHYCSIDMKVDASCVLKCNKLYEKNIIIYINEYNRM
Homology
[Close]
BLAST of Lsi10G008810 vs. TrEMBL
Match: A0A0A0KB46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128630 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 55/77 (71.43%), Postives = 57/77 (74.03%), Query Frame = 1 

Query: 1  MASERRSGRSNKAAVEVEVEVAVVVALAVLMSGSGRWAPQEKGLGRGNNEKQRKRRRRRR 60
          M SE RS      AV V V VAVV ALAVL SGSGRWAPQEKGLGRGN EKQR+RRR R 
Sbjct: 1  MTSEGRS------AVAVAVAVAVV-ALAVLKSGSGRWAPQEKGLGRGNKEKQRRRRRGRG 60

Query: 61 RRRMDWG-KGKGKGMTF 77
          R RM+ G  GKGKGMTF
Sbjct: 61 RGRMELGVYGKGKGMTF 70

[Close]
BLAST of Lsi10G008810 vs. NCBI nr
Match: gi|700191549|gb|KGN46753.1| (hypothetical protein Csa_6G128630 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 55/77 (71.43%), Postives = 57/77 (74.03%), Query Frame = 1 

Query: 1  MASERRSGRSNKAAVEVEVEVAVVVALAVLMSGSGRWAPQEKGLGRGNNEKQRKRRRRRR 60
          M SE RS      AV V V VAVV ALAVL SGSGRWAPQEKGLGRGN EKQR+RRR R 
Sbjct: 1  MTSEGRS------AVAVAVAVAVV-ALAVLKSGSGRWAPQEKGLGRGNKEKQRRRRRGRG 60

Query: 61 RRRMDWG-KGKGKGMTF 77
          R RM+ G  GKGKGMTF
Sbjct: 61 RGRMELGVYGKGKGMTF 70

The following BLAST results are available for this feature:
BLAST of Lsi10G008810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G008810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB46_CUCSA1.5e-1171.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128630 PE=4 SV=1[more]
BLAST of Lsi10G008810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G008810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191549|gb|KGN46753.1|2.2e-1171.43hypothetical protein Csa_6G128630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G008810.1Lsi10G008810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G008810Melon (DHL92) v3.6.1lsimedB050
Lsi10G008810Melon (DHL92) v3.6.1lsimedB062
Lsi10G008810Melon (DHL92) v3.6.1lsimedB070
Lsi10G008810Silver-seed gourdcarlsiB025
Lsi10G008810Silver-seed gourdcarlsiB583
Lsi10G008810Silver-seed gourdcarlsiB657
Lsi10G008810Silver-seed gourdcarlsiB794
Lsi10G008810Cucumber (Chinese Long) v3cuclsiB445
Lsi10G008810Cucumber (Chinese Long) v3cuclsiB522
Lsi10G008810Watermelon (97103) v2lsiwmbB045
Lsi10G008810Watermelon (97103) v2lsiwmbB060
Lsi10G008810Wax gourdlsiwgoB063
Lsi10G008810Wax gourdlsiwgoB081
Lsi10G008810Bottle gourd (USVL1VR-Ls)lsilsiB024
Lsi10G008810Cucumber (Gy14) v1cgylsiB020
Lsi10G008810Cucumber (Gy14) v1cgylsiB173
Lsi10G008810Cucumber (Gy14) v1cgylsiB235
Lsi10G008810Cucurbita maxima (Rimu)cmalsiB086
Lsi10G008810Cucurbita maxima (Rimu)cmalsiB468
Lsi10G008810Cucurbita maxima (Rimu)cmalsiB511
Lsi10G008810Cucurbita maxima (Rimu)cmalsiB550
Lsi10G008810Cucurbita moschata (Rifu)cmolsiB077
Lsi10G008810Cucurbita moschata (Rifu)cmolsiB453
Lsi10G008810Cucurbita moschata (Rifu)cmolsiB494
Lsi10G008810Cucurbita moschata (Rifu)cmolsiB535
Lsi10G008810Cucurbita pepo (Zucchini)cpelsiB196
Lsi10G008810Cucurbita pepo (Zucchini)cpelsiB521
Lsi10G008810Cucurbita pepo (Zucchini)cpelsiB592
Lsi10G008810Wild cucumber (PI 183967)cpilsiB421
Lsi10G008810Wild cucumber (PI 183967)cpilsiB500
Lsi10G008810Cucumber (Chinese Long) v2culsiB418
Lsi10G008810Cucumber (Chinese Long) v2culsiB490
Lsi10G008810Melon (DHL92) v3.5.1lsimeB048
Lsi10G008810Melon (DHL92) v3.5.1lsimeB066
Lsi10G008810Watermelon (Charleston Gray)lsiwcgB043
Lsi10G008810Watermelon (Charleston Gray)lsiwcgB046
Lsi10G008810Watermelon (Charleston Gray)lsiwcgB060
Lsi10G008810Watermelon (97103) v1lsiwmB061
Lsi10G008810Watermelon (97103) v1lsiwmB069
Lsi10G008810Watermelon (97103) v1lsiwmB075
Lsi10G008810Cucumber (Gy14) v2cgyblsiB457
Lsi10G008810Cucumber (Gy14) v2cgyblsiB383