Lsi10G008470 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G008470
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUPF0548 protein
Locationchr10 : 12422952 .. 12423252 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTGTTCGAAGGGCATTGCTGTTATGGATTAAGATGGTGTTCTTGTGTTGGTCTCACGCATCTCCTCAAGAGCAGAAGGCTTTCATTGAAAGGCAAGAACAATGAGAAAACTCTCATACATATAAGGTTTTTTTTCTAAGTGGAATGTTATATGATGTTCATCAATAAGACTTTGTTCCTTCAATTATAGCAGCAAGTTTAGAGGAGCTACTACCAATCCCAGTTCTTGTCTACAAGAAGACAAGGGGATGTCACAAGAAGGTTTTCTTCTCAACCATGCTCGTATTTGGTGGGTTCTG

mRNA sequence

TCTGTGTTCGAAGGGCATTGCTGTTATGGATTAAGATGGTGTTCTTGTGTTGGTCTCACGCATCTCCTCAAGAGCAGAAGGCTTTCATTGAAAGGCAAGAACAATGAGAAAACTCTCATACATATAAGCAGCAAGTTTAGAGGAGCTACTACCAATCCCAGTTCTTGTCTACAAGAAGACAAGGGGATGTCACAAGAAGGTTTTCTTCTCAACCATGCTCGTATTTGGTGGGTTCTG

Coding sequence (CDS)

TCTGTGTTCGAAGGGCATTGCTGTTATGGATTAAGATGGTGTTCTTGTGTTGGTCTCACGCATCTCCTCAAGAGCAGAAGGCTTTCATTGAAAGGCAAGAACAATGAGAAAACTCTCATACATATAAGCAGCAAGTTTAGAGGAGCTACTACCAATCCCAGTTCTTGTCTACAAGAAGACAAGGGGATGTCACAAGAAGGTTTTCTTCTCAACCATGCTCGTATTTGGTGGGTTCTG

Protein sequence

SVFEGHCCYGLRWCSCVGLTHLLKSRRLSLKGKNNEKTLIHISSKFRGATTNPSSCLQEDKGMSQEGFLLNHARIWWVL
Homology
[Close]
BLAST of Lsi10G008470 vs. TrEMBL
Match: A0A0A0KKV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507400 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 

Query: 43 SSKFRGATTNPSSCLQEDK-GMSQEGFLLNHARI 76
          +SKFRGAT NPSSCLQEDK G+SQEGFLLNHARI
Sbjct: 27 NSKFRGATANPSSCLQEDKGGISQEGFLLNHARI 60

[Close]
BLAST of Lsi10G008470 vs. NCBI nr
Match: gi|659080608|ref|XP_008440883.1| (PREDICTED: UPF0548 protein At2g17695 isoform X1 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 9.8e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 43 SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI 76
          SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Sbjct: 27 SSKFRGATANPSSCLQEDKGISQEGFLLNHARI 59

[Close]
BLAST of Lsi10G008470 vs. NCBI nr
Match: gi|659080614|ref|XP_008440887.1| (PREDICTED: UPF0548 protein At2g17695 isoform X2 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 9.8e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 43 SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI 76
          SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Sbjct: 27 SSKFRGATANPSSCLQEDKGISQEGFLLNHARI 59

[Close]
BLAST of Lsi10G008470 vs. NCBI nr
Match: gi|449434104|ref|XP_004134836.1| (PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 

Query: 43 SSKFRGATTNPSSCLQEDK-GMSQEGFLLNHARI 76
          +SKFRGAT NPSSCLQEDK G+SQEGFLLNHARI
Sbjct: 27 NSKFRGATANPSSCLQEDKGGISQEGFLLNHARI 60

The following BLAST results are available for this feature:
BLAST of Lsi10G008470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G008470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKV8_CUCSA3.8e-0788.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507400 PE=4 SV=1[more]
BLAST of Lsi10G008470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G008470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080608|ref|XP_008440883.1|9.8e-0993.94PREDICTED: UPF0548 protein At2g17695 isoform X1 [Cucumis melo][more]
gi|659080614|ref|XP_008440887.1|9.8e-0993.94PREDICTED: UPF0548 protein At2g17695 isoform X2 [Cucumis melo][more]
gi|449434104|ref|XP_004134836.1|5.4e-0788.24PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G008470.1Lsi10G008470.1mRNA