Lsi10G007980 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G007980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 10785961 .. 10786969 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAAGTTTCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGTTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCTGGGCTCGCGCCCAAGGTTTTGCAGCGACCGTCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGAGTATAGGTCACGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCGTTGGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGATCTAGGTTAGCGTGCAGTTAGGCACCGTAACCTGGCTTTCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCTGTGGCAGGGCTCAACAAAGCAGTCGCACCGTCAAACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGTGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGCCCGCGGGCTCCAGCTATCCTGAGGGAAACTTCGGAAGGAACCAGCTACTAGACGATTCGATTAGTCTTTCGCCCCTATACCCAAGTAAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTCGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTTCAGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCTCACCAGTCAGTTTCCTTGCACCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCCGAAGGCACGCGCTGCCAGCCACGATCTGGACGACGACGTCTCCACAGGCGTAACAAAGGCCTGGACTTAG

mRNA sequence

ATGTGCAAGTTTCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGTTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCTGGGCTCGCGCCCAAGGTTTTGCAGCGACCGTCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGAGTATAGGTCACGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTCGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTTCAGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCTCACCAGTCAGTTTCCTTGCACCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCCGAAGGCACGCGCTGCCAGCCACGATCTGGACGACGACGTCTCCACAGGCGTAACAAAGGCCTGGACTTAG

Coding sequence (CDS)

ATGTGCAAGTTTCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGTTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCTGGGCTCGCGCCCAAGGTTTTGCAGCGACCGTCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGAGTATAGGTCACGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTCGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTTCAGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCTCACCAGTCAGTTTCCTTGCACCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCCGAAGGCACGCGCTGCCAGCCACGATCTGGACGACGACGTCTCCACAGGCGTAACAAAGGCCTGGACTTAG

Protein sequence

MCKFRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRRPSIGHALQRHPFSGLVDSAVSLRASTRVSSRFAPLRHSSPSFQSRQACSHSNPSQKIKVGRWCNPLGDLTSQFPCTLRVYSPVNSHTCQTPWSVFQDGSNGEPTGRCQERADAEARPKARAASHDLDDDVSTGVTKAWT
Homology
[Close]
BLAST of Lsi10G007980 vs. TrEMBL
Match: A0A0D2ZUF1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.5e-56
Identity = 122/195 (62.56%), Postives = 134/195 (68.72%), Query Frame = 1 

Query: 1   MCKFRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRR 60
           MCK RSHGTFPLFGLQSSHLNICYYHQDLHRRPLR   R RFCSDRRALLLI AW+LPRR
Sbjct: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPSLRLRFCSDRRALLLIEAWILPRR 60

Query: 61  PSIGHALQRHPFSGLVDSAVSLRAS----------TRVSSRFAPLRHSSPSFQSRQACSH 120
           P IG ALQRHPFSGLVDSA    A              S R   + H S     R A + 
Sbjct: 61  PGIGRALQRHPFSGLVDSADERFARQYRCGPPPEFPLASPRSGIVHHLSG--PDRHAHTR 120

Query: 121 SNPSQKIKVGRWCNPLGDLTSQFPCTLRVYSPVNSHTCQTPWSVFQDGSNGEPTGRCQER 180
           +   +   VG  C P+ D  +Q P  LRVYSPV+SHTCQ+PWSVFQDGSNGEPTGRC + 
Sbjct: 121 TLLRRSRSVG--CAPVRDPANQLPYALRVYSPVDSHTCQSPWSVFQDGSNGEPTGRCPKH 180

Query: 181 ADAEARPKARAASHD 186
           A+ E R +ARAA HD
Sbjct: 181 ANVEERREARAADHD 191

[Close]
BLAST of Lsi10G007980 vs. TrEMBL
Match: M4FJ68_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 7.4e-52
Identity = 114/179 (63.69%), Postives = 122/179 (68.16%), Query Frame = 1 

Query: 1   MCKFRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRR 60
           M K RSHGTFPLFGLQSSHLNICYYHQDLHRRPLR G RPRFCSDRR LLLI AWLLPRR
Sbjct: 1   MWKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGLRPRFCSDRRTLLLIKAWLLPRR 60

Query: 61  PSIGHALQRHPFSGLVDSAVSLRAS----------TRVSSRFAPLRHSSPSFQSRQACSH 120
           P I HALQRHP  GLVDSA    A              S R   + H S     R A + 
Sbjct: 61  PDIVHALQRHPVLGLVDSADERFARQYRCGPPPEFPLASPRSGIVHHLSG--PDRHAHTR 120

Query: 121 SNPSQKIKVGRWCNPLGDLTSQFPCTLRVYSPVNSHTCQTPWSVFQDGSNGEPTGRCQE 170
           +   +   VG  C P+ D  +Q PC LRVYSPV+SHTCQTPWSVF+DGSNGEPTGRC E
Sbjct: 121 TLLRRSRSVG--CAPVRDPANQLPCALRVYSPVDSHTCQTPWSVFKDGSNGEPTGRCPE 175

[Close]
BLAST of Lsi10G007980 vs. TrEMBL
Match: A0A0R0GH91_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G015000 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.3e-43
Identity = 96/147 (65.31%), Postives = 102/147 (69.39%), Query Frame = 1 

Query: 17  SSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRRPSIGHALQRHPFSGLV 76
           +SHLNICYYHQDLHRRPLR GSRP FCSDRRALLLIGAW LPRRP               
Sbjct: 239 TSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWSLPRRP--------------- 298

Query: 77  DSAVSLRASTRVSSRFAPLRHSSPSFQSRQACSHSNPSQKIKVGRWCNPLGDLTSQFPCT 136
              VSLRASTRVSS FAPLRHSSPSF SRQ CSHSNPSQKI+VGR CNP GD T+Q PC 
Sbjct: 299 ---VSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIRVGRRCNPQGDPTNQLPCA 358

Query: 137 LRVYSPVNSHTCQTPWSVFQDGSNGEP 164
           LRV  P+     +     F+ G  G P
Sbjct: 359 LRVTRPLTRTHVRLLGPCFKTGRMGSP 367

[Close]
BLAST of Lsi10G007980 vs. TrEMBL
Match: M1DZ24_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046276 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-37
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 1 

Query: 78  SAVSLRASTRVSSRFAPLRHSSPSFQSRQACSHSNPSQKIKVGRWCNPLGDLTSQFPCTL 137
           ++VSLRASTRVSS FAPLRHSSPSF SRQ CSHSNPSQKIKVGR C P GD T+Q P  L
Sbjct: 17  TSVSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIKVGRRCTPQGDPTNQLPYAL 76

Query: 138 RVYSPVNSHTCQTPWSVFQDGSNGEPTGRCQERADAEARPK 179
           RVYSPV+SHTCQTPWSVFQDGSNGEPTG+  ERADAEAR +
Sbjct: 77  RVYSPVDSHTCQTPWSVFQDGSNGEPTGQRPERADAEARQR 117

[Close]
BLAST of Lsi10G007980 vs. TrEMBL
Match: A0A0D2ZWN1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-37
Identity = 87/121 (71.90%), Postives = 91/121 (75.21%), Query Frame = 1 

Query: 1   MCKFRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRR 60
           MCK RSHGTFPLFGLQSSHLNICYYHQDLHR PLR GSRPRFCSDRRALLLI AWLLPRR
Sbjct: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRLPLRPGSRPRFCSDRRALLLIEAWLLPRR 60

Query: 61  PSIGHALQRHPFSGLVDSAVSLRASTRVSSRFAPLRHSS-PSFQSR---QACSHSNPSQK 118
           P IG ALQRHPFSGLVDSAV  R     SSR A   +   P++ SR    A   S+P Q 
Sbjct: 61  PGIGRALQRHPFSGLVDSAVGRRNPASDSSRIASCAYQKWPTWSSRFRGMAQQSSHPVQP 120

[Close]
BLAST of Lsi10G007980 vs. NCBI nr
Match: gi|947068886|gb|KRH17777.1| (hypothetical protein GLYMA_13G015000, partial [Glycine max])

HSP 1 Score: 182.2 bits (461), Expect = 9.0e-43
Identity = 96/147 (65.31%), Postives = 102/147 (69.39%), Query Frame = 1 

Query: 17  SSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRRPSIGHALQRHPFSGLV 76
           +SHLNICYYHQDLHRRPLR GSRP FCSDRRALLLIGAW LPRRP               
Sbjct: 239 TSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWSLPRRP--------------- 298

Query: 77  DSAVSLRASTRVSSRFAPLRHSSPSFQSRQACSHSNPSQKIKVGRWCNPLGDLTSQFPCT 136
              VSLRASTRVSS FAPLRHSSPSF SRQ CSHSNPSQKI+VGR CNP GD T+Q PC 
Sbjct: 299 ---VSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIRVGRRCNPQGDPTNQLPCA 358

Query: 137 LRVYSPVNSHTCQTPWSVFQDGSNGEP 164
           LRV  P+     +     F+ G  G P
Sbjct: 359 LRVTRPLTRTHVRLLGPCFKTGRMGSP 367

[Close]
BLAST of Lsi10G007980 vs. NCBI nr
Match: gi|700198832|gb|KGN53990.1| (hypothetical protein Csa_4G243140 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MCKFRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRR 60
          MCK RSHGTFPLFGLQSSHLNICYYHQDLHRRPLR GSRPRFCSDRRALLLIGAWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60

Query: 61 PSIGHALQRHPFSGLVDSAVSL 83
          P IG ALQRHPFSGLVDSA  L
Sbjct: 61 PGIGRALQRHPFSGLVDSAGEL 82

[Close]
BLAST of Lsi10G007980 vs. NCBI nr
Match: gi|902213626|gb|KNA17311.1| (hypothetical protein SOVF_081120 [Spinacia oleracea])

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 1 

Query: 1  MCKFRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRR 60
          MCK RSHGTFPLFGLQSSHLNICYYHQDLH+RPLR GSR RFCSDR ALLLIGAW LPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHQRPLRPGSRHRFCSDRCALLLIGAWHLPRR 60

Query: 61 PSIGHALQRHPFSGLVDSAVSL 83
          P IGHALQRHPFSGLVDSA  L
Sbjct: 61 PGIGHALQRHPFSGLVDSAGEL 82

[Close]
BLAST of Lsi10G007980 vs. NCBI nr
Match: gi|253759791|ref|XP_002488947.1| (hypothetical protein SORBIDRAFT_1368s002010, partial [Sorghum bicolor])

HSP 1 Score: 145.6 bits (366), Expect = 9.3e-32
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 1  MCKFRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRR 60
          MCK RSHGTF LFGLQSSHLNICYYHQDLHRRPLR GSRP FCS RRALLLIGAW  PR 
Sbjct: 1  MCKCRSHGTFLLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCSGRRALLLIGAWRSPRW 60

Query: 61 PSIGHALQRHPFSGLVDSAVSL 83
          P +G ALQRHPFSGLVDSA  L
Sbjct: 61 PGVGRALQRHPFSGLVDSAGEL 82

[Close]
BLAST of Lsi10G007980 vs. NCBI nr
Match: gi|985468538|ref|XP_015389999.1| (PREDICTED: uncharacterized protein LOC107178872 [Citrus sinensis])

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-31
Identity = 73/101 (72.28%), Postives = 79/101 (78.22%), Query Frame = 1 

Query: 1   MCKFRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRLGSRPRFCSDRRALLLIGAWLLPRR 60
           MCK RSHGTFPLFGLQSSHLNICYYHQDLH+RPLR GSRP F  DRRALLLIGAW LPRR
Sbjct: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHQRPLRSGSRPGFYGDRRALLLIGAWYLPRR 60

Query: 61  PSIGHALQRHPFSGLVDS-AVSLRASTRVSSRFAPLRHSSP 101
             IG AL+RHPFSGLVDS +  L   TR+     P+  +SP
Sbjct: 61  SGIGRALKRHPFSGLVDSVSAQLGTVTRL-----PVHPASP 96

The following BLAST results are available for this feature:
BLAST of Lsi10G007980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G007980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2ZUF1_BRAOL6.5e-5662.56Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
M4FJ68_BRARP7.4e-5263.69Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0R0GH91_SOYBN6.3e-4365.31Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G015000 PE=4 SV=1[more]
M1DZ24_SOLTU1.0e-3781.19Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046276 PE=4 SV=1[more]
A0A0D2ZWN1_BRAOL1.8e-3771.90Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
BLAST of Lsi10G007980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G007980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|947068886|gb|KRH17777.1|9.0e-4365.31hypothetical protein GLYMA_13G015000, partial [Glycine max][more]
gi|700198832|gb|KGN53990.1|5.6e-3792.68hypothetical protein Csa_4G243140 [Cucumis sativus][more]
gi|902213626|gb|KNA17311.1|1.2e-3489.02hypothetical protein SOVF_081120 [Spinacia oleracea][more]
gi|253759791|ref|XP_002488947.1|9.3e-3284.15hypothetical protein SORBIDRAFT_1368s002010, partial [Sorghum bicolor][more]
gi|985468538|ref|XP_015389999.1|2.1e-3172.28PREDICTED: uncharacterized protein LOC107178872 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G007980.1Lsi10G007980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37395FAMILY NOT NAMEDcoord: 1..82
score: 1.3
NoneNo IPR availablePANTHERPTHR37395:SF2SUBFAMILY NOT NAMEDcoord: 1..82
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G007980Cucumber (Gy14) v2cgyblsiB088
Lsi10G007980Cucumber (Chinese Long) v3cuclsiB107