Lsi10G008170 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G008170
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Hippocampus abundant transcript 1 protein
Location	chr10 : 11209635 .. 11214572 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGTCCGTCAGTTGTAATCGGCCGACGCTGGCAAGTAGTGGAGGCCCAATCGGTGGCAGGTGGTACCGTTTGTCAGCGACATTGGCGAGCCCAGTGAAGGTGGTCGACAGCGTGGGTGAAGAGCCACAACTGACATATTGTGCCGTTAGGTTACTTTCTTCCCATGGGTGCTGTAATACCATATCCGGTCGGGTCCTGGGTCACATAACCACCAAGCCGGAAATCCATCCTTGAAAACCAACACATTTTCTAATTTTGCAGGAGGATGGGCCTCACCCCAGCTGACAACGGTCTCCCTCGTCCTTTTCTCTTCTCTTCTTTTGGTTCTTGCAGCTACTGCACCATCGTTTCCTCCATAATAGTCGATGACCGTTTTTTGGAAATCCCGCCTTCGTCTTGCGAGATGCAAACTCAGCCTCTCCGAGAGCTAGCGTTGAACTCAAATAGGTCACAAATCTGCCTCTACCATACTTCTTCCATTTCCGGCGGTGACTCCCTCCGGCCCTTTTTGTATCCCCTTGGCGCTTTCGTGTGCGTTTCCATACGACGTCAACACTTCGATTCACTATTTTTCTCAACGACTTCTTGTTCTCTATGTTGTATATCTTTGGATAATTCAAATGCGTTTTACCTCGCTCTCTGCATCGTTGCTCATCCTTCTTCTTCTGTTTTTTTGCCCTCAACATTGCTGATAACTCCCCTTTCCTTCCTCTCCTCTGGTTCGATCGATGGACTCTCTCTCGCCTTTCAGGAAGTGTCTTCGAATAAGATCGGCGTCTTCCAGCCACTCTTCGTACCCGACCCGATAGTTTTCGAACCAGGTTCTTCTTCTCTGCTTTGATGGCTGCTAGTCTGCTTTCTTCTCTTTTGTCTCTTTGCAAGGATTCTAGGAGCCTTTGCTGCAATGCTCTCACATCTCTCTGTACCTCTAACAGTGCTTCATTCAATCGATCTGGATTCATTTCTAAAATTGATCTTCCAGGATTTGATGTTTCAGAATGAATAGCTTTGATACCAATTTATTAGGATATCTCCTAACAAGAGAACTCAAGAACACCAAAGAACAACCAAAGAACAATAAAAGATAAAATTATATTGCAGTATCAATAAAGAAACTACAATATAGCATAGCCTTTCGAGAGGGCTACTCTCTCCCACTATTTTCCAATTAGGAAATCACTACCAAAATTCTTCACACCTTCCTACCACTCCCACTCCTTTCATTTATAGCAATATTTAGTAACTAACTTCCAATTTAATTACTCTTATACCCCTTATTAATATCAAACTAATAAACTTATTTAGGTAACTAAGATATTAGCGCTGGTCTTTCAAACAACTGGTTTCATTCTCCTAGATTTATTGATATTTTTTTCTTTTTCAAACTGACCCCACGTGGGATTTCTATGTTATTTTTCTACATTTATTACATCTCTCTCCAACACAGCTAAATTAGAGCATAACTTAAATAGTTAAAGAACATACTGCCAACCAAAAGGTCAAAATTTCCAAACTTCACTCCTGCATGTTGTACTAAAAAAATTACGAAAAATAATAGTAATTTGTCTCTAACAAAGGACTAAAATAGTGAAGGAACTAATTTAAGGTTTAAGAACTTCCATTATCTTAGAATAGATCTTAACTTTACATCTTCCTATAAAAAGAATATTAGAACCAAAATGGAGACCAAGCTTTAATAATTAAAACCCAAATATCAGTCAGATATATATATATATCTCCACATTTCTCAGGATGTAAAACTGCAGATTATAGGGCTTGGAGCAATGGTGATGACACCAGTAATTGCGAATTTATCTGACAAATATGGAAGGAAAACAATGCTGACTCTCCCTATGACATTTTCAATCATACCACTCAGTAGGTTTACTGCTAAATCTCAGTTGAGTCATCATAAAATTAGATCACTAGTTATGACACAATATTTGAATGATATTGCAGCCATAATGGCATATAGAAGAACTACCAACTTCTTCTATGCATTCTACATCATGAAAACTCTCACAGACATGGTTTCAGAAGGCACCACAGTTTCCATTGCTCTTGCTTATGTGGTATTCAGCTTTACTTTCAACTATATGTACCCCAAAATTCTATCTCCCATCCCATCCTTCATATATAAGAAACTACCTGTCTCTTTATATTCTCCTCTGTTTCATTCTTAGGCAGACAAAACTTCAGAGGAACAAAGGATTTTAGCGTTTGGAATCCTATCTGGGGTCAAATCTGTAGGTTATGTATGTGGAACCTTTTCCGCTCAACTCCTTTCAATTGCTACAGTGTTTCAGGTTTTCCATGGCTTCTTCCTGCCTACATAATAAAGTATGCTTCCTTTTGGCTACAAATCCAAGTTATGCTTTCTTTGTATCCTTGTGCAGGTGGCAACTTTCATGTCTGTGCTTGCAGTAGTGTACATGAGGATTTTTCTCAAGGAAAGTATTTCGAATCATAATGAGTTGACTCAGCCAATCTTCGACGAAAACATAAGTGGTGATGATGAAAATGGGCCACAATTGACTACAAGAAACCAGTTATTGACAGCCACAGGGATCTCTTCTCTTAGAGATGTTATCTGCTTAATCACGAGTAGGTAATTTTGATGCCTTTTTCCAGTGGTTTCTGTCAGTTCTAAAGTAATTTTCTTTTCACCTCTAGTTTTCTTCCATTTTTCTCTTTTTTATGTTTTCCAACATGGCCAACTCTAAATGAAACAATATTCATCTATAGCACGACATTTTCACAAATAGCAACAGTTTCCTTCTTCAATAGTCTAGCAGAGAAGGGGATGCAAGCATCACTATCGGTACAATTCTAAGTCAAGTTTGAAAGCGTAGCTTCTATTTTAATTTGATTATTGACCTGTCATCGTGTTTCACTCGATGGGTTCATCAAAAGAATAATAAGTTTGAACAATTTTAGCACTTTTTCCAAACCCTCTATTTCCATAAACATCTCACCTTCAGGCTTCAACTTCAACCTCTACAGTTTTTCTTAAAGGCCCGTTTTCACTTCAACAAAAACCAGTTTCCTGACTTGATGATAATTGATGGTGTTGCTGGGGCCACTTCACAGGTATCCTTTACAATTATGAGCAATTACAATCCAGGGTATCTTTTGCAAGATTCATTATGGTACTTCTCTGTTTTGAACTTGTGCCCTTTTGCAGCTTCTTTTGATGCCCGTTTTGATACCAGCTATAAGACAGGAGAAGTTGCTTTCAATAGGGTTGTGGACAAGCTTTGTAAATGTAGGCACCTAACTCTCAACTCTTATATTCATTTGCCTCTCCCCATCCCCATGACGCTGATGATTACCCATTTCAATGCAGATGCTACTTTACAGCATTGCTTGGTCAGTTTGGGTAATTGAACTCCATTCGAGTAGCTAGATTCTTATCCTGTTCAAAACAAAAATAACCATTGTTCTGCTCTTATTGTAGATAATATAGTTATATCTTTCTTTCCTTTCCCCCCACTTATTTTATCAATTGAAACTTATGGAATATTCACAAGTACAGGCACTTGTTTGATTCTGTTTGGTCTTCCTGATCTGATAGTTATTCTCTATCTAACCTGTCAACTGCTGGTTCTTTAATAACCATAATGATTTTGACATTTGTAGGTTCCTTATGCTTCAAGAGCACTTTCAATTTTTACAGTTATTGTCAGTCCAATAGTAAGTTTTCCTTGTTTTCTTCATAAGATTGTCTTTGCTCATGAAAAAGCTCCGTGGCATTCACACAAATCTATGGCTTGCCCAGATATTCAACATTGCATCAAAACAAGTTGGACCGAGTGAGCAGGTCAGTACACTAAAAAGTAAAAATAAACTTACTACAATTTTGTTGGTTGAACCTCTGAAAGTTAAAACTTCTTCATCCACAAGGGGAAGGCCCAAGGATGCATCTCAGGCATTAATTCCCTTGCCAACATTGTATCTCCATTACTTTTCAGCCCCTTGATAGGTATATCAATTGTCAAGATAATTGTAAAATTTCTCCCCACAAAAGATACTCCATTTGTTGACTTCATCAAAATCTATTCAGCTCTTTTCCTCTCCAAGGATGCACCATTTGACTTCCCTGGCTTCAGTATTTTGTGCATTGGGCTTACTTCGGTAAGGATACTCAATACCAACCTATTTCCATCTTCCTATGTTTAGATTGTAATTAACTATATAAAGCCAGACAATATTCCATCAAAGAAGATTGCCAAACCATGATAGAAACAACACTGTGCACATCATCGGTCTTTCTTAGAAAGACTCAAAATTGAAGTGTTCATAGACTCCTATACTCCTAAAGAAACAAAATTGCATTGGTTGACCACATTCTAGAACTGACACACCATTTTGATTTGATTCTTTGGATACTGATTTCTCAACACCCAACCCCTTCATCCGATACTGCGATTTACTTCTAAAATGTCTATGAACTAACTCCAAATATTGGTCAACTTCTAAAAGGATTGATGGCTGTTACGTTAGTTCTTTAAGATTGTTCTTGTGTTTTTATGTTCACTTAAACATCTTTCTGTTTTGCAGTTGGTTGGGTTCACTCTAAGCCTGATGATCCGAGCAGATCCTGTCACTTCCATTCAGAAAACCAACAACTTAGGTCCCGTTTGATAACTATTTTATTTTTGGTTTTCTATTTTTGAAAACGTGCTTACAAAATAGGTAATGAAGCAAGAAAACTATAGGTAGAAATAGTGATTGTAAATCTAATTTTTAAAAACAAAAAAATAAAAAACAAAATAGTTATCAAATGGGGCTCAGGATTTAGGAAATCGAAATTCTTACTTGTAAAATACTAACCTTGAAGTGACCCAAAGATTACAGATTCCCTTGTATATTATAGCCTATAAGGAAACTCGAACTCAAACTCAAGGCAGCTTCAACAGAAAGTGCATTGTAA

mRNA sequence

ATGGTTGCGACATTGGCGAGCCCAGTGAAGGTGGTCGACAGCGTGGGTGAAGAGCCACAACTGACATATTGTGCCGTTAGGAGGATGGGCCTCACCCCAGCTGACAACGGTCTCCCTCGTCCTTTTCTCTTCTCTTCTTTTGGTTCTTGCAGCTACTGCACCATCGTTTCCTCCATAATAGTCGATGACCGTTTTTTGGAAATCCCGCCTTCGTCTTGCGAGATGCAAACTCAGCCTCTCCGAGAGCTAGCGTTGAACTCAAATAGGTCACAAATCTGCCTCTACCATACTTCTTCCATTTCCGGCGGTGACTCCCTCCGGCCCTTTTTGTATCCCCTTGGCGCTTTCGTGTGCGTTTCCATACGACGTCAACACTTCGATTCACTATTTTTCTCAACGACTTCTTGTTCTCTATGTTGTATATCTTTGGATAATTCAAATGCGTTTTACCTCGCTCTCTGCATCGTTGCTCATCCTTCTTCTTCTGTTTTTTTGCCCTCAACATTGCTGATAACTCCCCTTTCCTTCCTCTCCTCTGGTTCGATCGATGGACTCTCTCTCGCCTTTCAGGAAGTGTCTTCGAATAAGATCGGCGTCTTCCAGCCACTCTTCGTACCCGACCCGATAGTTTTCGAACCAGGATGTAAAACTGCAGATTATAGGGCTTGGAGCAATGGTGATGACACCACCATAATGGCATATAGAAGAACTACCAACTTCTTCTATGCATTCTACATCATGAAAACTCTCACAGACATGGTTTCAGAAGGCACCACAGTTTCCATTGCTCTTGCTTATGTGGCAGACAAAACTTCAGAGGAACAAAGGATTTTAGCGTTTGGAATCCTATCTGGGGTCAAATCTGTAGGTTATGTATGTGGAACCTTTTCCGCTCAACTCCTTTCAATTGCTACAGTGTTTCAGGTGGCAACTTTCATGTCTGTGCTTGCAGTAGTGTACATGAGGATTTTTCTCAAGGAAAGTATTTCGAATCATAATGAGTTGACTCAGCCAATCTTCGACGAAAACATAAGTGGTGATGATGAAAATGGGCCACAATTGACTACAAGAAACCAGTTATTGACAGCCACAGGGATCTCTTCTCTTAGAGATGTTATCTGCTTAATCACGAGTAGGCTTCAACTTCAACCTCTACAGTTTTTCTTAAAGGCCCGTTTTCACTTCAACAAAAACCAGTTTCCTGACTTGATGATAATTGATGGTGTTGCTGGGGCCACTTCACAGGTTCCTTATGCTTCAAGAGCACTTTCAATTTTTACAGTTATTGTCAGTCCAATACTCCGTGGCATTCACACAAATCTATGGCTTGCCCAGATATTCAACATTGCATCAAAACAAGTTGGACCGAGTGAGCAGCCTATAAGGAAACTCGAACTCAAACTCAAGGCAGCTTCAACAGAAAGTGCATTGTAA

Coding sequence (CDS)

ATGGTTGCGACATTGGCGAGCCCAGTGAAGGTGGTCGACAGCGTGGGTGAAGAGCCACAACTGACATATTGTGCCGTTAGGAGGATGGGCCTCACCCCAGCTGACAACGGTCTCCCTCGTCCTTTTCTCTTCTCTTCTTTTGGTTCTTGCAGCTACTGCACCATCGTTTCCTCCATAATAGTCGATGACCGTTTTTTGGAAATCCCGCCTTCGTCTTGCGAGATGCAAACTCAGCCTCTCCGAGAGCTAGCGTTGAACTCAAATAGGTCACAAATCTGCCTCTACCATACTTCTTCCATTTCCGGCGGTGACTCCCTCCGGCCCTTTTTGTATCCCCTTGGCGCTTTCGTGTGCGTTTCCATACGACGTCAACACTTCGATTCACTATTTTTCTCAACGACTTCTTGTTCTCTATGTTGTATATCTTTGGATAATTCAAATGCGTTTTACCTCGCTCTCTGCATCGTTGCTCATCCTTCTTCTTCTGTTTTTTTGCCCTCAACATTGCTGATAACTCCCCTTTCCTTCCTCTCCTCTGGTTCGATCGATGGACTCTCTCTCGCCTTTCAGGAAGTGTCTTCGAATAAGATCGGCGTCTTCCAGCCACTCTTCGTACCCGACCCGATAGTTTTCGAACCAGGATGTAAAACTGCAGATTATAGGGCTTGGAGCAATGGTGATGACACCACCATAATGGCATATAGAAGAACTACCAACTTCTTCTATGCATTCTACATCATGAAAACTCTCACAGACATGGTTTCAGAAGGCACCACAGTTTCCATTGCTCTTGCTTATGTGGCAGACAAAACTTCAGAGGAACAAAGGATTTTAGCGTTTGGAATCCTATCTGGGGTCAAATCTGTAGGTTATGTATGTGGAACCTTTTCCGCTCAACTCCTTTCAATTGCTACAGTGTTTCAGGTGGCAACTTTCATGTCTGTGCTTGCAGTAGTGTACATGAGGATTTTTCTCAAGGAAAGTATTTCGAATCATAATGAGTTGACTCAGCCAATCTTCGACGAAAACATAAGTGGTGATGATGAAAATGGGCCACAATTGACTACAAGAAACCAGTTATTGACAGCCACAGGGATCTCTTCTCTTAGAGATGTTATCTGCTTAATCACGAGTAGGCTTCAACTTCAACCTCTACAGTTTTTCTTAAAGGCCCGTTTTCACTTCAACAAAAACCAGTTTCCTGACTTGATGATAATTGATGGTGTTGCTGGGGCCACTTCACAGGTTCCTTATGCTTCAAGAGCACTTTCAATTTTTACAGTTATTGTCAGTCCAATACTCCGTGGCATTCACACAAATCTATGGCTTGCCCAGATATTCAACATTGCATCAAAACAAGTTGGACCGAGTGAGCAGCCTATAAGGAAACTCGAACTCAAACTCAAGGCAGCTTCAACAGAAAGTGCATTGTAA

Protein sequence

MVATLASPVKVVDSVGEEPQLTYCAVRRMGLTPADNGLPRPFLFSSFGSCSYCTIVSSIIVDDRFLEIPPSSCEMQTQPLRELALNSNRSQICLYHTSSISGGDSLRPFLYPLGAFVCVSIRRQHFDSLFFSTTSCSLCCISLDNSNAFYLALCIVAHPSSSVFLPSTLLITPLSFLSSGSIDGLSLAFQEVSSNKIGVFQPLFVPDPIVFEPGCKTADYRAWSNGDDTTIMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVGYVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISNHNELTQPIFDENISGDDENGPQLTTRNQLLTATGISSLRDVICLITSRLQLQPLQFFLKARFHFNKNQFPDLMIIDGVAGATSQVPYASRALSIFTVIVSPILRGIHTNLWLAQIFNIASKQVGPSEQPIRKLELKLKAASTESAL

Homology

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BLAST of Lsi10G008170 vs. TrEMBL
Match: W9QBZ4_9ROSA (Hippocampus abundant transcript 1 protein OS=Morus notabilis GN=L484_006072 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 109/259 (42.08%), Postives = 148/259 (57.14%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AY RTTNFFYA+Y+MKTLT MV EG+T  +ALAYVAD  S++ R  AFGI+SGV S  
Sbjct: 94  ILAYNRTTNFFYAYYVMKTLTAMVCEGSTNCLALAYVADHISDQGRASAFGIMSGVVSAA 153

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISNHNELTQPIFDENISGDDEN 350
           +VCGT +++ L  A+ FQVA   S+ A VYMR+FL+ES+ + + L QPI         + 
Sbjct: 154 FVCGTLASRFLPTASTFQVAALASMTAAVYMRVFLEESLPHEDSLRQPIL--------KG 213

Query: 351 GPQLTTRNQLLTATGIS----SLRDVICLITSRLQLQ------------------PLQFF 410
           GP +    +    T +S    +++D+I L+ S                        L +F
Sbjct: 214 GPDIEKNGEAPKRTQVSKTFPTMKDLISLLKSSKTFSEAATVSFFNSLAEGGFQASLMYF 273

Query: 411 LKARFHFNKNQFPDLMIIDGVAGATSQVPY--------ASRALSIFTVIVSPILRGIHTN 460
           LKARFHFNK+QF DLM+I GVAGA SQ+ +            L    + V  I   +++ 
Sbjct: 274 LKARFHFNKDQFADLMLILGVAGAISQLLFLPLLAPIVGETKLLCIGLFVGCINTFVYSI 333

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BLAST of Lsi10G008170 vs. TrEMBL
Match: A0A067FLC9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011514mg PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38
Identity = 109/275 (39.64%), Postives = 152/275 (55.27%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AYRR+ +FFYA+Y ++TLT MV EG+   +ALAYVAD  SE QR  AFGIL GV S  
Sbjct: 97  ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISN--HNELTQPIFDENISGDD 350
           +VCGT +A+ LS  + FQ AT +S+LA  YMR+FLK+ + N   ++LT+PI  E   G +
Sbjct: 157 FVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVN 216

Query: 351 ENGPQLTTRNQLLTATGISSLRDVICLITSRLQLQ------------------PLQFFLK 410
           +N  +  +  ++     I S+RD+ICL+ S + L                      +FLK
Sbjct: 217 QN--ESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK 276

Query: 411 ARFHFNKNQFPDLMIIDGVAGATSQV-------PYASRA----LSIFTVIVSPILRGIHT 460
           A+FHFNKNQF DLM+I G+AG  SQ+       P    A    L +F   ++  +  I  
Sbjct: 277 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW 336

[Close]

BLAST of Lsi10G008170 vs. TrEMBL
Match: A0A067FYF0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011514mg PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38
Identity = 109/275 (39.64%), Postives = 152/275 (55.27%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AYRR+ +FFYA+Y ++TLT MV EG+   +ALAYVAD  SE QR  AFGIL GV S  
Sbjct: 97  ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISN--HNELTQPIFDENISGDD 350
           +VCGT +A+ LS  + FQ AT +S+LA  YMR+FLK+ + N   ++LT+PI  E   G +
Sbjct: 157 FVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVN 216

Query: 351 ENGPQLTTRNQLLTATGISSLRDVICLITSRLQLQ------------------PLQFFLK 410
           +N  +  +  ++     I S+RD+ICL+ S + L                      +FLK
Sbjct: 217 QN--ESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK 276

Query: 411 ARFHFNKNQFPDLMIIDGVAGATSQV-------PYASRA----LSIFTVIVSPILRGIHT 460
           A+FHFNKNQF DLM+I G+AG  SQ+       P    A    L +F   ++  +  I  
Sbjct: 277 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW 336

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BLAST of Lsi10G008170 vs. TrEMBL
Match: V4RN73_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028321mg PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38
Identity = 109/275 (39.64%), Postives = 152/275 (55.27%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AYRR+ +FFYA+Y ++TLT MV EG+   +ALAYVAD  SE QR  AFGIL GV S  
Sbjct: 97  ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISN--HNELTQPIFDENISGDD 350
           +VCGT +A+ LS  + FQ AT +S+LA  YMR+FLK+ + N   ++LT+PI  E   G +
Sbjct: 157 FVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVN 216

Query: 351 ENGPQLTTRNQLLTATGISSLRDVICLITSRLQLQ------------------PLQFFLK 410
           +N  +  +  ++     I S+RD+ICL+ S + L                      +FLK
Sbjct: 217 QN--ESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK 276

Query: 411 ARFHFNKNQFPDLMIIDGVAGATSQV-------PYASRA----LSIFTVIVSPILRGIHT 460
           A+FHFNKNQF DLM+I G+AG  SQ+       P    A    L +F   ++  +  I  
Sbjct: 277 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW 336

[Close]

BLAST of Lsi10G008170 vs. TrEMBL
Match: A0A067KAP4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13068 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 113/291 (38.83%), Postives = 162/291 (55.67%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AY   TNFFY++Y+++TLT MVSE +   +A AYVAD  SE QR  AFGI SG+ S  
Sbjct: 95  ILAYSSETNFFYSYYVLRTLTAMVSESSIQCLAFAYVADNISERQRASAFGIQSGIFSSS 154

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISNHNELTQPIF-----DENIS 350
           +V GT +A+LLSI+  FQVA  +S++A VYMRIFLK+ +S++  L++PI      +ENI 
Sbjct: 155 FVAGTLAARLLSISLTFQVAALVSMVATVYMRIFLKDRVSDNENLSEPILKSSGPEENIH 214

Query: 351 GDDENGPQLTTR-NQLLTATGISSLRDVICLI---TSRLQLQPLQFF------------- 410
            D+ +   LTTR + + ++  I ++ D+ICL+   ++  Q+  + FF             
Sbjct: 215 QDNAHTNNLTTRVSPVSSSKKILTVGDLICLLKRSSTFSQVSVVSFFNSLAEGGLLASFM 274

Query: 411 --LKARFHFNKNQFPDLMIIDGVAGATSQVPY---------------------------- 460
             LKARFHF+KNQ+ DL+++ GVAG  SQ+ +                            
Sbjct: 275 YYLKARFHFSKNQYADLLLLTGVAGMASQLIFMPLLVPIISEEKLLSIGLFMGFINMLLC 334

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BLAST of Lsi10G008170 vs. TAIR10
Match: AT2G16980.2 (AT2G16980.2 Major facilitator superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-27
Identity = 99/289 (34.26%), Postives = 141/289 (48.79%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+ YRR TNFFYAFY++KTL DMV +GT   +A AYVA      +RI  FGIL+GV S+ 
Sbjct: 97  ILGYRRDTNFFYAFYVIKTLFDMVCQGTIDCLANAYVAKNVHGTKRISMFGILAGVSSIS 156

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISNHNELTQPIFDENISG---- 350
            VC + SA+ LSIA+ FQVA     + +VYMR+FLKE + + ++      DE  SG    
Sbjct: 157 GVCASLSARFLSIASTFQVAAISLFIGLVYMRVFLKERLQDADD-----DDEADSGGCRS 216

Query: 351 --DDENGPQLTTRNQLL-----TATGI-----SSLRDVICLITSRLQL------------ 410
             +  NG  L    + +     T T +     SS +D++ LI +   L            
Sbjct: 217 HQEVHNGGDLKMLTEPILRDAPTKTHVFNSKYSSWKDMVSLINNSTILIQALVVTFFATF 276

Query: 411 ------QPLQFFLKARFHFNKNQFPDLMIIDGVAGATSQ---VPYASRALSIFTVIVSPI 460
                   L +FLKARF FNKN F +L ++  + G+ SQ   +P  S  +    V+ + +
Sbjct: 277 SESGRGSALMYFLKARFGFNKNDFAELFLLVTIIGSISQLFILPTLSSTIGERKVLSTGL 336

[Close]

BLAST of Lsi10G008170 vs. TAIR10
Match: AT2G16970.1 (AT2G16970.1 Major facilitator superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-26
Identity = 97/285 (34.04%), Postives = 139/285 (48.77%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AYRR TNFFYAFYI K L DM              A      +RI  FG+L+GV+S+ 
Sbjct: 97  ILAYRRDTNFFYAFYITKILFDM--------------AKNVCGRKRISMFGVLAGVRSIS 156

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISNHNELTQPIFDENISG-DDE 350
            VC TFSA+LL IA++FQVA       +VYMR+FLKE + + +E      D+N SG +  
Sbjct: 157 GVCATFSARLLPIASIFQVAAISFFFGLVYMRVFLKERLHDDDE-DDCDEDDNTSGRNHH 216

Query: 351 NGPQLT-----------TRNQLLTATGISSLRDVICLI-TSRLQLQPL------------ 410
           +G  LT           T+  ++  T  SSL+D++ LI  S + +Q L            
Sbjct: 217 DGGDLTMLAEPILRDAPTKIHIVLNTKYSSLKDMVSLIKNSTILVQTLVVTFFATFAQSG 276

Query: 411 -----QFFLKARFHFNKNQFPDLMIIDGVAGATSQ---VPYASRALSIFTVIVSPILR-- 460
                 +FLKARF FNKN F +L+++  + G+ SQ   +P    A+    V+ + +L   
Sbjct: 277 MQSAFLYFLKARFGFNKNDFAELILLVTIIGSISQLFILPKLVSAIGERRVLSTGLLMDS 336

[Close]

BLAST of Lsi10G008170 vs. TAIR10
Match: AT2G16990.1 (AT2G16990.1 Major facilitator superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 7.4e-25
Identity = 93/288 (32.29%), Postives = 132/288 (45.83%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+ YRR   FFY FYI K LT MV EGT   +A AYVA       RI AFGIL+G+K++ 
Sbjct: 96  ILGYRRDIKFFYVFYISKILTSMVCEGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIA 155

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESIS---------------NHNEL 350
            + GT  A+ L IA  FQV+     + +VYMR+FLKE ++               +H+ +
Sbjct: 156 GLFGTLVARFLPIALTFQVSAISFFVGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSI 215

Query: 351 TQPIFDENISGDDENGPQLTTRNQLLTATGISSLRDVICLI-TSRLQLQPL--------- 410
              +  E I  D     Q+  +         SSL+D+I L+ TS +  Q L         
Sbjct: 216 NTTMLAEPILNDRPIKTQVFHKK-------YSSLKDMISLMKTSTIFFQALVVTFFSSFS 275

Query: 411 --------QFFLKARFHFNKNQFPDLMIIDGVAGATSQVPYASRALS-----------IF 460
                    +FLKARF F+K QF DL+++  + G+ SQ+    R  S           +F
Sbjct: 276 DSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQLFVLPRFASAIGECKLLSTGLF 335

[Close]

BLAST of Lsi10G008170 vs. NCBI nr
Match: gi|703062939|ref|XP_010086842.1| (Hippocampus abundant transcript 1 protein [Morus notabilis])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 109/259 (42.08%), Postives = 148/259 (57.14%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AY RTTNFFYA+Y+MKTLT MV EG+T  +ALAYVAD  S++ R  AFGI+SGV S  
Sbjct: 94  ILAYNRTTNFFYAYYVMKTLTAMVCEGSTNCLALAYVADHISDQGRASAFGIMSGVVSAA 153

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISNHNELTQPIFDENISGDDEN 350
           +VCGT +++ L  A+ FQVA   S+ A VYMR+FL+ES+ + + L QPI         + 
Sbjct: 154 FVCGTLASRFLPTASTFQVAALASMTAAVYMRVFLEESLPHEDSLRQPIL--------KG 213

Query: 351 GPQLTTRNQLLTATGIS----SLRDVICLITSRLQLQ------------------PLQFF 410
           GP +    +    T +S    +++D+I L+ S                        L +F
Sbjct: 214 GPDIEKNGEAPKRTQVSKTFPTMKDLISLLKSSKTFSEAATVSFFNSLAEGGFQASLMYF 273

Query: 411 LKARFHFNKNQFPDLMIIDGVAGATSQVPY--------ASRALSIFTVIVSPILRGIHTN 460
           LKARFHFNK+QF DLM+I GVAGA SQ+ +            L    + V  I   +++ 
Sbjct: 274 LKARFHFNKDQFADLMLILGVAGAISQLLFLPLLAPIVGETKLLCIGLFVGCINTFVYSI 333

[Close]

BLAST of Lsi10G008170 vs. NCBI nr
Match: gi|743906425|ref|XP_011046630.1| (PREDICTED: hippocampus abundant transcript-like protein 1 [Populus euphratica])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 111/273 (40.66%), Postives = 152/273 (55.68%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AY RTTNFFYA+Y+++TLT M+ EG+   +ALAYVAD   E QR  AFGILSG+ +  
Sbjct: 94  ILAYSRTTNFFYAYYVLRTLTAMICEGSINCLALAYVADNVLERQRTSAFGILSGIATAA 153

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISNHNELTQPIFDENISGDDEN 350
           +VCGT +A+ LS A  FQVA  +S+LA VYMRIFLKES+ N   LTQPI     SG D++
Sbjct: 154 FVCGTLAARFLSTALTFQVAALVSMLAAVYMRIFLKESLPNGENLTQPILK---SGQDDH 213

Query: 351 GPQLTTRNQLLTATGISSLRDVICLITSRLQLQ------------------PLQFFLKAR 410
                   Q      I S++D+I L+ SR+                      + ++LKAR
Sbjct: 214 CQDGDLSRQAPVLKKIPSIQDIIGLLKSRVTFSQAAVVAFFNSLAEGGMQASIMYYLKAR 273

Query: 411 FHFNKNQFPDLMIIDGVAGATSQV-------PYASR----ALSIFTVIVSPILRGIHTNL 460
           FHF+KN   DLM++ G+AG  SQ+       P+ +     A+ +   I   +L  +  + 
Sbjct: 274 FHFSKNHNADLMLLLGIAGMASQLVFMPLLAPHVAEEKLLAIGLLGGIADALLYSVAWSN 333

[Close]

BLAST of Lsi10G008170 vs. NCBI nr
Match: gi|641849311|gb|KDO68186.1| (hypothetical protein CISIN_1g011514mg [Citrus sinensis])

HSP 1 Score: 168.3 bits (425), Expect = 3.2e-38
Identity = 109/275 (39.64%), Postives = 152/275 (55.27%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AYRR+ +FFYA+Y ++TLT MV EG+   +ALAYVAD  SE QR  AFGIL GV S  
Sbjct: 97  ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISN--HNELTQPIFDENISGDD 350
           +VCGT +A+ LS  + FQ AT +S+LA  YMR+FLK+ + N   ++LT+PI  E   G +
Sbjct: 157 FVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVN 216

Query: 351 ENGPQLTTRNQLLTATGISSLRDVICLITSRLQLQ------------------PLQFFLK 410
           +N  +  +  ++     I S+RD+ICL+ S + L                      +FLK
Sbjct: 217 QN--ESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK 276

Query: 411 ARFHFNKNQFPDLMIIDGVAGATSQV-------PYASRA----LSIFTVIVSPILRGIHT 460
           A+FHFNKNQF DLM+I G+AG  SQ+       P    A    L +F   ++  +  I  
Sbjct: 277 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW 336

[Close]

BLAST of Lsi10G008170 vs. NCBI nr
Match: gi|568866688|ref|XP_006486681.1| (PREDICTED: hippocampus abundant transcript-like protein 1 [Citrus sinensis])

HSP 1 Score: 168.3 bits (425), Expect = 3.2e-38
Identity = 109/275 (39.64%), Postives = 152/275 (55.27%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AYRR+ +FFYA+Y ++TLT MV EG+   +ALAYVAD  SE QR  AFGIL GV S  
Sbjct: 97  ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISN--HNELTQPIFDENISGDD 350
           +VCGT +A+ LS  + FQ AT +S+LA  YMR+FLK+ + N   ++LT+PI  E   G +
Sbjct: 157 FVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVN 216

Query: 351 ENGPQLTTRNQLLTATGISSLRDVICLITSRLQLQ------------------PLQFFLK 410
           +N  +  +  ++     I S+RD+ICL+ S + L                      +FLK
Sbjct: 217 QN--ESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK 276

Query: 411 ARFHFNKNQFPDLMIIDGVAGATSQV-------PYASRA----LSIFTVIVSPILRGIHT 460
           A+FHFNKNQF DLM+I G+AG  SQ+       P    A    L +F   ++  +  I  
Sbjct: 277 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW 336

[Close]

BLAST of Lsi10G008170 vs. NCBI nr
Match: gi|567859748|ref|XP_006422528.1| (hypothetical protein CICLE_v10028321mg [Citrus clementina])

HSP 1 Score: 168.3 bits (425), Expect = 3.2e-38
Identity = 109/275 (39.64%), Postives = 152/275 (55.27%), Query Frame = 1


Query: 231 IMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSIALAYVADKTSEEQRILAFGILSGVKSVG 290
           I+AYRR+ +FFYA+Y ++TLT MV EG+   +ALAYVAD  SE QR  AFGIL GV S  
Sbjct: 97  ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156

Query: 291 YVCGTFSAQLLSIATVFQVATFMSVLAVVYMRIFLKESISN--HNELTQPIFDENISGDD 350
           +VCGT +A+ LS  + FQ AT +S+LA  YMR+FLK+ + N   ++LT+PI  E   G +
Sbjct: 157 FVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVN 216

Query: 351 ENGPQLTTRNQLLTATGISSLRDVICLITSRLQLQ------------------PLQFFLK 410
           +N  +  +  ++     I S+RD+ICL+ S + L                      +FLK
Sbjct: 217 QN--ESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK 276

Query: 411 ARFHFNKNQFPDLMIIDGVAGATSQV-------PYASRA----LSIFTVIVSPILRGIHT 460
           A+FHFNKNQF DLM+I G+AG  SQ+       P    A    L +F   ++  +  I  
Sbjct: 277 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW 336

The following BLAST results are available for this feature:

BLAST of Lsi10G008170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G008170 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QBZ4_9ROSA	1.2e-39	42.08	Hippocampus abundant transcript 1 protein OS=Morus notabilis GN=L484_006072 PE=4...	[more]
A0A067FLC9_CITSI	2.2e-38	39.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011514mg PE=4 SV=1	[more]
A0A067FYF0_CITSI	2.2e-38	39.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011514mg PE=4 SV=1	[more]
V4RN73_9ROSI	2.2e-38	39.64	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028321mg PE=4 SV=1	[more]
A0A067KAP4_JATCU	1.1e-37	38.83	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13068 PE=4 SV=1	[more]

BLAST of Lsi10G008170 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G16980.2	2.7e-27	34.26	Major facilitator superfamily protein	[more]
AT2G16970.1	8.7e-26	34.04	Major facilitator superfamily protein	[more]
AT2G16990.1	7.4e-25	32.29	Major facilitator superfamily protein	[more]

BLAST of Lsi10G008170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703062939\|ref\|XP_010086842.1\|	1.7e-39	42.08	Hippocampus abundant transcript 1 protein [Morus notabilis]	[more]
gi\|743906425\|ref\|XP_011046630.1\|	1.1e-38	40.66	PREDICTED: hippocampus abundant transcript-like protein 1 [Populus euphratica]	[more]
gi\|641849311\|gb\|KDO68186.1\|	3.2e-38	39.64	hypothetical protein CISIN_1g011514mg [Citrus sinensis]	[more]
gi\|568866688\|ref\|XP_006486681.1\|	3.2e-38	39.64	PREDICTED: hippocampus abundant transcript-like protein 1 [Citrus sinensis]	[more]
gi\|567859748\|ref\|XP_006422528.1\|	3.2e-38	39.64	hypothetical protein CICLE_v10028321mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR020846	MFS_dom
IPR011701	MFS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005215	transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G008170.1	Lsi10G008170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 232..332 score: 3.
IPR020846	Major facilitator superfamily domain	unknown	SSF103473	MFS general substrate transporter	coord: 253..452 score: 2.2
None	No IPR available	GENE3D	G3DSA:1.20.1250.20		coord: 243..332 score: 4.
None	No IPR available	PANTHER	PTHR23504	FAMILY NOT NAMED	coord: 231..415 score: 1.3
None	No IPR available	PANTHER	PTHR23504:SF36	MAJOR FACILITATOR PROTEIN	coord: 231..415 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G008170	CmaCh20G007330	Cucurbita maxima (Rimu)	cmalsiB504
Lsi10G008170	CmoCh20G007310	Cucurbita moschata (Rifu)	cmolsiB487
Lsi10G008170	Cla001729	Watermelon (97103) v1	lsiwmB076
Lsi10G008170	ClCG02G011130	Watermelon (Charleston Gray)	lsiwcgB049
Lsi10G008170	Cla97C02G036890	Watermelon (97103) v2	lsiwmbB048
Lsi10G008170	Bhi10G000922	Wax gourd	lsiwgoB076
Lsi10G008170	Cp4.1LG16g03370	Cucurbita pepo (Zucchini)	cpelsiB230
Lsi10G008170	Carg16156	Silver-seed gourd	carlsiB313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G008170	Cucurbita pepo (Zucchini)	cpelsiB226
Lsi10G008170	Wild cucumber (PI 183967)	cpilsiB425
Lsi10G008170	Cucumber (Chinese Long) v2	culsiB423
Lsi10G008170	Cucumber (Gy14) v2	cgyblsiB387
Lsi10G008170	Cucumber (Chinese Long) v3	cuclsiB450
Lsi10G008170	Cucumber (Gy14) v1	cgylsiB174