Lsi10G006050 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G006050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 8635051 .. 8638461 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGACATAGACAAATACGATGGAACTGGCTGTCCTAAGGCTCATCCGCTGCTGTTTTTCTCAAATGTAGGTTCTATGAGGCTCACTCAGAAGCAGATGGCCAAAATCTTTCCTAGAATTCTTAGTGGGGCCGCTGGGCGATGGTTCACACAAATTGACAAATCTACCCTTAAATCCTAGGATGACATCGCCAATGCTTTTTTGAAACAATAGAAAATTATAACACCCCGATGAAAGTAACCAGAAGAGGGCTAGCAATGACTCGCCAGCGACCAAATGAAACATTCACGAATTTCCTGGCCCGTTGGCAGGCCAAAGCTGCCCAAGTGATCGATCTCCCCCCAGAAAAGGAAAAAGTTCGGATAATGATCAATAACATGAGTAGGCAATACCATTACTATTTCGATTTCCAAGGATTACTTATGACTCTTTGATTGAAGCGGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAACGGAAAGAAGATAGCCCTGGGGGAACAAGCAAGAATAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCACTCCGTTAGGCATAACTTGTTGGGTTTGATGCCCTAAAACTCGTAGATAGTAAATGTTGTATTTTGACCGTCATTAATAAATGATTATTCATTATTATTCAATAAATGTTATTGATTATTTTATCTTGTTTTAATAACCCTAAAATCCAATAAACTAACATCCTAGGTTGTTTTATGAGTCTTGAACAATATGTAGAGACATATAGAGATCAATGTTCAAGTTACAACCTAAAGGGTCTATAGTATAAAGATAGGGTTGGGTACCTTATCCTGGTAACACTATGGATACGGCCCACTTTGTATTTGATACAAATGCAATGATCCAACGCGTTCATGTAGGAGACATGCGAGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACTCGACCACGAAATAGTAATCACTAGATGTAACTCCGTTGACTGGTTAGGTTTCTATTTCAATAGGTTGACCTAGGCAACTTAGTCTTAATCTTGAGTATATTGTGAACTCCTGTTCACGAGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCCCGTTTGTCGACTCGATATGCCTACCATTTTGGGGACAAGACTGAGTGAGGAGCTGGGAACATAATTATACAAGATGGATTTCACTCCTTCTCGACTGTAGGGTAAGTAGATAAGTGTTCCCTTAAGTGGTGTCTCCGGGACTTGAACATAGGGCCCTACCCTCTCACTGGCCCGAGAGGGGTTTCTGTTTGATGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATTTAGAAGTAACCCAGGGGTATAACGGTAATTTGACCCAGCTGGTGTTACGAACACTTGTGAAGGACTAACTTGCTGTCATTGGTCTATATCCGTGGACATAGAAATATATCTACAGTGAGAAGAGTGCAACTGTGGGTCTTTAGTGGAGTGTACCCACAGTTAACGAATATTGATTAATGTGGTTAATGATTTTAGCCCGTTAATCTCATATTGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCCTTCCTAGCTCGTAAAGAATATTGAGGTTATTATTGGCTGAAATTTGAATAGTTCAAATTTTCTAAGGGAAAAGTATAATGTATAATGATACATTATAATATAAAATTTATTTTACAAATTAAACTTTATAGTATAAATATAATTTTGGATACGATTCAAAGTTAATTTGTAAGAGAATTAAATATTTGAAATTGTTCAAATATTATTTTATTAAAACTATAGGTTAAAATTAATGCGCATTAGATGTACATTAAAACTATAGGTTATGAGAGAAATGTATTTGAATTTGATTCAAATGCAGGTTAAAATTAAATATTTGATATTTAATTTGGTAATTAATTAATTGGAGAATTAATTAGTTATTTAATTTAATCTAATTTAATTAAATTTGATTTAATTAAATTAATTGAATTAAAACTATAGGTTATGTGAGAGATGTTCATTTAAATATGATTTAAATGAATTGATTAATTAAATTAGATTTAATTAATTATTAATTATTAATTAATTATTAATTTAATTAATTATTGATTTAGTTAATTAATTTAATTTTAATTAATTAAGTTTGTTGTAACTCCCACGTAGAGGAGTTACTTAAGACGTGCGATAACACCCACGTTTCCCATTTTTCTCTCGCTTCTTTATATAGTGCAAAAACAGAATTTTGTTTGGTGTGAACCATTCTCTCAACAAAAAACAAAATTCTCAGCATTCTCTAAAAAAAAAATATCCAGAAGAGTTCTGTATTTTTTTTCTTGTGCCAAAAAGGTTCCACAAACCTTCCCTCAAGATTCAGAGAATAGGAAGGTTTCCAAGTGGTGGTGACACAACACGTAAGAGTTTTTATTCTCTAATTTTTTGCTTAACCTAGATTAATTTAATTCTTTTTTTGCCAATGTAAAAGTATTTCAAAATTATTAAAATTAAGTTTGAGATACGGTTCTGATACGTTTCCGCTGCGTTTTGGGTTTTAATCCCAGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACTCCTCTTCCCCCATCTCCGCCACCAGATCCTCTTCTCGTAGGTACAAAGCCAATGCCTACTGCAACAGTAGACAAATGGCCAAAATACTAACCGGTGTTTAAGGCTGAAACATGACATCCAAGACCTTATTGATTCAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCAGGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAATGGGAGAAACAGATGGTAGAGACATGATTGGAATCTGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAATCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCTCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAAGAATGAGGAGGCCCAATACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCGGGGCCAAACACATGTGTCATTGGATACTTCACCATCTCCTCCCGTCAAAATAATTTTCCACATCCGGATGGCAAAGACTATCACTTGA

mRNA sequence

ATGCCTGACATAGACAAATACGATGGAACTGGCTGTCCTAAGGCTCATCCGCTGCTGTTTTTCTCAAATGTAGCGGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAACGGAAAGAAGATAGCCCTGGGGGAACAAGCAAGAATAGTGAAGTCAATGCTGAAACATGACATCCAAGACCTTATTGATTCAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCAGGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAATGGGAGAAACAGATGGTAGAGACATGATTGGAATCTGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAATCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCTCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAAGAATGAGGAGGCCCAATACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCGGGGCCAAACACATGTGTCATTGGATACTTCACCATCTCCTCCCGTCAAAATAATTTTCCACATCCGGATGGCAAAGACTATCACTTGA

Coding sequence (CDS)

ATGCCTGACATAGACAAATACGATGGAACTGGCTGTCCTAAGGCTCATCCGCTGCTGTTTTTCTCAAATGTAGCGGCCACTCGTATTGAAGATGCTATCTACAATGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAACGGAAAGAAGATAGCCCTGGGGGAACAAGCAAGAATAGTGAAGTCAATGCTGAAACATGACATCCAAGACCTTATTGATTCAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACATTTTCAGGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAATGGGAGAAACAGATGGTAGAGACATGATTGGAATCTGGGAGACGAGATTGAGCCCCCACCTCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAATCCCAGAAAGTGAAACATTTATCCTTTACCCTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCTCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGCACCAATGATGATATGGATTTTGTCAAGAATGAGGAGGCCCAATACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCGGGGCCAAACACATGTGTCATTGGATACTTCACCATCTCCTCCCGTCAAAATAATTTTCCACATCCGGATGGCAAAGACTATCACTTGA

Protein sequence

MPDIDKYDGTGCPKAHPLLFFSNVAATRIEDAIYNGTHGSQVKEADPNGKKIALGEQARIVKSMLKHDIQDLIDSEKIEPPRANRPNVTTNPLPTHAVPPPANINMIEPTFSGWDPSLLITPAGEMGETDGRDMIGIWETRLSPHLEFTCSGGMISTTISQPLNNPSNYSRKSQKVKHLSFTLARIPQPFDESPSCSDPTDLKPLSASLWMDSDELDQYGTNDDMDFVKNEEAQYMASKSHRDPVLRMRGQTHVSLDTSPSPPVKIIFHIRMAKTIT
Homology
[Close]
BLAST of Lsi10G006050 vs. TrEMBL
Match: A5BJ71_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008192 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.0e-08
Identity = 44/91 (48.35%), Postives = 48/91 (52.75%), Query Frame = 1 

Query: 106 MIEPTFSGWDPSLLITPAGEMGETDGRDMIGIWET-RLSP----HLEFTCSGGMISTTIS 165
           MIEPT S WDPSL +TP GE GET GRDM GI ET  + P    H+    S      T  
Sbjct: 1   MIEPTLSSWDPSLQLTPXGERGETYGRDMTGIRETYEMEPPPRVHMLXWDSFYDNLPTPE 60

Query: 166 QPLNNPSNYSRKSQKVKHLSFTLARIPQPFD 192
           QPL          +     SFTLA IPQPFD
Sbjct: 61  QPLQLLPESPASDE-----SFTLAHIPQPFD 86

[Close]
BLAST of Lsi10G006050 vs. NCBI nr
Match: gi|147843100|emb|CAN83305.1| (hypothetical protein VITISV_008192 [Vitis vinifera])

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 44/91 (48.35%), Postives = 48/91 (52.75%), Query Frame = 1 

Query: 106 MIEPTFSGWDPSLLITPAGEMGETDGRDMIGIWET-RLSP----HLEFTCSGGMISTTIS 165
           MIEPT S WDPSL +TP GE GET GRDM GI ET  + P    H+    S      T  
Sbjct: 1   MIEPTLSSWDPSLQLTPXGERGETYGRDMTGIRETYEMEPPPRVHMLXWDSFYDNLPTPE 60

Query: 166 QPLNNPSNYSRKSQKVKHLSFTLARIPQPFD 192
           QPL          +     SFTLA IPQPFD
Sbjct: 61  QPLQLLPESPASDE-----SFTLAHIPQPFD 86

The following BLAST results are available for this feature:
BLAST of Lsi10G006050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G006050 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BJ71_VITVI7.0e-0848.35Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008192 PE=4 SV=1[more]
BLAST of Lsi10G006050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G006050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147843100|emb|CAN83305.1|1.0e-0748.35hypothetical protein VITISV_008192 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G006050.1Lsi10G006050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G006050Cucumber (Gy14) v1cgylsiB594
Lsi10G006050Cucurbita maxima (Rimu)cmalsiB508
Lsi10G006050Wild cucumber (PI 183967)cpilsiB091
Lsi10G006050Cucumber (Chinese Long) v2culsiB093
Lsi10G006050Melon (DHL92) v3.5.1lsimeB054
Lsi10G006050Cucumber (Gy14) v2cgyblsiB086