Lsi10G006170 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G006170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRibosomal protein large subunit 5
Locationchr10 : 8691812 .. 8692843 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGAATCACCCAGATCTTGAATCAACTAGTGGATCATCAAATCAACACAAGGACCCAATGCATTCTCCAGATGAGTTGGGAGCTGGGGCAGCCCGCGCGCGACCCATACCAATCCTGCACTCCTTTCTCCTATTCTTTCTTTGCACTTCTTGGAAATCACGAAGAAGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCTGTGGCGTGAAATCCATCATTGGCTAAACAATCATTTGGTTATGTCATTTTGGGCTTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCTTTTTGATCTCATCCGTATTCCGATGGAAAAAAAGAAAGAAGGTTTCCGTTTCATTCAACCAACTATCTTTTTGAAGCAGATAGTTCACAGTGCTCATTCTATAGATACTGTGTAAAAAAGCCAACTCATGTTTTCACTCGATTTTCATTACGAAGATGTATCATGTCAGGATCCGTTGCTCAAACTGAATGACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCCAAAATGGAAAATTGCCTATGGAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTCGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCAGTTGAAATACGGGAAAACTCCATTCAATTCTTGATGGAAACGGAGTTTTGCGAATTATCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGATTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGGGGGAAACTCAGTAA

mRNA sequence

ATGGGGACCCAATGCATTCTCCAGATGAGTTGGGAGCTGGGGCAGCCCGCGCGCGACCCATACCAATCCTGCACTCCTTTCTCCTATTCTTTCTTTGCACTTCTTGGAAATCACGAAGAAGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGATCCGTTGCTCAAACTGAATGACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCCAAAATGGAAAATTGCCTATGGAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTCGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCAGTTGAAATACGGGAAAACTCCATTCAATTCTTGATGGAAACGGAGTTTTGCGAATTATCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGATTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGGGGGAAACTCAGTAA

Coding sequence (CDS)

ATGGGGACCCAATGCATTCTCCAGATGAGTTGGGAGCTGGGGCAGCCCGCGCGCGACCCATACCAATCCTGCACTCCTTTCTCCTATTCTTTCTTTGCACTTCTTGGAAATCACGAAGAAGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGATCCGTTGCTCAAACTGAATGACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCCAAAATGGAAAATTGCCTATGGAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTCGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCAGTTGAAATACGGGAAAACTCCATTCAATTCTTGATGGAAACGGAGTTTTGCGAATTATCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGATTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGGGGGAAACTCAGTAA

Protein sequence

MGTQCILQMSWELGQPARDPYQSCTPFSYSFFALLGNHEEDSRTGLSGRGAAVGIGNDPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ
Homology
[Close]
BLAST of Lsi10G006170 vs. Swiss-Prot
Match: RM05_ARATH (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.1e-80
Identity = 152/171 (88.89%), Postives = 156/171 (91.23%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           D LLKLN ANVMEVPG CEIRVVPKAPY+FII+NGKL MEIP GQKFIQTQRGSTGKSFR
Sbjct: 15  DLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNF VRI TVMSLLD PVEIR+NSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVRILTVMSLLDFPVEIRKNSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTI+TSANTQDE L  WSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLLLWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. Swiss-Prot
Match: RM05_BRANA (60S ribosomal protein L5, mitochondrial OS=Brassica napus GN=RPL5 PE=3 SV=2)

HSP 1 Score: 289.3 bits (739), Expect = 3.7e-77
Identity = 144/171 (84.21%), Postives = 152/171 (88.89%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLL      + +  GSCEIRVVP  PY+FII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLNRITPTLWKFLGSCEIRVVPNGPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLD PVEIR+NSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE +P+L+DHFEIFEHI GFNVTIVTSANTQDE LP WSGFLQKDEGETQ
Sbjct: 135 FCEFAPQLQDHFEIFEHIRGFNVTIVTSANTQDETLPLWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. Swiss-Prot
Match: RM05_OENBE (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana GN=RPL5 PE=2 SV=2)

HSP 1 Score: 284.6 bits (727), Expect = 9.2e-76
Identity = 148/172 (86.05%), Postives = 153/172 (88.95%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPK--APYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKS 117
           D LLKLN ANVMEVPG CEIR+VPK  + YDFII+NGKL MEI RGQKFIQT+RGSTGKS
Sbjct: 15  DLLLKLNLANVMEVPGLCEIRIVPKTSSTYDFIIKNGKLAMEILRGQKFIQTERGSTGKS 74

Query: 118 FRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLME 177
           FRSNPFLESNKDKGYVSDLARQS LRGHGMSNF VRI TVMSLLDS VEIRENSIQF ME
Sbjct: 75  FRSNPFLESNKDKGYVSDLARQSILRGHGMSNFLVRILTVMSLLDSRVEIRENSIQFSME 134

Query: 178 TEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGET 228
           TEFCE SPELEDHFEIFEHI  FNVTIVTSANTQDE L  WSGFLQKDEGE+
Sbjct: 135 TEFCEFSPELEDHFEIFEHIRRFNVTIVTSANTQDETLLLWSGFLQKDEGES 186

[Close]
BLAST of Lsi10G006170 vs. Swiss-Prot
Match: RM05_SOLTU (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2)

HSP 1 Score: 255.4 bits (651), Expect = 6.0e-67
Identity = 140/172 (81.40%), Postives = 144/172 (83.72%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           D LLKLN ANVMEVPG C+I VVPK      I+NGKL MEI  GQK    QR STGKSFR
Sbjct: 19  DLLLKLNYANVMEVPGLCKIIVVPKTAPS--IKNGKLAMEISCGQKL--KQRASTGKSFR 78

Query: 118 SNPFLESNKD-KGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMET 177
           SNPFL SNKD KGYVSDLARQSTLRGHGMS+F VRISTVMSLLDSP+EIRE SIQF MET
Sbjct: 79  SNPFLGSNKDKKGYVSDLARQSTLRGHGMSHFLVRISTVMSLLDSPLEIRERSIQFSMET 138

Query: 178 EFCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           EFCE SPELEDHFEIFEHI GFNVTIVTSANTQDE L  WSGFLQKDEGETQ
Sbjct: 139 EFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLLLWSGFLQKDEGETQ 186

[Close]
BLAST of Lsi10G006170 vs. Swiss-Prot
Match: RM05_MARPO (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha GN=RPL5 PE=3 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-47
Identity = 107/170 (62.94%), Postives = 128/170 (75.29%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQ-RGSTGKSF 117
           D LLK+N  N+MEVP  C+I VVPKAP +FI +N KL MEI  GQKFIQT+ RGSTGKSF
Sbjct: 20  DLLLKINYENIMEVPRLCKIIVVPKAPSNFI-KNVKLAMEIVCGQKFIQTRSRGSTGKSF 79

Query: 118 RSNPFL---ESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFL 177
           R N F+   ES +D GYV+ LAR STLRGH M NF  ++ T++S  D PV+I++NSIQ  
Sbjct: 80  RFNKFVLNQESKRDTGYVTYLAR-STLRGHIMYNFLEKLVTIISFYDYPVKIQKNSIQLS 139

Query: 178 METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKD 224
           M T    L PE++DHFEIFEHI GF+VTIVTSANTQDE +  WSGFLQK+
Sbjct: 140 MATSLLRLFPEIQDHFEIFEHIRGFDVTIVTSANTQDETVILWSGFLQKE 187

[Close]
BLAST of Lsi10G006170 vs. TrEMBL
Match: K7M8M6_SOYBN (Ribosomal protein subunit L5 OS=Glycine max GN=rp15 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 6.2e-87
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. TrEMBL
Match: K7KH99_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 6.2e-87
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. TrEMBL
Match: N0DKE4_PHAAN (Ribosomal protein L5 OS=Phaseolus angularis GN=rpl5 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.8e-86
Identity = 162/171 (94.74%), Postives = 164/171 (95.91%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNK+KGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKEKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. TrEMBL
Match: A0A0M4REQ6_CANSA (Ribosomal protein L5 OS=Cannabis sativa GN=rpl5 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 9.0e-86
Identity = 161/171 (94.15%), Postives = 163/171 (95.32%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLK N ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQT+RGSTGKSFR
Sbjct: 15  DPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. TrEMBL
Match: E9KZM3_VIGRA (Ribosomal protein L5 OS=Vigna radiata GN=rpl5 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85
Identity = 161/171 (94.15%), Postives = 163/171 (95.32%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL S KDKGYVSDLARQSTLRGHGMS+FSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSKKDKGYVSDLARQSTLRGHGMSHFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. TAIR10
Match: AT2G07725.1 (AT2G07725.1 Ribosomal L5P family protein)

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-86
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLK N ANVMEVPGSCEIRVVPKAPY+FII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLD PVEIR+NSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTI+TSANTQDE LP WSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLPLWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. TAIR10
Match: ATMG00210.1 (ATMG00210.1 ribosomal protein L5)

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-86
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLK N ANVMEVPGSCEIRVVPKAPY+FII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLD PVEIR+NSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTI+TSANTQDE LP WSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLPLWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. NCBI nr
Match: gi|476507674|ref|YP_007516856.1| (ribosomal protein subunit L5 (mitochondrion) [Glycine max])

HSP 1 Score: 328.6 bits (841), Expect = 8.9e-87
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. NCBI nr
Match: gi|501595012|ref|YP_007889799.1| (ribosomal protein L5 (mitochondrion) [Vigna angularis])

HSP 1 Score: 327.0 bits (837), Expect = 2.6e-86
Identity = 162/171 (94.74%), Postives = 164/171 (95.91%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNK+KGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKEKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. NCBI nr
Match: gi|1016880326|ref|YP_009243665.1| (ribosomal protein L5 (mitochondrion) [Cannabis sativa])

HSP 1 Score: 324.7 bits (831), Expect = 1.3e-85
Identity = 161/171 (94.15%), Postives = 163/171 (95.32%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLK N ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQT+RGSTGKSFR
Sbjct: 15  DPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. NCBI nr
Match: gi|323149053|ref|YP_004222816.1| (ribosomal protein L5 [Vigna radiata])

HSP 1 Score: 324.3 bits (830), Expect = 1.7e-85
Identity = 161/171 (94.15%), Postives = 163/171 (95.32%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL S KDKGYVSDLARQSTLRGHGMS+FSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSKKDKGYVSDLARQSTLRGHGMSHFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]
BLAST of Lsi10G006170 vs. NCBI nr
Match: gi|825716735|gb|AKJ25869.1| (ribosomal protein L5 (mitochondrion) [Francoa sonchifolia])

HSP 1 Score: 323.9 bits (829), Expect = 2.2e-85
Identity = 161/171 (94.15%), Postives = 163/171 (95.32%), Query Frame = 1 

Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLK N ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMS+FSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSHFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

The following BLAST results are available for this feature:
BLAST of Lsi10G006170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM05_ARATH2.1e-8088.8960S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=... [more]
RM05_BRANA3.7e-7784.2160S ribosomal protein L5, mitochondrial OS=Brassica napus GN=RPL5 PE=3 SV=2[more]
RM05_OENBE9.2e-7686.0560S ribosomal protein L5, mitochondrial OS=Oenothera berteroana GN=RPL5 PE=2 SV=... [more]
RM05_SOLTU6.0e-6781.4060S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2[more]
RM05_MARPO2.4e-4762.9460S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha GN=RPL5 PE=3 SV... [more]
BLAST of Lsi10G006170 vs. TrEMBL
Match NameE-valueIdentityDescription
K7M8M6_SOYBN6.2e-8795.32Ribosomal protein subunit L5 OS=Glycine max GN=rp15 PE=4 SV=1[more]
K7KH99_SOYBN6.2e-8795.32Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
N0DKE4_PHAAN1.8e-8694.74Ribosomal protein L5 OS=Phaseolus angularis GN=rpl5 PE=4 SV=1[more]
A0A0M4REQ6_CANSA9.0e-8694.15Ribosomal protein L5 OS=Cannabis sativa GN=rpl5 PE=4 SV=1[more]
E9KZM3_VIGRA1.2e-8594.15Ribosomal protein L5 OS=Vigna radiata GN=rpl5 PE=4 SV=1[more]
BLAST of Lsi10G006170 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07725.12.1e-8691.81 Ribosomal L5P family protein[more]
ATMG00210.12.1e-8691.81ATMG00210.1 ribosomal protein L5[more]
BLAST of Lsi10G006170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|476507674|ref|YP_007516856.1|8.9e-8795.32ribosomal protein subunit L5 (mitochondrion) [Glycine max][more]
gi|501595012|ref|YP_007889799.1|2.6e-8694.74ribosomal protein L5 (mitochondrion) [Vigna angularis][more]
gi|1016880326|ref|YP_009243665.1|1.3e-8594.15ribosomal protein L5 (mitochondrion) [Cannabis sativa][more]
gi|323149053|ref|YP_004222816.1|1.7e-8594.15ribosomal protein L5 [Vigna radiata][more]
gi|825716735|gb|AKJ25869.1|2.2e-8594.15ribosomal protein L5 (mitochondrion) [Francoa sonchifolia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022803Ribosomal_L5_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G006170.1Lsi10G006170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022803Ribosomal protein L5 domainGENE3DG3DSA:3.30.1440.10coord: 57..219
score: 1.1
IPR022803Ribosomal protein L5 domainunknownSSF55282RL5-likecoord: 57..220
score: 2.59
NoneNo IPR availablePANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 58..220
score: 6.2
NoneNo IPR availablePANTHERPTHR11994:SF11SUBFAMILY NOT NAMEDcoord: 58..220
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G006170Wild cucumber (PI 183967)cpilsiB091
Lsi10G006170Cucumber (Chinese Long) v2culsiB093
Lsi10G006170Melon (DHL92) v3.5.1lsimeB054
Lsi10G006170Cucumber (Gy14) v2cgyblsiB086
Lsi10G006170Cucumber (Gy14) v1cgylsiB594
Lsi10G006170Cucurbita maxima (Rimu)cmalsiB508