Lsi10G008210 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G008210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Conserved hypothetical plastid protein Ycf39
Location	chr10 : 11322226 .. 11324993 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATAGTACACGTGGAACGTATCATAATCCAATTGTGAGATCGACGTGGCAAGTTTCAGATCCTTTATTCCTGTTTTCTTCATCCTTTCTTCTCTATTGACAAACACTACACACAGACCAAAAAGATTCAACCATGGCGCTCAGGCTGCCCACACAGCTCGCGACACCTGGCAACCTCCACCGCCACGCCTTCTCCTCCCGCCGCTCCTTTGCGGCCTCCGACGCTCTCTTCTCTACGTTTCCTTCCTTCGCTTCATCTTCCTCCGGTAAGTGCTCACCTTCTTCTTCTCCAGTGCTCAACAACTATTTGATAGTTTCTTACTTCATGACTGGAGAGGATTTGTGATTCCGATTGCTTTTCTGTGTGTTTTTGTGATGGTATTGCGTCAGGGAGATCTTGTTTGCTACCGGTAGTCAGATGTACGGCTCAGCAGACTGGACCTGTGAATCTGGCGCCGGGGACACCGGTTAGGCCGACTAGCATTCTGGTGGTTGGTGCCACTGGAACCCTTGGTAGGCAGATCGTGAGGCGCGCGTTGGACGAAGGCTACGAGGTTCGTTGTCTTGTTAGGCCTCGACCGGCTCCTGCTGATTTTCTTCGCGATTGGGGCGCCATAGTCGTCAATGTGTGTATCATTCTCGATATCTATGTTTATATTATTCGTTTCCATTGATTATGATTCACTAGATACATTTTCAATTGTGTCAATGCTTTTGTGTTTAGTACTGACTAATGAGGCTGGAGCATTTTTATACGTATGGCAGGCAGATTTAAGTAAACCAGAAACTATCCCTGCAACATTGGTTGGGATTCACACTATCATAGATTGTGCTACAGGACGCCCGGAAGAGCCCATTAAGACGGTGATTTTCATATTGAGCTTTTGAATATCTTTTTTATTATTACGTTTTGTTCTAGCTTGCCATTTTCTGAATGTGCGAATAAGCCCATTGAAATCCAACTAACCGCTGTTGCCTTTTCCAATTTTTGATTNCGAAGAATTTTATTATGAATCATTCAATGCGACTTGCTATTTTCAATAAGTTCGTATCTTTGAGATTACTTTCTGTGGCAGAAACACGTTTTGCATAAGTCATTATCATGCTTAAAAGGTTCAAGCTTATTAAAGGTGGGTTGCAAGCTATGGTTATTAGTGACAAATGGACATGCTATCGAGAGGATGACATGACAAAAGCAAGATATGTGAAAGGATTGATCTTGGATGATGTTTGGTGGGATAAAGTTGATTACATCCTTTCCTTCACTTCACCTATATACGAAATGATTCGGATTTGTGATACTGATGCAACTACCCTTCATTTGGTTTATGACATGTGGGATACTATGATTGAAAAAGTGAAGACCGTGATATATAAGCATGAAGGAAAATGTGGAGATGAAAACTCTTCTTTTTATGATGTTGTCCATAATGTTCTCATTGATCGTTGGAACAAGAATAATACTTCGCTTCATTGTTTGGCCCATTCTTTGAACCCAAAGTACTTTATAATAATTACATCTTTCTATTCTAATCTTGATCTATTTATATTATAATTTAATTTCTAAAAGTTCAACATTCTTTTAACTTCTATCTAGGTACTATAGTGAGCAATGACTTAAGCAAGATTCTAATCAAGTACCTCCACATAAAGAGGTTGAAGTAACTCGTGAGAGAATGAAGTGCCTCAAGAGATACTTTCTTAATGCAAAAGATCGAGCCAAAGCAAACTTGGAGTTTGCTAGATTTGGGAAAAGATTTTAATGATGGTGATTCTATAACGGCTAGGTACAATGAGGATGCAAAGGATTGGTGGGCTATGCATGGTGTCTATGCACCATTGTTCCAATCAATTGTTTTTAAGGTACTAGGTCAGCCTTCCTCATCTTCATGTTGTGAAAGGAATTAGAGCACGTACTCATTTATTAACTCAGTTAGACGAAACAAGTTGTTGCCACAACGTGCAGATGATCTAGTATATATTCATAGTAATTTGCAACTTTTGTCAAGAAAAAGTCCAGAATATTTACCTGTACAGACGAAATTATGGGATATTGTTGGAGATTCTTTTGATTTTTTTAATGAAGCTGGGATGCTTGAAGTGGCTAATTTATCACTGCAGCTTTCAATGATGATGGTAGTGACAATGAGGCTAACAATTATGAAGCTAAAGATGAAGATGTTATGAAAGTTTGAGAATGATGTTTTATAGTTCGTGTTCGTGAAAGATGTGATGTAATCTCTATTTAGAATTTTGTATTTGTATTATAACTTTTTATTGAACTTAGACAACTAATATACTTTTTATTTATGTTTTAAAGAAGTGTTGTATGTTCAATATATATGATTAATTTATCTACAAGTATTATCACATATATTATTTTTTAAAAAATATAACGTGTCGTGTCCTAGATTCTAGAAATTGGTGTGTCGCCGTGTGTGTCGCGTGTCAATGTCCGTGCTTCCTAGATCTCACTCTCAAGCTCTCTCTTTCTCCATCTCTCACTTTCGGCTCTCTCCCTCTCTTCAGCCTCTCTCACACATTTATTCCAGCAGCCTTAGAGGCTGCGAACTTCACGACTGGCAGCGCCGGGTGGCGGTGAACTTCGTGTCCTCTGTACGACGAAGTTTTCCTTGACGACAGACTCGAGCATGCGGCATTCGACCGATTCGCCACAAAAGGACCTCATATCCAACGCTCCGCCATTGACAACAATGCATGAAGGTAGGTGGGAGGCGTTGGCGACGACCAGACGAAGTTTCTGGTGA

mRNA sequence

AGATAGTACACGTGGAACGTATCATAATCCAATTGTGAGATCGACGTGGCAAGTTTCAGATCCTTTATTCCTGTTTTCTTCATCCTTTCTTCTCTATTGACAAACACTACACACAGACCAAAAAGATTCAACCATGGCGCTCAGGCTGCCCACACAGCTCGCGACACCTGGCAACCTCCACCGCCACGCCTTCTCCTCCCGCCGCTCCTTTGCGGCCTCCGACGCTCTCTTCTCTACGTTTCCTTCCTTCGCTTCATCTTCCTCCGGGAGATCTTGTTTGCTACCGGTAGTCAGATGTACGGCTCAGCAGACTGGACCTGTGAATCTGGCGCCGGGGACACCGGTTAGGCCGACTAGCATTCTGGTGGTTGGTGCCACTGGAACCCTTGGTAGGCAGATCGTGAGGCGCGCGTTGGACGAAGGCTACGAGGTTCGTTGTCTTGTTAGGCCTCGACCGGCTCCTGCTGATTTTCTTCGCGATTGGGGCGCCATAGTCGTCAATGTGTCGCCGGGTGGCGGTGAACTTCGTGTCCTCTGTACGACGAAGTTTTCCTTGACGACAGACTCGAGCATGCGGCATTCGACCGATTCGCCACAAAAGGACCTCATATCCAACGCTCCGCCATTGACAACAATGCATGAAGGTAGGTGGGAGGCGTTGGCGACGACCAGACGAAGTTTCTGGTGA

Coding sequence (CDS)

ATGGCGCTCAGGCTGCCCACACAGCTCGCGACACCTGGCAACCTCCACCGCCACGCCTTCTCCTCCCGCCGCTCCTTTGCGGCCTCCGACGCTCTCTTCTCTACGTTTCCTTCCTTCGCTTCATCTTCCTCCGGGAGATCTTGTTTGCTACCGGTAGTCAGATGTACGGCTCAGCAGACTGGACCTGTGAATCTGGCGCCGGGGACACCGGTTAGGCCGACTAGCATTCTGGTGGTTGGTGCCACTGGAACCCTTGGTAGGCAGATCGTGAGGCGCGCGTTGGACGAAGGCTACGAGGTTCGTTGTCTTGTTAGGCCTCGACCGGCTCCTGCTGATTTTCTTCGCGATTGGGGCGCCATAGTCGTCAATGTGTCGCCGGGTGGCGGTGAACTTCGTGTCCTCTGTACGACGAAGTTTTCCTTGACGACAGACTCGAGCATGCGGCATTCGACCGATTCGCCACAAAAGGACCTCATATCCAACGCTCCGCCATTGACAACAATGCATGAAGGTAGGTGGGAGGCGTTGGCGACGACCAGACGAAGTTTCTGGTGA

Protein sequence

MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVVNVSPGGGELRVLCTTKFSLTTDSSMRHSTDSPQKDLISNAPPLTTMHEGRWEALATTRRSFW

Homology

[Close]

BLAST of Lsi10G008210 vs. Swiss-Prot
Match: YCF39_CYAPA (Uncharacterized protein ycf39 OS=Cyanophora paradoxa GN=ycf39 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.6e-12
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 75  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV--------NVSP 134
           SILV+GATGTLGRQIVR ALDEGY+VRCLVR     A FL++WGA ++        ++ P
Sbjct: 2   SILVIGATGTLGRQIVRSALDEGYQVRCLVR-NLRKAAFLKEWGAKLIWGDLSQPESLLP 61

Query: 135 GGGELRVLCTTKFSLTTDSSMRHSTDSPQKDLISNA 163
               +RV+  T  S  TD +  +  D   K  + +A
Sbjct: 62  ALTGIRVIIDTSTSRPTDPAGVYQVDLKGKKALIDA 96

[Close]

BLAST of Lsi10G008210 vs. Swiss-Prot
Match: YCF39_GUITH (Uncharacterized protein ycf39 OS=Guillardia theta GN=ycf39 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-11
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 75  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVVNVSPGGGELRVL 134
           S+LV+GATGTLGRQIVRRALDEGYEV CLVR     A FL++WGA ++       E    
Sbjct: 2   SLLVIGATGTLGRQIVRRALDEGYEVSCLVR-NLRKAYFLKEWGAELLYGDLSLPETLPT 61

Query: 135 CTTKFSLTTDSSMRHSTD 153
             TK +   D+S    +D
Sbjct: 62  NLTKITAIIDASTARPSD 78

[Close]

BLAST of Lsi10G008210 vs. Swiss-Prot
Match: YCF39_PORPU (Uncharacterized protein ycf39 OS=Porphyra purpurea GN=ycf39 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-10
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 75  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV 123
           ++LV+GATGTLGRQIVRRALDEGY V+C+VR     A FL++WGA +V
Sbjct: 2   TLLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSA-FLKEWGAELV 48

[Close]

BLAST of Lsi10G008210 vs. Swiss-Prot
Match: YCF39_PYRYE (Uncharacterized protein ycf39 OS=Pyropia yezoensis GN=ycf39 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-10
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 75  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV 123
           ++LV+GATGTLGRQIVRRALDEGY V+C+VR     A FL++WGA ++
Sbjct: 2   TLLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSA-FLKEWGAELI 48

[Close]

BLAST of Lsi10G008210 vs. Swiss-Prot
Match: YCF39_CYACA (Uncharacterized protein ycf39 OS=Cyanidium caldarium GN=ycf39 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-09
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1


Query: 75  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV 123
           S+LV+GAT TLGRQIV++AL +GYEV+CLVR     A FL+ WGAI+V
Sbjct: 2   SLLVIGATSTLGRQIVKKALIQGYEVKCLVR-NSKKAAFLKAWGAILV 48

[Close]

BLAST of Lsi10G008210 vs. TrEMBL
Match: A0A0A0KE85_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127390 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQT 60
           MALRLPTQL TP NLHR AFSSRRSFA SD LFS+FPSF SSSSGRSC LP+VRC AQQT
Sbjct: 1   MALRLPTQLVTPVNLHRDAFSSRRSFAPSDTLFSSFPSFTSSSSGRSCWLPLVRCAAQQT 60

Query: 61  GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI 120
           GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI
Sbjct: 61  GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI 120

Query: 121 VVN 124
           VVN
Sbjct: 121 VVN 123

[Close]

BLAST of Lsi10G008210 vs. TrEMBL
Match: M5VZ48_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006565mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-35
Identity = 94/139 (67.63%), Postives = 102/139 (73.38%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHRH----------AFSSRRSFAASDALFSTFPSFASSSSGRSCLL 60
           MA RLPTQLATPG LH H          +FS  R+ AA   L S   S +SSSS RS ++
Sbjct: 4   MAWRLPTQLATPGKLHHHNDSKTTAYQSSFSWCRTLAADHLLPS---SSSSSSSSRSTII 63

Query: 61  P-----VVRCTAQQ-TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLV 120
                 +VRCTA+   G VNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGY+VRCLV
Sbjct: 64  GTNTRRLVRCTARAGVGAVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLV 123

Query: 121 RPRPAPADFLRDWGAIVVN 124
           RPRPAPADFLRDWGA VVN
Sbjct: 124 RPRPAPADFLRDWGATVVN 139

[Close]

BLAST of Lsi10G008210 vs. TrEMBL
Match: W9RKH2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014376 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 91/134 (67.91%), Postives = 98/134 (73.13%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHR-------HAFSSRRSFAASDALFSTFPSFASSS---SGRSCLL 60
           MA RLP QLATPG LHR       H   S R   A +A+ S+  S  SSS   +G S   
Sbjct: 4   MACRLPAQLATPGKLHRSTKASTCHGALSFRRTLAPEAIGSSLSSAPSSSITLTGSSYKR 63

Query: 61  PVVRCTAQQT-GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPA 120
           P+V CT Q + G VNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGY+VRCLVRPRPA
Sbjct: 64  PLVTCTGQTSVGAVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPA 123

Query: 121 PADFLRDWGAIVVN 124
           PADFLRDWGA VVN
Sbjct: 124 PADFLRDWGATVVN 137

[Close]

BLAST of Lsi10G008210 vs. TrEMBL
Match: B9H1Q6_POPTR (Vestitone reductase-related family protein OS=Populus trichocarpa GN=POPTR_0004s19380g PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.1e-33
Identity = 84/135 (62.22%), Postives = 95/135 (70.37%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHRHA----------FSSRRSFAASD--ALFSTFPSFASSSSGRSC 60
           MA +LP QLATPG LH H            S RR+ +     +L ++FPS     +G+  
Sbjct: 1   MACKLPAQLATPGKLHHHCQFTITSAFIPLSWRRTLSPEPLLSLSTSFPS--GKCNGKQL 60

Query: 61  LLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRP 120
           +      TA+ TG VNL PGTPVRPTSILVVGATGTLGRQIVRRALDEGY+VRCLVRPRP
Sbjct: 61  VTCSAIGTAEATGAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRP 120

Query: 121 APADFLRDWGAIVVN 124
           APADFLRDWGAIVVN
Sbjct: 121 APADFLRDWGAIVVN 133

[Close]

BLAST of Lsi10G008210 vs. TrEMBL
Match: A0A0J8B5S9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g225860 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.1e-33
Identity = 81/130 (62.31%), Postives = 95/130 (73.08%), Query Frame = 1


Query: 1   MALRLPTQLATPGNL-HRHAFSSRRSFAA--SDALFSTF----PSFASSSSGRSCLLPVV 60
           MA RLP Q++TP  L H H  +   +  +  ++ +   F    PS  SS SGRS + P++
Sbjct: 1   MAGRLPAQVSTPPKLRHHHCHTGCPTILSWKTNLILQNFRVSSPSSLSSLSGRSYVRPLI 60

Query: 61  RCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADF 120
           +CTAQ     N APGTPVRPTSILVVG+TGTLGRQIVRRALDEGY+VRCLVRPRPAPADF
Sbjct: 61  KCTAQPAAATNYAPGTPVRPTSILVVGSTGTLGRQIVRRALDEGYDVRCLVRPRPAPADF 120

Query: 121 LRDWGAIVVN 124
           LRDWGA VVN
Sbjct: 121 LRDWGATVVN 130

[Close]

BLAST of Lsi10G008210 vs. TAIR10
Match: AT4G35250.1 (AT4G35250.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-35
Identity = 88/131 (67.18%), Postives = 95/131 (72.52%), Query Frame = 1


Query: 2   ALRLPTQLATPGNLHRHAFSS----RRSFAASDALFSTFPSFASSSSG-----RSCLLPV 61
           +LRLP QL T GNL  H  SS    R S+  S    +T P F SSSS      RS ++PV
Sbjct: 3   SLRLPAQLVTRGNLIHHNSSSSSSGRLSWRRSLTPENTIPLFPSSSSSSLNRERSIVVPV 62

Query: 62  VRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPAD 121
             C+A     VNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGY+VRCLVRPRPAPAD
Sbjct: 63  T-CSA---AAVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPAD 122

Query: 122 FLRDWGAIVVN 124
           FLRDWGA VVN
Sbjct: 123 FLRDWGATVVN 129

[Close]

BLAST of Lsi10G008210 vs. NCBI nr
Match: gi|449444370|ref|XP_004139948.1| (PREDICTED: uncharacterized protein ycf39 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.9e-55
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQT 60
           MALRLPTQL TP NLHR AFSSRRSFA SD LFS+FPSF SSSSGRSC LP+VRC AQQT
Sbjct: 1   MALRLPTQLVTPVNLHRDAFSSRRSFAPSDTLFSSFPSFTSSSSGRSCWLPLVRCAAQQT 60

Query: 61  GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI 120
           GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI
Sbjct: 61  GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI 120

Query: 121 VVN 124
           VVN
Sbjct: 121 VVN 123

[Close]

BLAST of Lsi10G008210 vs. NCBI nr
Match: gi|700191523|gb|KGN46727.1| (hypothetical protein Csa_6G127390 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.9e-55
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQT 60
           MALRLPTQL TP NLHR AFSSRRSFA SD LFS+FPSF SSSSGRSC LP+VRC AQQT
Sbjct: 1   MALRLPTQLVTPVNLHRDAFSSRRSFAPSDTLFSSFPSFTSSSSGRSCWLPLVRCAAQQT 60

Query: 61  GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI 120
           GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI
Sbjct: 61  GPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAI 120

Query: 121 VVN 124
           VVN
Sbjct: 121 VVN 123

[Close]

BLAST of Lsi10G008210 vs. NCBI nr
Match: gi|659094930|ref|XP_008448312.1| (PREDICTED: uncharacterized protein ycf39 isoform X2 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 9.5e-55
Identity = 115/124 (92.74%), Postives = 116/124 (93.55%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGR-SCLLPVVRCTAQQ 60
           MALRLPTQLATP NLHR AFSSRRSFA SD LFS+FPSF SSSS R SC LPVVRCTAQQ
Sbjct: 1   MALRLPTQLATPVNLHRDAFSSRRSFAPSDTLFSSFPSFVSSSSARRSCWLPVVRCTAQQ 60

Query: 61  TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGA 120
           TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGA
Sbjct: 61  TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGA 120

Query: 121 IVVN 124
           IVVN
Sbjct: 121 IVVN 124

[Close]

BLAST of Lsi10G008210 vs. NCBI nr
Match: gi|659094928|ref|XP_008448311.1| (PREDICTED: uncharacterized protein ycf39 isoform X1 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 9.5e-55
Identity = 115/124 (92.74%), Postives = 116/124 (93.55%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGR-SCLLPVVRCTAQQ 60
           MALRLPTQLATP NLHR AFSSRRSFA SD LFS+FPSF SSSS R SC LPVVRCTAQQ
Sbjct: 1   MALRLPTQLATPVNLHRDAFSSRRSFAPSDTLFSSFPSFVSSSSARRSCWLPVVRCTAQQ 60

Query: 61  TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGA 120
           TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGA
Sbjct: 61  TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGA 120

Query: 121 IVVN 124
           IVVN
Sbjct: 121 IVVN 124

[Close]

BLAST of Lsi10G008210 vs. NCBI nr
Match: gi|595795737|ref|XP_007201059.1| (hypothetical protein PRUPE_ppa006565mg [Prunus persica])

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-35
Identity = 94/139 (67.63%), Postives = 102/139 (73.38%), Query Frame = 1


Query: 1   MALRLPTQLATPGNLHRH----------AFSSRRSFAASDALFSTFPSFASSSSGRSCLL 60
           MA RLPTQLATPG LH H          +FS  R+ AA   L S   S +SSSS RS ++
Sbjct: 4   MAWRLPTQLATPGKLHHHNDSKTTAYQSSFSWCRTLAADHLLPS---SSSSSSSSRSTII 63

Query: 61  P-----VVRCTAQQ-TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLV 120
                 +VRCTA+   G VNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGY+VRCLV
Sbjct: 64  GTNTRRLVRCTARAGVGAVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLV 123

Query: 121 RPRPAPADFLRDWGAIVVN 124
           RPRPAPADFLRDWGA VVN
Sbjct: 124 RPRPAPADFLRDWGATVVN 139

The following BLAST results are available for this feature:

BLAST of Lsi10G008210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF39_CYAPA	7.6e-12	45.83	Uncharacterized protein ycf39 OS=Cyanophora paradoxa GN=ycf39 PE=3 SV=1	[more]
YCF39_GUITH	6.4e-11	51.28	Uncharacterized protein ycf39 OS=Guillardia theta GN=ycf39 PE=3 SV=1	[more]
YCF39_PORPU	5.4e-10	66.67	Uncharacterized protein ycf39 OS=Porphyra purpurea GN=ycf39 PE=3 SV=1	[more]
YCF39_PYRYE	7.1e-10	64.58	Uncharacterized protein ycf39 OS=Pyropia yezoensis GN=ycf39 PE=3 SV=1	[more]
YCF39_CYACA	3.5e-09	64.58	Uncharacterized protein ycf39 OS=Cyanidium caldarium GN=ycf39 PE=3 SV=1	[more]

BLAST of Lsi10G008210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE85_CUCSA	1.3e-55	91.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127390 PE=4 SV=1	[more]
M5VZ48_PRUPE	1.2e-35	67.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006565mg PE=4 SV=1	[more]
W9RKH2_9ROSA	1.5e-35	67.91	Uncharacterized protein OS=Morus notabilis GN=L484_014376 PE=4 SV=1	[more]
B9H1Q6_POPTR	7.1e-33	62.22	Vestitone reductase-related family protein OS=Populus trichocarpa GN=POPTR_0004s...	[more]
A0A0J8B5S9_BETVU	7.1e-33	62.31	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g225860 PE=4 S...	[more]

BLAST of Lsi10G008210 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35250.1	4.0e-35	67.18	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of Lsi10G008210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444370\|ref\|XP_004139948.1\|	1.9e-55	91.87	PREDICTED: uncharacterized protein ycf39 [Cucumis sativus]	[more]
gi\|700191523\|gb\|KGN46727.1\|	1.9e-55	91.87	hypothetical protein Csa_6G127390 [Cucumis sativus]	[more]
gi\|659094930\|ref\|XP_008448312.1\|	9.5e-55	92.74	PREDICTED: uncharacterized protein ycf39 isoform X2 [Cucumis melo]	[more]
gi\|659094928\|ref\|XP_008448311.1\|	9.5e-55	92.74	PREDICTED: uncharacterized protein ycf39 isoform X1 [Cucumis melo]	[more]
gi\|595795737\|ref\|XP_007201059.1\|	1.7e-35	67.63	hypothetical protein PRUPE_ppa006565mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom
IPR008030	NmrA-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009637	response to blue light
biological_process	GO:0010218	response to far red light
biological_process	GO:0010114	response to red light
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G008210.1	Lsi10G008210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008030	NmrA-like domain	PFAM	PF05368	NmrA	coord: 76..118 score: 1.
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 73..123 score: 2.7
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 76..123 score: 1.7
None	No IPR available	PANTHER	PTHR14194	NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED	coord: 1..123 score: 6.3
None	No IPR available	PANTHER	PTHR14194:SF81	SUBFAMILY NOT NAMED	coord: 1..123 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G008210	Csa6G127390	Cucumber (Chinese Long) v2	culsiB424
Lsi10G008210	CSPI06G10310	Wild cucumber (PI 183967)	cpilsiB426
Lsi10G008210	Cucsa.119260	Cucumber (Gy14) v1	cgylsiB175

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G008210	Cucumber (Chinese Long) v3	cuclsiB450
Lsi10G008210	Watermelon (97103) v2	lsiwmbB048
Lsi10G008210	Wax gourd	lsiwgoB076
Lsi10G008210	Cucumber (Gy14) v1	cgylsiB174
Lsi10G008210	Cucurbita pepo (Zucchini)	cpelsiB226
Lsi10G008210	Wild cucumber (PI 183967)	cpilsiB425
Lsi10G008210	Cucumber (Chinese Long) v2	culsiB423
Lsi10G008210	Watermelon (Charleston Gray)	lsiwcgB049
Lsi10G008210	Watermelon (97103) v1	lsiwmB076
Lsi10G008210	Cucumber (Gy14) v2	cgyblsiB387