Lsi10G007670 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G007670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	UPF0760 C2orf29-like protein
Location	chr10 : 10491808 .. 10495143 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTAAAGTCGGACGTCTAGTTGAAAACGAAAAGAAAGCAAGTTTGTATATATAAGTCGAAGATTTACTAATTTTGTGTAGAGAGTTCTTTTTGTTCTACACCTGCCATTGCATTGATGTTCAAAATCTCGAACAAGGAAGTCAAGCGGGGAAGCATGAAGATGAGCCTGACGGCAGATGAATCCCGAACGCTCTACTCTTTGCTAGCAGGAGGAGATCACCGCCCATTTACAGATATCATCGCCGATTTTACCTCCAAGATCCCTCGCACTCGTCACTTTGTTGCCTGTTATTCACTCGTTGTTCTGTTAGAGGTAATTCAATCTCTGTCACTCTTCCTATGAACTTTCTTCGTCTTAATTTCTCTTTAATTTGTTCTGTTTTACTTCTTTACGCCCGGCTTTAGGGTTGCACTTCATTTGCAAATCTTGTAATTCATTCTTCTCGTTTGACCATTTTTTGTTTGTTTAACCAATTCTAACCTGTAACTACAAGCGTCTGTGTCACCAAGCTCGAATACCCACCAGGGATGTATAACCCAAATCGATGTAGTTGTGGCCGCAGAAACACTGCTGTAATAATAATATATACGTTTCTTTTACGTTGGTTTTATTTTGAGGCCACTCAAACTGTGTCAAAATATTTCTCCAATCTTCATCCAGTAAATTATAACAGTTTATTTAGTACTCAATCTCGGTCCATCTTTTGATTCTAGTCATCTTGACAATATCGGATGTTATTTCACAACCTGTTCACTAATGCATTCTCTTTCATTTAAAATAAAATTTTTAAAACGCAGCAGAAGATTTTGTTCACTGAATTTCATACAAGCGAGAGGTATCTTAAATCGTCAATGCTTTTCACTATGTGGAGTTATTCAACGTGTAGGATTTTTTCTCATTTATTTTTGTTGTCGTTTTTAGTTTAGTCTTAGATATTTGGGGTCTTCTCAATTGCTTGGTTTAGTTTGCAATACTTTTTTTAGAAAATGTCTGAAACACTGCTCTTTCTTGCTATGTTTGGTAGTAACCTTTTGTTTTCCTTGTAGTTTTATCATTCTTATGGAAGCCTGTTCTTTTATCACTTGGAAAGAAGAATGTTAGGATTTGCTGTTTTTTGTTTGTTTGTTCTTTTTCCTCCTATTCTCTTTGTTATTCTCGCAGTTAGTGTGAATTGTTGAGACAATTAGGACACATTCGTGGATTTTGGACAATTGGACCAATTTACTTCATCTCCCTCTTCAGAATTCTGGTTGGGAGTTAGGAAATTGAGAGCATGACGAGAGACCTGTTTTGGGAAGGGACAAATGACAGGGGAGGGTCGCACTTGGTCAAGTGGGAGTTGGTGTTGTAGCTGGTGAGGTATCACAAATGTTAGATTATGTGATGACTGATGAGGCCTTCTTGGCAAAATCCAAATGGTTGTGGCGTTCCTTCACAAAGCCAAACACTATGGTTTAGGCTGATGGTATTTCGAGCAGCTCTTGTAAAAGCCTTTTGAAAGCTATCTCTTTTGGGTTCCCTCTTTTTCTCAATTTATCACTTGTTCGGTTGGGGAAGGTTCAAAGGTTTATTTTTGGGAGGATTGTTGGATGGGGAGGAGCCTCTTTGTACATTGTTTTTGCAGTTGTGTCACCACTCGAATAAGAGGCCGCATCTAGTAGCCTCTGTGCTCCCTTCCTTAGATCCTTCCTCATCTATCTCCTTTGGTTTCCAAAGACTTTTGACCAAATAGAGAGGCGGTAGACGTGGATGCGACAAATCTTCTTTTGCTTTCAAGCTAAATTCGTGGTTTCTAGGAGAAGGGATGTTAGGTTTTCGGCCTTGGACCCTTTTATGAGCTTCTCTTGTCATTCCTTCTTTCATCTTCTATCTTCCCCTTCTCCCCCCATTGTCGACTCTTTTTTGCCTTTCTCTAGAAGGTTAAAATTTCAAAGAAGGTTTAGTTTTTTGCTTGACAAATTTTACATGGGAAAGTCAACACCATGGATTGTGTTCAAAGAGACACTTCCCTAGTTTTGTTCTTGCATTGGTTCATTCCTTGCATGAGGTACGAGGATGATCTTGATAATCTCTTATGGGGTTGTTAGTTTGCTCACTTTCTTTGGAGTCATTGGTTGAGATCGTTTGGGGTCTGTTGGGTGTGGCACATAGATGATAGGGCTCAGATGGAGGAGGTGCTCTTGAACTCTCCCTTTAAGGAGAAGGGTACAATTTTATGACAAGCCAACTCTTTTCATTATATCAATGAAAAGTTTGTTTCCTTTTTTTTAGAAAAAGACAAGCCAACTCTTTTGTTATTCTATGGGGCATTTTGAATAAGAGGAATAATAGAATTTTCGGAGAGGTTGAGTGATCATGTGAAGTTGTTTGGGAGTTGGCTTGATTTAATGTTTTTTATGGATGTCAGTTATTAAACCTTTTTGTAATTACGAACATAGTCTTGTTCTTTTAGATTGGAGTTTGCTTTAGTGGTTGGTGTTGTCGTCGTCTCTTTTTTTTGTTGGGCTTGGTCTTTTGTATGCCCTTGTACATTCTTTCGTTCATCTTAATGAAAGTGTGGTTTCTTACACATGTTTGCTTAGTGATGGTTAAATTTCTATATTGTTGGTGTGTCTATTTCCATTTTTTTTCCTTATATTTTGCATGAAATCATTATATGTTGAAGGCTTGACAACCTTTTGTCTTTATGGATTACTTGTTAATGGGTCTAAAATGCAGCCCAAGAAGTTGCTCCGTGCCACACAACGTTTAGTGGGATTTTCCATTCTTCACCAGACATATTCCTCGCAGAAATCATCTTTTAATCCGTTTATATCTTTTATTGTAAATGTAAGTATGCTACCTAATGACTCGTCACAACATGCCATTTTAGAGTTCTTGCTCTTTTTACCTTTTGACTAAAAAATATATTGTCATTTAGTTTCAAATAGATGCTTAACAATTTAATTCTTGTTAGATATCAACGACCGTCACCATTGTGTTATGTTTGCATTTTACACTTTGGGTAGGAAAAACCTAAGCAATTTAACATAGTTGTAAACTATGGACGAACTTACCTTTGGATTGGAGGCTCCTTTTGTAGCTTTCTCGTACTTATTAACCTTTTGGGCTTTCTTTTTTGAATTACCCTCATGTATTATTCTAAATAAAACTTGGTTTCCTTATTTTAAATGAGCTATATTCCTTTTTCCATAGATTTCTATTGTGTGCCTCACAAGACTTTGTGATTTGTGCAAGCCTTTAAGGATTGGTCCTCATTTTAGTGCAGTGCGGCTCACGCTTTAAGGAAAATACTGTGGACGAGGTTACTCTTTTTTCTTTGGCCTCCATTGAG

mRNA sequence

GATTAAAGTCGGACGTCTAGTTGAAAACGAAAAGAAAGCAAGTTTGTATATATAAGTCGAAGATTTACTAATTTTGTGTAGAGAGTTCTTTTTGTTCTACACCTGCCATTGCATTGATGTTCAAAATCTCGAACAAGGAAGTCAAGCGGGGAAGCATGAAGATGAGCCTGACGGCAGATGAATCCCGAACGCTCTACTCTTTGCTAGCAGGAGGAGATCACCGCCCATTTACAGATATCATCGCCGATTTTACCTCCAAGATCCCTCGCACTCGTCACTTTGTTGCCTGTTATTCACTCGTTGTTCTGTTAGAGCCCAAGAAGTTGCTCCGTGCCACACAACGTTTAGTGGGATTTTCCATTCTTCACCAGACATATTCCTCGCAGAAATCATCTTTTAATCCGTTTATATCTTTTATTGTAAATTGCGGCTCACGCTTTAAGGAAAATACTGTGGACGAGGTTACTCTTTTTTCTTTGGCCTCCATTGAG

Coding sequence (CDS)

ATGTTCAAAATCTCGAACAAGGAAGTCAAGCGGGGAAGCATGAAGATGAGCCTGACGGCAGATGAATCCCGAACGCTCTACTCTTTGCTAGCAGGAGGAGATCACCGCCCATTTACAGATATCATCGCCGATTTTACCTCCAAGATCCCTCGCACTCGTCACTTTGTTGCCTGTTATTCACTCGTTGTTCTGTTAGAGCCCAAGAAGTTGCTCCGTGCCACACAACGTTTAGTGGGATTTTCCATTCTTCACCAGACATATTCCTCGCAGAAATCATCTTTTAATCCGTTTATATCTTTTATTGTAAATTGCGGCTCACGCTTTAAGGAAAATACTGTGGACGAGGTTACTCTTTTTTCTTTGGCCTCCATTGAG

Protein sequence

MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKENTVDEVTLFSLASIE

Homology

[Close]

BLAST of Lsi10G007670 vs. TrEMBL
Match: A0A0A0LK95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336700 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.4e-47
Identity = 100/125 (80.00%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 1   MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYS 60
           MFKISNKEVK GSMKMSLTADESRTL SLLAGGDHRPFTDI+ADFTSKIPRTRHFVACYS
Sbjct: 1   MFKISNKEVKSGSMKMSLTADESRTLLSLLAGGDHRPFTDILADFTSKIPRTRHFVACYS 60

Query: 61  LVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKENTVDEVTLFS 120
           L+VL EPK LLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN  S  +    +   +F 
Sbjct: 61  LLVLFEPKTLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNAASDEEAEKYERAFVFQ 120

Query: 121 LASIE 126
           L + +
Sbjct: 121 LLATD 125

[Close]

BLAST of Lsi10G007670 vs. TrEMBL
Match: A0A067JW79_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25887 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-17
Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 16  MSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQ 75
           M+L+ +ES  ++SLL   + RP  +I+++FTSK  R R F  C SL++LLE  K+L++T+
Sbjct: 1   MALSFEESNVVHSLLTS-EQRPMDEIVSEFTSKFGRARFFSVCNSLLLLLEDNKMLKSTE 60

Query: 76  RLVGFSILHQTYSSQKSSFNPFISFIVN 104
           RL+ F+ILHQ YSSQ +S NPFIS+IVN
Sbjct: 61  RLIAFAILHQAYSSQPTSMNPFISYIVN 87

[Close]

BLAST of Lsi10G007670 vs. TrEMBL
Match: M0ZYL9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401004242 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1


Query: 18  LTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRL 77
           L  +ES  L +LL  GDHRPF +I+ADFTS  P  R F AC SL ++L+ +KLL+  QRL
Sbjct: 2   LGKEESNMLLTLLKAGDHRPFDEIVADFTSSFPPHRQFYACISLALILD-EKLLKPAQRL 61

Query: 78  VGFSILHQTYSSQKSSFNPFISFIVN 104
           V F+IL Q YSSQ+ S NPFIS +VN
Sbjct: 62  VAFAILLQVYSSQEPSSNPFISLLVN 86

[Close]

BLAST of Lsi10G007670 vs. TrEMBL
Match: A0A0V0I6Q6_SOLCH (Putative CCR4-NOT transcription complex subunit 11-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1


Query: 18  LTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRL 77
           L  +ES  L +LL  GDHRPF +I+ADFTS  P  R F AC SL ++L+ +KLL+  QRL
Sbjct: 2   LGKEESNMLLTLLKAGDHRPFDEIVADFTSSFPPHRQFYACISLALILD-EKLLKPAQRL 61

Query: 78  VGFSILHQTYSSQKSSFNPFISFIVN 104
           V F+IL Q YSSQ+ S NPFIS +VN
Sbjct: 62  VAFAILLQVYSSQEXSSNPFISLLVN 86

[Close]

BLAST of Lsi10G007670 vs. TrEMBL
Match: F6HGJ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0130g00310 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-16
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 18  LTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRL 77
           +  +ES  L+SLL   +++   +I+ DF SK PR RHF  C SL++LLE K +L++TQRL
Sbjct: 2   IKVEESSVLFSLL-NAENQALDEIMTDFNSKFPRIRHFRLCTSLLMLLEDKSVLKSTQRL 61

Query: 78  VGFSILHQTYSSQKSSFNPFISFIVN 104
           V F+IL Q YSSQ+SS NPFISF++N
Sbjct: 62  VAFTILLQAYSSQQSSMNPFISFLIN 86

[Close]

BLAST of Lsi10G007670 vs. TAIR10
Match: AT5G18420.2 (AT5G18420.2 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = 1


Query: 13  SMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLR 72
           S  M +  +ES  + SLL   D RP  D++++F SK    R+   C SL ++L+ +++ +
Sbjct: 4   STMMIMRIEESAIVLSLLKS-DLRPMEDVLSEFDSKFESARYLSVCNSLSMMLQDQQMFK 63

Query: 73  ATQRLVGFSILHQTYSSQKSSFNPFISFIVN 104
            T+RL+ F I++Q YSSQK SFNPF+S +++
Sbjct: 64  NTERLIAFGIIYQCYSSQKPSFNPFLSEMIS 93

[Close]

BLAST of Lsi10G007670 vs. NCBI nr
Match: gi|659121866|ref|XP_008460852.1| (PREDICTED: CCR4-NOT transcription complex subunit 11 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-48
Identity = 102/125 (81.60%), Postives = 110/125 (88.00%), Query Frame = 1


Query: 1   MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYS 60
           MFKISNKEVK GSMKMSLTADESRTLYSLLAGGDHRPF+DI+ADFTSKIPRTRHFVACYS
Sbjct: 1   MFKISNKEVKSGSMKMSLTADESRTLYSLLAGGDHRPFSDILADFTSKIPRTRHFVACYS 60

Query: 61  LVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKENTVDEVTLFS 120
           L+VLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN  S  +    +   +F 
Sbjct: 61  LLVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNAASDEEAEKYERAFVFQ 120

Query: 121 LASIE 126
           L + +
Sbjct: 121 LLATD 125

[Close]

BLAST of Lsi10G007670 vs. NCBI nr
Match: gi|778670319|ref|XP_011649439.1| (PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 4.9e-47
Identity = 100/125 (80.00%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 1   MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYS 60
           MFKISNKEVK GSMKMSLTADESRTL SLLAGGDHRPFTDI+ADFTSKIPRTRHFVACYS
Sbjct: 1   MFKISNKEVKSGSMKMSLTADESRTLLSLLAGGDHRPFTDILADFTSKIPRTRHFVACYS 60

Query: 61  LVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKENTVDEVTLFS 120
           L+VL EPK LLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN  S  +    +   +F 
Sbjct: 61  LLVLFEPKTLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNAASDEEAEKYERAFVFQ 120

Query: 121 LASIE 126
           L + +
Sbjct: 121 LLATD 125

[Close]

BLAST of Lsi10G007670 vs. NCBI nr
Match: gi|700207104|gb|KGN62223.1| (hypothetical protein Csa_2G336700 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 4.9e-47
Identity = 100/125 (80.00%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 1   MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYS 60
           MFKISNKEVK GSMKMSLTADESRTL SLLAGGDHRPFTDI+ADFTSKIPRTRHFVACYS
Sbjct: 1   MFKISNKEVKSGSMKMSLTADESRTLLSLLAGGDHRPFTDILADFTSKIPRTRHFVACYS 60

Query: 61  LVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKENTVDEVTLFS 120
           L+VL EPK LLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN  S  +    +   +F 
Sbjct: 61  LLVLFEPKTLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNAASDEEAEKYERAFVFQ 120

Query: 121 LASIE 126
           L + +
Sbjct: 121 LLATD 125

[Close]

BLAST of Lsi10G007670 vs. NCBI nr
Match: gi|778670321|ref|XP_011649440.1| (PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-26
Identity = 70/110 (63.64%), Postives = 74/110 (67.27%), Query Frame = 1


Query: 1   MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYS 60
           MFKISNKEVK GSMKMSLTADESRTL SLLAGGDHRPFTDI+ADFTSKIPRTRHFVACYS
Sbjct: 1   MFKISNKEVKSGSMKMSLTADESRTLLSLLAGGDHRPFTDILADFTSKIPRTRHFVACYS 60

Query: 61  LVVLLEPK--------------KLLRATQRLVGFSILHQTYSSQKSSFNP 97
           L+VL E                +LL       G   L QT S     F+P
Sbjct: 61  LLVLFEAASDEEAEKYERAFVFQLLATDSSSSGKEFLKQTASDYIKGFDP 110

[Close]

BLAST of Lsi10G007670 vs. NCBI nr
Match: gi|1009125623|ref|XP_015879709.1| (PREDICTED: CCR4-NOT transcription complex subunit 11-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1


Query: 15  KMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRT-RHFVACYSLVVLLEPKKLLRA 74
           KM L+ADES+TL+SLL   + RP  DI +DF S    + R F+AC+SL  LL+ KK+L++
Sbjct: 7   KMVLSADESKTLFSLLKA-NQRPLIDIFSDFNSAFSHSQRQFIACFSLCTLLQDKKMLKS 66

Query: 75  TQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKENTVDEVTLFSLASIE 126
            QRL+ FSILHQ YSSQKSS NPFI+ I+   S       +   L  L   +
Sbjct: 67  AQRLIAFSILHQAYSSQKSSANPFITLIITAASNDDAEKYERAFLLQLLGFD 117

The following BLAST results are available for this feature:

BLAST of Lsi10G007670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G007670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK95_CUCSA	3.4e-47	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336700 PE=4 SV=1	[more]
A0A067JW79_JATCU	4.8e-17	52.27	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25887 PE=4 SV=1	[more]
M0ZYL9_SOLTU	1.1e-16	56.98	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401004242 PE=4 SV=1	[more]
A0A0V0I6Q6_SOLCH	1.1e-16	56.98	Putative CCR4-NOT transcription complex subunit 11-like OS=Solanum chacoense PE=...	[more]
F6HGJ7_VITVI	3.1e-16	53.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0130g00310 PE=4 SV=...	[more]

BLAST of Lsi10G007670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18420.2	1.0e-13	39.56	unknown protein	[more]

BLAST of Lsi10G007670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121866\|ref\|XP_008460852.1\|	1.2e-48	81.60	PREDICTED: CCR4-NOT transcription complex subunit 11 [Cucumis melo]	[more]
gi\|778670319\|ref\|XP_011649439.1\|	4.9e-47	80.00	PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Cucumis sativus...	[more]
gi\|700207104\|gb\|KGN62223.1\|	4.9e-47	80.00	hypothetical protein Csa_2G336700 [Cucumis sativus]	[more]
gi\|778670321\|ref\|XP_011649440.1\|	8.2e-26	63.64	PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Cucumis sativus...	[more]
gi\|1009125623\|ref\|XP_015879709.1\|	1.3e-18	48.21	PREDICTED: CCR4-NOT transcription complex subunit 11-like isoform X2 [Ziziphus j...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019312	CNOT11

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009630	gravitropism
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G007670.1	Lsi10G007670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019312	Protein of unknown function DUF2363	PANTHER	PTHR15975	UNCHARACTERIZED	coord: 14..103 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G007670	Csa2G336700	Cucumber (Chinese Long) v2	culsiB095
Lsi10G007670	CSPI02G16310	Wild cucumber (PI 183967)	cpilsiB093
Lsi10G007670	Cucsa.228310	Cucumber (Gy14) v1	cgylsiB373
Lsi10G007670	CmaCh20G010450	Cucurbita maxima (Rimu)	cmalsiB508
Lsi10G007670	CmaCh02G006550	Cucurbita maxima (Rimu)	cmalsiB542
Lsi10G007670	CmoCh20G010520	Cucurbita moschata (Rifu)	cmolsiB492
Lsi10G007670	Cla007836	Watermelon (97103) v1	lsiwmB066
Lsi10G007670	MELO3C023211	Melon (DHL92) v3.5.1	lsimeB056
Lsi10G007670	ClCG02G000230	Watermelon (Charleston Gray)	lsiwcgB056
Lsi10G007670	MELO3C023211.2	Melon (DHL92) v3.6.1	lsimedB058
Lsi10G007670	Cla97C02G026460	Watermelon (97103) v2	lsiwmbB053
Lsi10G007670	Bhi10G001372	Wax gourd	lsiwgoB071
Lsi10G007670	Cp4.1LG05g10400	Cucurbita pepo (Zucchini)	cpelsiB601
Lsi10G007670	Cp4.1LG16g00990	Cucurbita pepo (Zucchini)	cpelsiB222
Lsi10G007670	CsGy2G015970	Cucumber (Gy14) v2	cgyblsiB086
Lsi10G007670	Carg24297	Silver-seed gourd	carlsiB656
Lsi10G007670	Carg11721	Silver-seed gourd	carlsiB962
Lsi10G007670	CsaV3_2G019600	Cucumber (Chinese Long) v3	cuclsiB106

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G007670	Cucurbita moschata (Rifu)	cmolsiB527